data_2B55 # _model_server_result.job_id rgCz_Bkn-lJ9YVK20Lhorg _model_server_result.datetime_utc '2025-03-13 17:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 2B55 # _exptl.entry_id 2B55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.535 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-(AMINOMETHYL)PIPERIDIN-1-YL)-N-(3_CYCLOHEXYL-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)ACETAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B55 _cell.length_a 71.98 _cell.length_b 72.2 _cell.length_c 53.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H31 N5 O2' _chem_comp.formula_weight 421.535 _chem_comp.id D31 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-(AMINOMETHYL)PIPERIDIN-1-YL)-N-(3_CYCLOHEXYL-4-OXO-2,4-DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIN-101312 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D31 sing 83 n n N1 HN11 D31 sing 84 n n N1 HN12 D31 sing 85 n n C2 C3 D31 sing 86 n n C2 H21 D31 sing 87 n n C2 H22 D31 sing 88 n n C3 C6 D31 sing 89 n n C3 C10 D31 sing 90 n n C3 H3 D31 sing 91 n n C6 C7 D31 sing 92 n n C6 H61 D31 sing 93 n n C6 H62 D31 sing 94 n n C7 N8 D31 sing 95 n n C7 H71 D31 sing 96 n n C7 H72 D31 sing 97 n n N8 C9 D31 sing 98 n n N8 C20 D31 sing 99 n n C9 C10 D31 sing 100 n n C9 H91 D31 sing 101 n n C9 H92 D31 sing 102 n n C10 H101 D31 sing 103 n n C10 H102 D31 sing 104 n n C20 C21 D31 sing 105 n n C20 H201 D31 sing 106 n n C20 H202 D31 sing 107 n n C21 N24 D31 sing 108 n n C21 O53 D31 doub 109 n n N24 C25 D31 sing 110 n n N24 H24 D31 sing 111 n n C25 C26 D31 doub 112 n y C25 C30 D31 sing 113 n y C26 C27 D31 sing 114 n y C26 H26 D31 sing 115 n n C27 C28 D31 doub 116 n y C27 H27 D31 sing 117 n n C28 C29 D31 sing 118 n y C28 H28 D31 sing 119 n n C29 C30 D31 doub 120 n y C29 C31 D31 sing 121 n y C30 C33 D31 sing 122 n n C31 C32 D31 sing 123 n y C31 N55 D31 doub 124 n y C32 C33 D31 sing 125 n n C32 C35 D31 doub 126 n y C33 O54 D31 doub 127 n n N34 C35 D31 sing 128 n y N34 N55 D31 sing 129 n y N34 H34 D31 sing 130 n n C35 C36 D31 sing 131 n n C36 C37 D31 sing 132 n n C36 C41 D31 sing 133 n n C36 H36 D31 sing 134 n n C37 C38 D31 sing 135 n n C37 H371 D31 sing 136 n n C37 H372 D31 sing 137 n n C38 C39 D31 sing 138 n n C38 H381 D31 sing 139 n n C38 H382 D31 sing 140 n n C39 C40 D31 sing 141 n n C39 H391 D31 sing 142 n n C39 H392 D31 sing 143 n n C40 C41 D31 sing 144 n n C40 H401 D31 sing 145 n n C40 H402 D31 sing 146 n n C41 H411 D31 sing 147 n n C41 H412 D31 sing 148 n n # _atom_sites.entry_id 2B55 _atom_sites.fract_transf_matrix[1][1] 0.013893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D31 A 1 299 1 D31 LIG . C 3 HOH A 1 300 1 HOH HOH . C 3 HOH A 2 301 2 HOH HOH . C 3 HOH A 3 302 3 HOH HOH . C 3 HOH A 4 303 4 HOH HOH . C 3 HOH A 5 304 5 HOH HOH . C 3 HOH A 6 305 6 HOH HOH . C 3 HOH A 7 306 7 HOH HOH . C 3 HOH A 8 307 8 HOH HOH . C 3 HOH A 9 308 9 HOH HOH . C 3 HOH A 10 309 10 HOH HOH . C 3 HOH A 11 310 11 HOH HOH . C 3 HOH A 12 311 12 HOH HOH . C 3 HOH A 13 312 13 HOH HOH . C 3 HOH A 14 313 14 HOH HOH . C 3 HOH A 15 314 15 HOH HOH . C 3 HOH A 16 315 16 HOH HOH . C 3 HOH A 17 316 17 HOH HOH . C 3 HOH A 18 317 18 HOH HOH . C 3 HOH A 19 318 19 HOH HOH . C 3 HOH A 20 319 20 HOH HOH . C 3 HOH A 21 320 21 HOH HOH . C 3 HOH A 22 321 22 HOH HOH . C 3 HOH A 23 322 23 HOH HOH . C 3 HOH A 24 323 24 HOH HOH . C 3 HOH A 25 324 25 HOH HOH . C 3 HOH A 26 325 26 HOH HOH . C 3 HOH A 27 326 27 HOH HOH . C 3 HOH A 28 327 28 HOH HOH . C 3 HOH A 29 328 29 HOH HOH . C 3 HOH A 30 329 30 HOH HOH . C 3 HOH A 31 330 31 HOH HOH . C 3 HOH A 32 331 32 HOH HOH . C 3 HOH A 33 332 33 HOH HOH . C 3 HOH A 34 333 34 HOH HOH . C 3 HOH A 35 334 35 HOH HOH . C 3 HOH A 36 335 36 HOH HOH . C 3 HOH A 37 336 37 HOH HOH . C 3 HOH A 38 337 38 HOH HOH . C 3 HOH A 39 338 39 HOH HOH . C 3 HOH A 40 339 40 HOH HOH . C 3 HOH A 41 340 41 HOH HOH . C 3 HOH A 42 341 42 HOH HOH . C 3 HOH A 43 342 43 HOH HOH . C 3 HOH A 44 343 44 HOH HOH . C 3 HOH A 45 344 45 HOH HOH . C 3 HOH A 46 345 46 HOH HOH . C 3 HOH A 47 346 47 HOH HOH . C 3 HOH A 48 347 48 HOH HOH . C 3 HOH A 49 348 49 HOH HOH . C 3 HOH A 50 349 50 HOH HOH . C 3 HOH A 51 350 51 HOH HOH . C 3 HOH A 52 351 52 HOH HOH . C 3 HOH A 53 352 53 HOH HOH . C 3 HOH A 54 353 54 HOH HOH . C 3 HOH A 55 354 55 HOH HOH . C 3 HOH A 56 355 56 HOH HOH . C 3 HOH A 57 356 57 HOH HOH . C 3 HOH A 58 357 58 HOH HOH . C 3 HOH A 59 358 59 HOH HOH . C 3 HOH A 60 359 60 HOH HOH . C 3 HOH A 61 360 61 HOH HOH . C 3 HOH A 62 361 62 HOH HOH . C 3 HOH A 63 362 63 HOH HOH . C 3 HOH A 64 363 64 HOH HOH . C 3 HOH A 65 364 65 HOH HOH . C 3 HOH A 66 365 66 HOH HOH . C 3 HOH A 67 366 67 HOH HOH . C 3 HOH A 68 367 68 HOH HOH . C 3 HOH A 69 368 69 HOH HOH . C 3 HOH A 70 369 70 HOH HOH . C 3 HOH A 71 370 71 HOH HOH . C 3 HOH A 72 371 72 HOH HOH . C 3 HOH A 73 372 73 HOH HOH . C 3 HOH A 74 373 74 HOH HOH . C 3 HOH A 75 374 75 HOH HOH . C 3 HOH A 76 375 76 HOH HOH . C 3 HOH A 77 376 77 HOH HOH . C 3 HOH A 78 377 78 HOH HOH . C 3 HOH A 79 378 79 HOH HOH . C 3 HOH A 80 379 80 HOH HOH . C 3 HOH A 81 380 81 HOH HOH . C 3 HOH A 82 381 82 HOH HOH . C 3 HOH A 83 382 83 HOH HOH . C 3 HOH A 84 383 84 HOH HOH . C 3 HOH A 85 384 85 HOH HOH . C 3 HOH A 86 385 86 HOH HOH . C 3 HOH A 87 386 87 HOH HOH . C 3 HOH A 88 387 88 HOH HOH . C 3 HOH A 89 388 89 HOH HOH . C 3 HOH A 90 389 90 HOH HOH . C 3 HOH A 91 390 91 HOH HOH . C 3 HOH A 92 391 92 HOH HOH . C 3 HOH A 93 392 93 HOH HOH . C 3 HOH A 94 393 94 HOH HOH . C 3 HOH A 95 394 95 HOH HOH . C 3 HOH A 96 395 96 HOH HOH . C 3 HOH A 97 396 97 HOH HOH . C 3 HOH A 98 397 98 HOH HOH . C 3 HOH A 99 398 99 HOH HOH . C 3 HOH A 100 399 100 HOH HOH . C 3 HOH A 101 400 101 HOH HOH . C 3 HOH A 102 401 102 HOH HOH . C 3 HOH A 103 402 103 HOH HOH . C 3 HOH A 104 403 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D31 . . . B 2 29.094 7.515 10.431 1 49.1 ? N1 D31 299 A 1 HETATM 2 C C2 D31 . . . B 2 28.532 7.19 11.759 1 48.7 ? C2 D31 299 A 1 HETATM 3 C C3 D31 . . . B 2 29.559 6.526 12.685 1 47.73 ? C3 D31 299 A 1 HETATM 4 C C6 D31 . . . B 2 28.915 6.17 14.029 1 47.66 ? C6 D31 299 A 1 HETATM 5 C C7 D31 . . . B 2 28.554 7.39 14.876 1 45.38 ? C7 D31 299 A 1 HETATM 6 N N8 D31 . . . B 2 29.712 8.297 15.029 1 43.33 ? N8 D31 299 A 1 HETATM 7 C C9 D31 . . . B 2 30.373 8.702 13.772 1 45.18 ? C9 D31 299 A 1 HETATM 8 C C10 D31 . . . B 2 30.734 7.48 12.932 1 46.9 ? C10 D31 299 A 1 HETATM 9 C C20 D31 . . . B 2 29.993 8.999 16.291 1 41.18 ? C20 D31 299 A 1 HETATM 10 C C21 D31 . . . B 2 29.599 10.467 16.259 1 39.34 ? C21 D31 299 A 1 HETATM 11 N N24 D31 . . . B 2 28.74 10.87 15.322 1 37.15 ? N24 D31 299 A 1 HETATM 12 C C25 D31 . . . B 2 28.171 12.158 15.156 1 36.2 ? C25 D31 299 A 1 HETATM 13 C C26 D31 . . . B 2 28.479 13.343 15.985 1 34.99 ? C26 D31 299 A 1 HETATM 14 C C27 D31 . . . B 2 27.861 14.635 15.643 1 34.91 ? C27 D31 299 A 1 HETATM 15 C C28 D31 . . . B 2 26.942 14.728 14.493 1 33.53 ? C28 D31 299 A 1 HETATM 16 C C29 D31 . . . B 2 26.644 13.543 13.68 1 33.79 ? C29 D31 299 A 1 HETATM 17 C C30 D31 . . . B 2 27.255 12.249 14.005 1 34.79 ? C30 D31 299 A 1 HETATM 18 C C31 D31 . . . B 2 25.885 13.331 12.466 1 34.34 ? C31 D31 299 A 1 HETATM 19 C C32 D31 . . . B 2 26.054 11.957 12.058 1 34.82 ? C32 D31 299 A 1 HETATM 20 C C33 D31 . . . B 2 26.885 11.253 13.014 1 34.44 ? C33 D31 299 A 1 HETATM 21 N N34 D31 . . . B 2 24.772 13.024 10.491 1 33.69 ? N34 D31 299 A 1 HETATM 22 C C35 D31 . . . B 2 25.355 11.775 10.802 1 34.93 ? C35 D31 299 A 1 HETATM 23 C C36 D31 . . . B 2 25.202 10.526 9.953 1 37.02 ? C36 D31 299 A 1 HETATM 24 C C37 D31 . . . B 2 24.145 10.58 8.846 1 38.23 ? C37 D31 299 A 1 HETATM 25 C C38 D31 . . . B 2 23.908 9.226 8.18 1 37.1 ? C38 D31 299 A 1 HETATM 26 C C39 D31 . . . B 2 25.222 8.629 7.683 1 39.22 ? C39 D31 299 A 1 HETATM 27 C C40 D31 . . . B 2 26.24 8.484 8.826 1 39.37 ? C40 D31 299 A 1 HETATM 28 C C41 D31 . . . B 2 26.492 9.837 9.502 1 38.6 ? C41 D31 299 A 1 HETATM 29 O O53 D31 . . . B 2 30.026 11.266 17.091 1 40.2 ? O53 D31 299 A 1 HETATM 30 O O54 D31 . . . B 2 27.196 10.067 13.009 1 34.2 ? O54 D31 299 A 1 HETATM 31 N N55 D31 . . . B 2 25.106 14.064 11.544 1 33.83 ? N55 D31 299 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #