data_2B58 # _model_server_result.job_id WWklBIBiOhfUNgjpvMebBA _model_server_result.datetime_utc '2024-12-12 16:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":172}' # _entry.id 2B58 # _exptl.entry_id 2B58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B58 _cell.length_a 63.249 _cell.length_b 63.249 _cell.length_c 81.129 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 0 109.550482 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 29 A TYR 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 30 A MSE 30 1_555 A N GLU 31 A GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ALA 75 A ALA 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 76 A MSE 76 1_555 A N TYR 77 A TYR 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C VAL 96 A VAL 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 97 A MSE 97 1_555 A N SER 98 A SER 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ALA 117 A ALA 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C SER 124 A SER 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 125 A MSE 125 1_555 A N HIS 126 A HIS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C LYS 166 A LYS 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 167 A MSE 167 1_555 A N ALA 168 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2B58 _atom_sites.fract_transf_matrix[1][1] 0.015811 _atom_sites.fract_transf_matrix[1][2] 0.009128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 172 171 COA COA . C 3 HOH A 1 173 172 HOH HOH . C 3 HOH A 2 174 173 HOH HOH . C 3 HOH A 3 175 174 HOH HOH . C 3 HOH A 4 176 175 HOH HOH . C 3 HOH A 5 177 176 HOH HOH . C 3 HOH A 6 178 177 HOH HOH . C 3 HOH A 7 179 178 HOH HOH . C 3 HOH A 8 180 179 HOH HOH . C 3 HOH A 9 181 180 HOH HOH . C 3 HOH A 10 182 181 HOH HOH . C 3 HOH A 11 183 182 HOH HOH . C 3 HOH A 12 184 183 HOH HOH . C 3 HOH A 13 185 184 HOH HOH . C 3 HOH A 14 186 185 HOH HOH . C 3 HOH A 15 187 186 HOH HOH . C 3 HOH A 16 188 187 HOH HOH . C 3 HOH A 17 189 188 HOH HOH . C 3 HOH A 18 190 189 HOH HOH . C 3 HOH A 19 191 190 HOH HOH . C 3 HOH A 20 192 191 HOH HOH . C 3 HOH A 21 193 192 HOH HOH . C 3 HOH A 22 194 193 HOH HOH . C 3 HOH A 23 195 194 HOH HOH . C 3 HOH A 24 196 195 HOH HOH . C 3 HOH A 25 197 196 HOH HOH . C 3 HOH A 26 198 197 HOH HOH . C 3 HOH A 27 199 198 HOH HOH . C 3 HOH A 28 200 199 HOH HOH . C 3 HOH A 29 201 200 HOH HOH . C 3 HOH A 30 202 201 HOH HOH . C 3 HOH A 31 203 202 HOH HOH . C 3 HOH A 32 204 203 HOH HOH . C 3 HOH A 33 205 204 HOH HOH . C 3 HOH A 34 206 205 HOH HOH . C 3 HOH A 35 207 206 HOH HOH . C 3 HOH A 36 208 207 HOH HOH . C 3 HOH A 37 209 208 HOH HOH . C 3 HOH A 38 210 209 HOH HOH . C 3 HOH A 39 211 210 HOH HOH . C 3 HOH A 40 212 211 HOH HOH . C 3 HOH A 41 213 212 HOH HOH . C 3 HOH A 42 214 213 HOH HOH . C 3 HOH A 43 215 214 HOH HOH . C 3 HOH A 44 216 215 HOH HOH . C 3 HOH A 45 217 216 HOH HOH . C 3 HOH A 46 218 217 HOH HOH . C 3 HOH A 47 219 218 HOH HOH . C 3 HOH A 48 220 219 HOH HOH . C 3 HOH A 49 221 220 HOH HOH . C 3 HOH A 50 222 221 HOH HOH . C 3 HOH A 51 223 222 HOH HOH . C 3 HOH A 52 224 223 HOH HOH . C 3 HOH A 53 225 224 HOH HOH . C 3 HOH A 54 226 225 HOH HOH . C 3 HOH A 55 227 226 HOH HOH . C 3 HOH A 56 228 227 HOH HOH . C 3 HOH A 57 229 228 HOH HOH . C 3 HOH A 58 230 229 HOH HOH . C 3 HOH A 59 231 230 HOH HOH . C 3 HOH A 60 232 231 HOH HOH . C 3 HOH A 61 233 232 HOH HOH . C 3 HOH A 62 234 233 HOH HOH . C 3 HOH A 63 235 234 HOH HOH . C 3 HOH A 64 236 235 HOH HOH . C 3 HOH A 65 237 236 HOH HOH . C 3 HOH A 66 238 237 HOH HOH . C 3 HOH A 67 239 238 HOH HOH . C 3 HOH A 68 240 239 HOH HOH . C 3 HOH A 69 241 240 HOH HOH . C 3 HOH A 70 242 241 HOH HOH . C 3 HOH A 71 243 242 HOH HOH . C 3 HOH A 72 244 243 HOH HOH . C 3 HOH A 73 245 244 HOH HOH . C 3 HOH A 74 246 245 HOH HOH . C 3 HOH A 75 247 246 HOH HOH . C 3 HOH A 76 248 247 HOH HOH . C 3 HOH A 77 249 248 HOH HOH . C 3 HOH A 78 250 249 HOH HOH . C 3 HOH A 79 251 250 HOH HOH . C 3 HOH A 80 252 251 HOH HOH . C 3 HOH A 81 253 252 HOH HOH . C 3 HOH A 82 254 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 32.588 56.995 49.176 1 24.99 ? N1A COA 172 A 1 HETATM 2 C C2A COA . . . B 2 32.305 57.053 47.864 1 26.47 ? C2A COA 172 A 1 HETATM 3 N N3A COA . . . B 2 31.116 56.687 47.271 1 26.01 ? N3A COA 172 A 1 HETATM 4 C C4A COA . . . B 2 30.163 56.224 48.19 1 24.64 ? C4A COA 172 A 1 HETATM 5 C C5A COA . . . B 2 30.385 56.137 49.55 1 24.96 ? C5A COA 172 A 1 HETATM 6 C C6A COA . . . B 2 31.69 56.553 50.072 1 26.34 ? C6A COA 172 A 1 HETATM 7 N N6A COA . . . B 2 31.981 56.494 51.386 1 26.22 ? N6A COA 172 A 1 HETATM 8 N N7A COA . . . B 2 29.255 55.64 50.18 1 24.63 ? N7A COA 172 A 1 HETATM 9 C C8A COA . . . B 2 28.411 55.455 49.226 1 22.68 ? C8A COA 172 A 1 HETATM 10 N N9A COA . . . B 2 28.856 55.782 47.972 1 25.42 ? N9A COA 172 A 1 HETATM 11 C C1B COA . . . B 2 28.125 55.777 46.517 1 27.18 ? C1B COA 172 A 1 HETATM 12 C C2B COA . . . B 2 27.602 54.433 45.951 1 30.5 ? C2B COA 172 A 1 HETATM 13 O O2B COA . . . B 2 27.874 54.435 44.567 1 35.23 ? O2B COA 172 A 1 HETATM 14 C C3B COA . . . B 2 25.989 54.362 46.318 1 29.23 ? C3B COA 172 A 1 HETATM 15 O O3B COA . . . B 2 25.662 54.493 44.872 1 29.9 ? O3B COA 172 A 1 HETATM 16 P P3B COA . . . B 2 24.893 53.237 44.326 1 28 ? P3B COA 172 A 1 HETATM 17 O O7A COA . . . B 2 24.616 51.941 45.02 1 29.87 ? O7A COA 172 A 1 HETATM 18 O O8A COA . . . B 2 25.14 53.081 42.874 1 30.8 ? O8A COA 172 A 1 HETATM 19 O O9A COA . . . B 2 23.61 54.147 44.447 1 26.97 ? O9A COA 172 A 1 HETATM 20 C C4B COA . . . B 2 26.017 55.652 47.033 1 28.49 ? C4B COA 172 A 1 HETATM 21 O O4B COA . . . B 2 27.23 56.413 47.195 1 27.35 ? O4B COA 172 A 1 HETATM 22 C C5B COA . . . B 2 24.784 55.752 47.817 1 23.8 ? C5B COA 172 A 1 HETATM 23 O O5B COA . . . B 2 25.488 56.669 48.608 1 17.64 ? O5B COA 172 A 1 HETATM 24 P P1A COA . . . B 2 24.917 57.198 49.979 1 14.29 ? P1A COA 172 A 1 HETATM 25 O O1A COA . . . B 2 26.047 58.086 50.132 1 9.8 ? O1A COA 172 A 1 HETATM 26 O O2A COA . . . B 2 24.685 56.106 51.034 1 8.28 ? O2A COA 172 A 1 HETATM 27 O O3A COA . . . B 2 23.771 58.21 49.479 1 15.22 ? O3A COA 172 A 1 HETATM 28 P P2A COA . . . B 2 23.144 59.467 50.073 1 12.81 ? P2A COA 172 A 1 HETATM 29 O O4A COA . . . B 2 23.554 60.291 48.933 1 15.53 ? O4A COA 172 A 1 HETATM 30 O O5A COA . . . B 2 23.701 59.85 51.376 1 11.26 ? O5A COA 172 A 1 HETATM 31 O O6A COA . . . B 2 21.598 59.275 50.155 1 16.16 ? O6A COA 172 A 1 HETATM 32 C CBP COA . . . B 2 20.049 59.604 48.469 1 22.7 ? CBP COA 172 A 1 HETATM 33 C CCP COA . . . B 2 20.429 59.956 49.948 1 26.33 ? CCP COA 172 A 1 HETATM 34 C CDP COA . . . B 2 21.076 58.52 47.875 1 26.46 ? CDP COA 172 A 1 HETATM 35 C CEP COA . . . B 2 18.603 59.069 48.541 1 26.73 ? CEP COA 172 A 1 HETATM 36 C CAP COA . . . B 2 20.335 61.039 47.747 1 19.77 ? CAP COA 172 A 1 HETATM 37 O OAP COA . . . B 2 20.191 60.879 46.279 1 27.74 ? OAP COA 172 A 1 HETATM 38 C C9P COA . . . B 2 19.319 62.261 47.979 1 14.06 ? C9P COA 172 A 1 HETATM 39 O O9P COA . . . B 2 18.828 62.969 48.84 1 11.31 ? O9P COA 172 A 1 HETATM 40 N N8P COA . . . B 2 19.003 62.39 46.634 1 9.78 ? N8P COA 172 A 1 HETATM 41 C C7P COA . . . B 2 18.043 63.382 46.093 1 13.12 ? C7P COA 172 A 1 HETATM 42 C C6P COA . . . B 2 16.587 63.181 46.616 1 13.96 ? C6P COA 172 A 1 HETATM 43 C C5P COA . . . B 2 16.042 61.825 46.275 1 15.97 ? C5P COA 172 A 1 HETATM 44 O O5P COA . . . B 2 16.23 61.318 45.136 1 17.81 ? O5P COA 172 A 1 HETATM 45 N N4P COA . . . B 2 15.355 61.139 47.18 1 18.07 ? N4P COA 172 A 1 HETATM 46 C C3P COA . . . B 2 14.717 59.813 47.122 1 24.05 ? C3P COA 172 A 1 HETATM 47 C C2P COA . . . B 2 13.352 60.016 46.4 1 27.5 ? C2P COA 172 A 1 HETATM 48 S S1P COA . . . B 2 12.327 61.57 46.039 1 38.75 ? S1P COA 172 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #