data_2B5E # _model_server_result.job_id gOA5a9ELzcJppnkNTIJ3vQ _model_server_result.datetime_utc '2024-11-05 00:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":524}' # _entry.id 2B5E # _exptl.entry_id 2B5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B5E _cell.length_a 136.56 _cell.length_b 136.56 _cell.length_c 69.524 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 61 1_555 A SG CYS 46 A CYS 64 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.115 ? disulf ? disulf2 A SG CYS 72 A CYS 90 1_555 A SG CYS 79 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 B BA BA . A BA 1 1_555 A OE2 GLU 105 A GLU 123 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.615 ? metalc ? metalc2 B BA BA . A BA 1 1_555 A OE1 GLU 176 A GLU 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.711 ? metalc ? metalc3 B BA BA . A BA 1 1_555 A OE2 GLU 176 A GLU 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc4 B BA BA . A BA 1 1_555 E O HOH . A HOH 555 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc5 B BA BA . A BA 1 1_555 E O HOH . A HOH 599 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2B5E _atom_sites.fract_transf_matrix[1][1] 0.007323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA A 1 1 1 BA BA . C 3 GOL A 1 523 146 GOL GOL . D 3 GOL A 1 524 147 GOL GOL . E 4 HOH A 1 525 2 HOH HOH . E 4 HOH A 2 526 3 HOH HOH . E 4 HOH A 3 527 4 HOH HOH . E 4 HOH A 4 528 5 HOH HOH . E 4 HOH A 5 529 6 HOH HOH . E 4 HOH A 6 530 7 HOH HOH . E 4 HOH A 7 531 8 HOH HOH . E 4 HOH A 8 532 9 HOH HOH . E 4 HOH A 9 533 10 HOH HOH . E 4 HOH A 10 534 11 HOH HOH . E 4 HOH A 11 535 12 HOH HOH . E 4 HOH A 12 536 13 HOH HOH . E 4 HOH A 13 537 14 HOH HOH . E 4 HOH A 14 538 15 HOH HOH . E 4 HOH A 15 539 16 HOH HOH . E 4 HOH A 16 540 17 HOH HOH . E 4 HOH A 17 541 18 HOH HOH . E 4 HOH A 18 542 19 HOH HOH . E 4 HOH A 19 543 20 HOH HOH . E 4 HOH A 20 544 21 HOH HOH . E 4 HOH A 21 545 22 HOH HOH . E 4 HOH A 22 546 23 HOH HOH . E 4 HOH A 23 547 24 HOH HOH . E 4 HOH A 24 548 25 HOH HOH . E 4 HOH A 25 549 26 HOH HOH . E 4 HOH A 26 550 27 HOH HOH . E 4 HOH A 27 551 28 HOH HOH . E 4 HOH A 28 552 29 HOH HOH . E 4 HOH A 29 553 30 HOH HOH . E 4 HOH A 30 554 31 HOH HOH . E 4 HOH A 31 555 32 HOH HOH . E 4 HOH A 32 556 33 HOH HOH . E 4 HOH A 33 557 34 HOH HOH . E 4 HOH A 34 558 35 HOH HOH . E 4 HOH A 35 559 36 HOH HOH . E 4 HOH A 36 560 37 HOH HOH . E 4 HOH A 37 561 38 HOH HOH . E 4 HOH A 38 562 39 HOH HOH . E 4 HOH A 39 563 40 HOH HOH . E 4 HOH A 40 564 41 HOH HOH . E 4 HOH A 41 565 42 HOH HOH . E 4 HOH A 42 566 43 HOH HOH . E 4 HOH A 43 567 44 HOH HOH . E 4 HOH A 44 568 45 HOH HOH . E 4 HOH A 45 569 46 HOH HOH . E 4 HOH A 46 570 47 HOH HOH . E 4 HOH A 47 571 48 HOH HOH . E 4 HOH A 48 572 49 HOH HOH . E 4 HOH A 49 573 50 HOH HOH . E 4 HOH A 50 574 51 HOH HOH . E 4 HOH A 51 575 52 HOH HOH . E 4 HOH A 52 576 53 HOH HOH . E 4 HOH A 53 577 54 HOH HOH . E 4 HOH A 54 578 55 HOH HOH . E 4 HOH A 55 579 56 HOH HOH . E 4 HOH A 56 580 57 HOH HOH . E 4 HOH A 57 581 58 HOH HOH . E 4 HOH A 58 582 59 HOH HOH . E 4 HOH A 59 583 60 HOH HOH . E 4 HOH A 60 584 61 HOH HOH . E 4 HOH A 61 585 62 HOH HOH . E 4 HOH A 62 586 63 HOH HOH . E 4 HOH A 63 587 64 HOH HOH . E 4 HOH A 64 588 66 HOH HOH . E 4 HOH A 65 589 67 HOH HOH . E 4 HOH A 66 590 68 HOH HOH . E 4 HOH A 67 591 69 HOH HOH . E 4 HOH A 68 592 70 HOH HOH . E 4 HOH A 69 593 71 HOH HOH . E 4 HOH A 70 594 72 HOH HOH . E 4 HOH A 71 595 73 HOH HOH . E 4 HOH A 72 596 74 HOH HOH . E 4 HOH A 73 597 75 HOH HOH . E 4 HOH A 74 598 76 HOH HOH . E 4 HOH A 75 599 77 HOH HOH . E 4 HOH A 76 600 78 HOH HOH . E 4 HOH A 77 601 79 HOH HOH . E 4 HOH A 78 602 80 HOH HOH . E 4 HOH A 79 603 81 HOH HOH . E 4 HOH A 80 604 82 HOH HOH . E 4 HOH A 81 605 83 HOH HOH . E 4 HOH A 82 606 84 HOH HOH . E 4 HOH A 83 607 85 HOH HOH . E 4 HOH A 84 608 86 HOH HOH . E 4 HOH A 85 609 87 HOH HOH . E 4 HOH A 86 610 88 HOH HOH . E 4 HOH A 87 611 89 HOH HOH . E 4 HOH A 88 612 90 HOH HOH . E 4 HOH A 89 613 91 HOH HOH . E 4 HOH A 90 614 92 HOH HOH . E 4 HOH A 91 615 93 HOH HOH . E 4 HOH A 92 616 94 HOH HOH . E 4 HOH A 93 617 95 HOH HOH . E 4 HOH A 94 618 96 HOH HOH . E 4 HOH A 95 619 97 HOH HOH . E 4 HOH A 96 620 98 HOH HOH . E 4 HOH A 97 621 99 HOH HOH . E 4 HOH A 98 622 100 HOH HOH . E 4 HOH A 99 623 101 HOH HOH . E 4 HOH A 100 624 102 HOH HOH . E 4 HOH A 101 625 103 HOH HOH . E 4 HOH A 102 626 104 HOH HOH . E 4 HOH A 103 627 106 HOH HOH . E 4 HOH A 104 628 107 HOH HOH . E 4 HOH A 105 629 108 HOH HOH . E 4 HOH A 106 630 109 HOH HOH . E 4 HOH A 107 631 110 HOH HOH . E 4 HOH A 108 632 111 HOH HOH . E 4 HOH A 109 633 112 HOH HOH . E 4 HOH A 110 634 113 HOH HOH . E 4 HOH A 111 635 114 HOH HOH . E 4 HOH A 112 636 115 HOH HOH . E 4 HOH A 113 637 116 HOH HOH . E 4 HOH A 114 638 117 HOH HOH . E 4 HOH A 115 639 118 HOH HOH . E 4 HOH A 116 640 119 HOH HOH . E 4 HOH A 117 641 120 HOH HOH . E 4 HOH A 118 642 121 HOH HOH . E 4 HOH A 119 643 122 HOH HOH . E 4 HOH A 120 644 123 HOH HOH . E 4 HOH A 121 645 124 HOH HOH . E 4 HOH A 122 646 125 HOH HOH . E 4 HOH A 123 647 126 HOH HOH . E 4 HOH A 124 648 127 HOH HOH . E 4 HOH A 125 649 128 HOH HOH . E 4 HOH A 126 650 129 HOH HOH . E 4 HOH A 127 651 130 HOH HOH . E 4 HOH A 128 652 131 HOH HOH . E 4 HOH A 129 653 132 HOH HOH . E 4 HOH A 130 654 134 HOH HOH . E 4 HOH A 131 655 137 HOH HOH . E 4 HOH A 132 656 139 HOH HOH . E 4 HOH A 133 657 140 HOH HOH . E 4 HOH A 134 658 141 HOH HOH . E 4 HOH A 135 659 142 HOH HOH . E 4 HOH A 136 660 143 HOH HOH . E 4 HOH A 137 661 144 HOH HOH . E 4 HOH A 138 662 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -11.039 -12.623 -24.608 1 82.18 ? C1 GOL 524 A 1 HETATM 2 O O1 GOL . . . D 3 -11.927 -13.575 -24.014 1 76.97 ? O1 GOL 524 A 1 HETATM 3 C C2 GOL . . . D 3 -11.676 -11.232 -24.878 1 83.59 ? C2 GOL 524 A 1 HETATM 4 O O2 GOL . . . D 3 -10.97 -10.177 -24.263 1 82.32 ? O2 GOL 524 A 1 HETATM 5 C C3 GOL . . . D 3 -11.789 -10.878 -26.354 1 85.2 ? C3 GOL 524 A 1 HETATM 6 O O3 GOL . . . D 3 -11.852 -9.468 -26.545 1 86.86 ? O3 GOL 524 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #