data_2B5J
#
_model_server_result.job_id            BYNsMyj0WEgF8wn6anIpeQ 
_model_server_result.datetime_utc      '2025-03-04 16:01:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":562}' 
#
_entry.id    2B5J 
#
_exptl.entry_id    2B5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              406.218 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-3-{3-[(5-ETHYL-3-IODO-6-METHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY]PHENYL}ACRYLONITRILE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.47 
_cell.angle_gamma         90 
_cell.entry_id            2B5J 
_cell.length_a            224.59 
_cell.length_b            69.3 
_cell.length_c            105.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 A OE2 GLU 478 A GLU 478 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc3 A OD1 ASP 498 A ASP 498 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc4 A OD2 ASP 498 A ASP 498 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc5 C MN MN . A MN 561 1_555 E O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C17 H15 I N2 O2' 
_chem_comp.formula_weight    406.218 
_chem_comp.id                3AC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-3-{3-[(5-ETHYL-3-IODO-6-METHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY]PHENYL}ACRYLONITRILE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C11 3AC sing 1 n n 
O11 C21 3AC sing 2 n n 
C11 C12 3AC doub 3 n y 
C11 C16 3AC sing 4 n y 
C12 I12 3AC sing 5 n n 
C12 C13 3AC sing 6 n y 
C13 O13 3AC doub 7 n n 
C13 N14 3AC sing 8 n y 
N14 C15 3AC sing 9 n y 
N14 H14 3AC sing 10 n n 
C15 C51 3AC sing 11 n n 
C15 C16 3AC doub 12 n y 
C51 H511 3AC sing 13 n n 
C51 H512 3AC sing 14 n n 
C51 H513 3AC sing 15 n n 
C16 C61 3AC sing 16 n n 
C61 C62 3AC sing 17 n n 
C61 H611 3AC sing 18 n n 
C61 H612 3AC sing 19 n n 
C62 H621 3AC sing 20 n n 
C62 H622 3AC sing 21 n n 
C62 H623 3AC sing 22 n n 
C21 C22 3AC doub 23 n y 
C21 C26 3AC sing 24 n y 
C22 C23 3AC sing 25 n y 
C22 H22 3AC sing 26 n n 
C23 C24 3AC doub 27 n y 
C23 H23 3AC sing 28 n n 
C24 C25 3AC sing 29 n y 
C24 H24 3AC sing 30 n n 
C25 C26 3AC doub 31 n y 
C25 C27 3AC sing 32 n n 
C26 H26 3AC sing 33 n n 
C27 C28 3AC doub 34 e n 
C27 H27 3AC sing 35 n n 
C28 C29 3AC sing 36 n n 
C28 H28 3AC sing 37 n n 
N29 C29 3AC trip 38 n n 
#
_atom_sites.entry_id                     2B5J 
_atom_sites.fract_transf_matrix[1][1]    0.004453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001316 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 561 2 MN MN . 
D 4 3AC A 1 562 1 3AC 3AC . 
E 5 HOH A 1 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 3AC . . . D 4 143.938 -26.874 74.266 1 84.48 ? O11 3AC 562 A 1 
HETATM 2 C C11 3AC . . . D 4 142.942 -26.914 73.282 1 81.41 ? C11 3AC 562 A 1 
HETATM 3 C C12 3AC . . . D 4 143.197 -26.365 72 1 82.09 ? C12 3AC 562 A 1 
HETATM 4 I I12 3AC . . . D 4 144.99 -25.53 71.543 1 99.88 ? I12 3AC 562 A 1 
HETATM 5 C C13 3AC . . . D 4 142.206 -26.406 71.018 1 81.6 ? C13 3AC 562 A 1 
HETATM 6 O O13 3AC . . . D 4 142.454 -25.864 69.76 1 78.1 ? O13 3AC 562 A 1 
HETATM 7 N N14 3AC . . . D 4 141.001 -26.968 71.286 1 77.79 ? N14 3AC 562 A 1 
HETATM 8 C C15 3AC . . . D 4 140.699 -27.517 72.5 1 76.68 ? C15 3AC 562 A 1 
HETATM 9 C C51 3AC . . . D 4 139.321 -28.124 72.684 1 74.1 ? C51 3AC 562 A 1 
HETATM 10 C C16 3AC . . . D 4 141.659 -27.507 73.559 1 78.64 ? C16 3AC 562 A 1 
HETATM 11 C C61 3AC . . . D 4 141.326 -28.124 74.949 1 78.31 ? C61 3AC 562 A 1 
HETATM 12 C C62 3AC . . . D 4 142.194 -29.371 75.25 1 79.15 ? C62 3AC 562 A 1 
HETATM 13 C C21 3AC . . . D 4 143.93 -25.907 75.314 1 91.47 ? C21 3AC 562 A 1 
HETATM 14 C C22 3AC . . . D 4 142.931 -24.883 75.47 1 93.58 ? C22 3AC 562 A 1 
HETATM 15 C C23 3AC . . . D 4 143 -23.968 76.56 1 96.81 ? C23 3AC 562 A 1 
HETATM 16 C C24 3AC . . . D 4 144.066 -24.072 77.508 1 97.49 ? C24 3AC 562 A 1 
HETATM 17 C C25 3AC . . . D 4 145.061 -25.089 77.355 1 96.68 ? C25 3AC 562 A 1 
HETATM 18 C C26 3AC . . . D 4 144.982 -25.988 76.266 1 95.06 ? C26 3AC 562 A 1 
HETATM 19 C C27 3AC . . . D 4 146.216 -25.219 78.35 1 96.27 ? C27 3AC 562 A 1 
HETATM 20 C C28 3AC . . . D 4 145.882 -26.107 79.504 1 98.37 ? C28 3AC 562 A 1 
HETATM 21 N N29 3AC . . . D 4 147.1 -25.744 81.786 1 100.99 ? N29 3AC 562 A 1 
HETATM 22 C C29 3AC . . . D 4 146.562 -25.904 80.765 1 101.13 ? C29 3AC 562 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#