data_2B5O # _model_server_result.job_id Tr43_jwHAFppBprMHGq9jQ _model_server_result.datetime_utc '2024-10-14 05:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":403}' # _entry.id 2B5O # _exptl.entry_id 2B5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B5O _cell.length_a 121.985 _cell.length_b 121.985 _cell.length_c 74.729 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 O N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2B5O _atom_sites.fract_transf_matrix[1][1] 0.008198 _atom_sites.fract_transf_matrix[1][2] 0.004733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 407 407 SO4 SO4 . D 2 SO4 A 1 408 408 SO4 SO4 . E 2 SO4 A 1 409 409 SO4 SO4 . F 2 SO4 A 1 410 410 SO4 SO4 . G 2 SO4 A 1 414 414 SO4 SO4 . H 3 FAD A 1 403 403 FAD FAD . I 2 SO4 B 1 405 405 SO4 SO4 . J 2 SO4 B 1 406 406 SO4 SO4 . K 2 SO4 B 1 411 411 SO4 SO4 . L 2 SO4 B 1 412 412 SO4 SO4 . M 2 SO4 B 1 413 413 SO4 SO4 . N 2 SO4 B 1 415 415 SO4 SO4 . O 3 FAD B 1 403 403 FAD FAD . P 4 HOH A 1 416 416 HOH HOH . P 4 HOH A 2 417 417 HOH HOH . P 4 HOH A 3 419 419 HOH HOH . P 4 HOH A 4 421 421 HOH HOH . P 4 HOH A 5 426 426 HOH HOH . P 4 HOH A 6 427 427 HOH HOH . P 4 HOH A 7 429 429 HOH HOH . P 4 HOH A 8 431 431 HOH HOH . P 4 HOH A 9 432 432 HOH HOH . P 4 HOH A 10 433 433 HOH HOH . P 4 HOH A 11 435 435 HOH HOH . P 4 HOH A 12 438 438 HOH HOH . P 4 HOH A 13 439 439 HOH HOH . P 4 HOH A 14 441 441 HOH HOH . P 4 HOH A 15 443 443 HOH HOH . P 4 HOH A 16 444 444 HOH HOH . P 4 HOH A 17 446 446 HOH HOH . P 4 HOH A 18 447 447 HOH HOH . P 4 HOH A 19 449 449 HOH HOH . P 4 HOH A 20 450 450 HOH HOH . P 4 HOH A 21 451 451 HOH HOH . P 4 HOH A 22 453 453 HOH HOH . P 4 HOH A 23 454 454 HOH HOH . P 4 HOH A 24 455 455 HOH HOH . P 4 HOH A 25 457 457 HOH HOH . P 4 HOH A 26 458 458 HOH HOH . P 4 HOH A 27 459 459 HOH HOH . P 4 HOH A 28 460 460 HOH HOH . P 4 HOH A 29 461 461 HOH HOH . P 4 HOH A 30 463 463 HOH HOH . P 4 HOH A 31 464 464 HOH HOH . P 4 HOH A 32 465 465 HOH HOH . P 4 HOH A 33 466 466 HOH HOH . P 4 HOH A 34 470 470 HOH HOH . P 4 HOH A 35 471 471 HOH HOH . P 4 HOH A 36 472 472 HOH HOH . P 4 HOH A 37 473 473 HOH HOH . P 4 HOH A 38 474 474 HOH HOH . P 4 HOH A 39 475 475 HOH HOH . P 4 HOH A 40 479 479 HOH HOH . P 4 HOH A 41 480 480 HOH HOH . P 4 HOH A 42 483 483 HOH HOH . P 4 HOH A 43 485 485 HOH HOH . P 4 HOH A 44 488 488 HOH HOH . P 4 HOH A 45 489 489 HOH HOH . P 4 HOH A 46 491 491 HOH HOH . P 4 HOH A 47 492 492 HOH HOH . P 4 HOH A 48 494 494 HOH HOH . P 4 HOH A 49 498 498 HOH HOH . P 4 HOH A 50 500 500 HOH HOH . P 4 HOH A 51 501 501 HOH HOH . P 4 HOH A 52 502 502 HOH HOH . P 4 HOH A 53 503 503 HOH HOH . P 4 HOH A 54 504 504 HOH HOH . P 4 HOH A 55 507 507 HOH HOH . P 4 HOH A 56 509 509 HOH HOH . Q 4 HOH B 1 418 418 HOH HOH . Q 4 HOH B 2 420 420 HOH HOH . Q 4 HOH B 3 422 422 HOH HOH . Q 4 HOH B 4 423 423 HOH HOH . Q 4 HOH B 5 424 424 HOH HOH . Q 4 HOH B 6 425 425 HOH HOH . Q 4 HOH B 7 428 428 HOH HOH . Q 4 HOH B 8 430 430 HOH HOH . Q 4 HOH B 9 434 434 HOH HOH . Q 4 HOH B 10 436 436 HOH HOH . Q 4 HOH B 11 437 437 HOH HOH . Q 4 HOH B 12 442 442 HOH HOH . Q 4 HOH B 13 445 445 HOH HOH . Q 4 HOH B 14 448 448 HOH HOH . Q 4 HOH B 15 452 452 HOH HOH . Q 4 HOH B 16 456 456 HOH HOH . Q 4 HOH B 17 462 462 HOH HOH . Q 4 HOH B 18 467 467 HOH HOH . Q 4 HOH B 19 468 468 HOH HOH . Q 4 HOH B 20 469 469 HOH HOH . Q 4 HOH B 21 476 476 HOH HOH . Q 4 HOH B 22 477 477 HOH HOH . Q 4 HOH B 23 478 478 HOH HOH . Q 4 HOH B 24 481 481 HOH HOH . Q 4 HOH B 25 482 482 HOH HOH . Q 4 HOH B 26 484 484 HOH HOH . Q 4 HOH B 27 486 486 HOH HOH . Q 4 HOH B 28 487 487 HOH HOH . Q 4 HOH B 29 490 490 HOH HOH . Q 4 HOH B 30 493 493 HOH HOH . Q 4 HOH B 31 495 495 HOH HOH . Q 4 HOH B 32 497 497 HOH HOH . Q 4 HOH B 33 499 499 HOH HOH . Q 4 HOH B 34 505 505 HOH HOH . Q 4 HOH B 35 506 506 HOH HOH . Q 4 HOH B 36 508 508 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 3 -11.01 24.614 5.882 1 32.44 ? PA FAD 403 B 1 HETATM 2 O O1A FAD . . . O 3 -10.933 23.782 7.117 1 33.28 ? O1A FAD 403 B 1 HETATM 3 O O2A FAD . . . O 3 -10.116 24.013 4.845 1 34.06 ? O2A FAD 403 B 1 HETATM 4 O O5B FAD . . . O 3 -10.702 26.125 6.257 1 28.84 ? O5B FAD 403 B 1 HETATM 5 C C5B FAD . . . O 3 -11.259 26.661 7.43 1 36.71 ? C5B FAD 403 B 1 HETATM 6 C C4B FAD . . . O 3 -10.089 26.899 8.373 1 29.45 ? C4B FAD 403 B 1 HETATM 7 O O4B FAD . . . O 3 -9.226 27.901 7.869 1 43.3 ? O4B FAD 403 B 1 HETATM 8 C C3B FAD . . . O 3 -10.529 27.318 9.766 1 33.09 ? C3B FAD 403 B 1 HETATM 9 O O3B FAD . . . O 3 -10.547 26.23 10.652 1 44.62 ? O3B FAD 403 B 1 HETATM 10 C C2B FAD . . . O 3 -9.44 28.284 10.189 1 43.63 ? C2B FAD 403 B 1 HETATM 11 O O2B FAD . . . O 3 -8.467 27.533 10.881 1 37.69 ? O2B FAD 403 B 1 HETATM 12 C C1B FAD . . . O 3 -8.994 28.873 8.858 1 31.5 ? C1B FAD 403 B 1 HETATM 13 N N9A FAD . . . O 3 -9.908 30.003 8.683 1 36.72 ? N9A FAD 403 B 1 HETATM 14 C C8A FAD . . . O 3 -11.281 30.2 8.637 1 32.55 ? C8A FAD 403 B 1 HETATM 15 N N7A FAD . . . O 3 -11.537 31.55 8.567 1 30.73 ? N7A FAD 403 B 1 HETATM 16 C C5A FAD . . . O 3 -10.332 32.17 8.589 1 27.09 ? C5A FAD 403 B 1 HETATM 17 C C6A FAD . . . O 3 -9.932 33.477 8.497 1 27.66 ? C6A FAD 403 B 1 HETATM 18 N N6A FAD . . . O 3 -10.81 34.406 8.158 1 29.46 ? N6A FAD 403 B 1 HETATM 19 N N1A FAD . . . O 3 -8.584 33.755 8.518 1 49.15 ? N1A FAD 403 B 1 HETATM 20 C C2A FAD . . . O 3 -7.629 32.759 8.625 1 40.93 ? C2A FAD 403 B 1 HETATM 21 N N3A FAD . . . O 3 -8.013 31.445 8.705 1 22.76 ? N3A FAD 403 B 1 HETATM 22 C C4A FAD . . . O 3 -9.322 31.218 8.677 1 18.2 ? C4A FAD 403 B 1 HETATM 23 N N1 FAD . . . O 3 -20.717 23.552 7.906 1 32.09 ? N1 FAD 403 B 1 HETATM 24 C C2 FAD . . . O 3 -21.733 23.705 7.001 1 32.2 ? C2 FAD 403 B 1 HETATM 25 O O2 FAD . . . O 3 -21.546 24.378 5.983 1 31.59 ? O2 FAD 403 B 1 HETATM 26 N N3 FAD . . . O 3 -22.956 23.126 7.266 1 30.17 ? N3 FAD 403 B 1 HETATM 27 C C4 FAD . . . O 3 -23.188 22.379 8.39 1 31.28 ? C4 FAD 403 B 1 HETATM 28 O O4 FAD . . . O 3 -24.285 21.875 8.632 1 32.41 ? O4 FAD 403 B 1 HETATM 29 C C4X FAD . . . O 3 -22.155 22.231 9.294 1 39.49 ? C4X FAD 403 B 1 HETATM 30 N N5 FAD . . . O 3 -22.341 21.478 10.425 1 33.12 ? N5 FAD 403 B 1 HETATM 31 C C5X FAD . . . O 3 -21.315 21.299 11.321 1 36.41 ? C5X FAD 403 B 1 HETATM 32 C C6 FAD . . . O 3 -21.542 20.536 12.464 1 31.34 ? C6 FAD 403 B 1 HETATM 33 C C7 FAD . . . O 3 -20.513 20.355 13.383 1 38.42 ? C7 FAD 403 B 1 HETATM 34 C C7M FAD . . . O 3 -20.714 19.346 14.489 1 38.04 ? C7M FAD 403 B 1 HETATM 35 C C8 FAD . . . O 3 -19.268 20.931 13.129 1 35.4 ? C8 FAD 403 B 1 HETATM 36 C C8M FAD . . . O 3 -18.241 21.042 14.217 1 26.48 ? C8M FAD 403 B 1 HETATM 37 C C9 FAD . . . O 3 -19.059 21.69 11.987 1 30.86 ? C9 FAD 403 B 1 HETATM 38 C C9A FAD . . . O 3 -20.086 21.889 11.079 1 32.99 ? C9A FAD 403 B 1 HETATM 39 N N10 FAD . . . O 3 -19.909 22.633 9.936 1 35.95 ? N10 FAD 403 B 1 HETATM 40 C C10 FAD . . . O 3 -20.933 22.817 9.048 1 36.05 ? C10 FAD 403 B 1 HETATM 41 C C1' FAD . . . O 3 -18.606 23.274 9.59 1 34.66 ? C1' FAD 403 B 1 HETATM 42 C C2' FAD . . . O 3 -17.796 22.256 8.807 1 29.14 ? C2' FAD 403 B 1 HETATM 43 O O2' FAD . . . O 3 -17.393 21.13 9.553 1 25.24 ? O2' FAD 403 B 1 HETATM 44 C C3' FAD . . . O 3 -16.513 22.889 8.315 1 26.36 ? C3' FAD 403 B 1 HETATM 45 O O3' FAD . . . O 3 -15.931 23.391 9.486 1 33.25 ? O3' FAD 403 B 1 HETATM 46 C C4' FAD . . . O 3 -16.688 23.969 7.247 1 32.25 ? C4' FAD 403 B 1 HETATM 47 O O4' FAD . . . O 3 -17.263 23.457 6.053 1 33.07 ? O4' FAD 403 B 1 HETATM 48 C C5' FAD . . . O 3 -15.324 24.54 6.871 1 27.73 ? C5' FAD 403 B 1 HETATM 49 O O5' FAD . . . O 3 -14.53 23.493 6.347 1 29.78 ? O5' FAD 403 B 1 HETATM 50 P P FAD . . . O 3 -13.577 23.713 5.076 1 32.68 ? P FAD 403 B 1 HETATM 51 O O1P FAD . . . O 3 -12.841 22.412 4.967 1 25 ? O1P FAD 403 B 1 HETATM 52 O O2P FAD . . . O 3 -14.403 24.078 3.869 1 31.67 ? O2P FAD 403 B 1 HETATM 53 O O3P FAD . . . O 3 -12.528 24.897 5.399 1 41.68 ? O3P FAD 403 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #