data_2B5S
#
_model_server_result.job_id            YRVq2WII22H6kXPw9e69jA 
_model_server_result.datetime_utc      '2024-10-21 02:34:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b5s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":204}' 
#
_entry.id    2B5S 
#
_exptl.entry_id    2B5S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              100.202 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEPTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2B5S 
_cell.length_a            102.352 
_cell.length_b            102.352 
_cell.length_c            74.236 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B5S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,C,D,G 3 1,2 
B,E,F,H 3 3,4 
A,C,D,G 4 1 
B,E,F,H 4 4 
B,E,F,H 5 1,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -37.118 
3 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 12.372667 
4 'crystal symmetry operation' 9_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -49.490667 
5 'crystal symmetry operation' 10_554 -y,-x,-z-5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -61.863333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 3 1_555 A SG CYS 51 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 14 A CYS 13 1_555 A SG CYS 28 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 29 A CYS 28 1_555 A SG CYS 74 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 49 A CYS 48 1_555 A SG CYS 88 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 4 B CYS 3 1_555 B SG CYS 51 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 B SG CYS 14 B CYS 13 1_555 B SG CYS 28 B CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 B SG CYS 29 B CYS 28 1_555 B SG CYS 74 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 B SG CYS 49 B CYS 48 1_555 B SG CYS 88 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C7 H16' 
_chem_comp.formula_weight    100.202 
_chem_comp.id                HP6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEPTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C21 HP6 sing 150 n n 
C20 H201 HP6 sing 151 n n 
C20 H202 HP6 sing 152 n n 
C20 H203 HP6 sing 153 n n 
C21 C22 HP6 sing 154 n n 
C21 H211 HP6 sing 155 n n 
C21 H212 HP6 sing 156 n n 
C22 C23 HP6 sing 157 n n 
C22 H221 HP6 sing 158 n n 
C22 H222 HP6 sing 159 n n 
C23 C24 HP6 sing 160 n n 
C23 H231 HP6 sing 161 n n 
C23 H232 HP6 sing 162 n n 
C24 C25 HP6 sing 163 n n 
C24 H241 HP6 sing 164 n n 
C24 H242 HP6 sing 165 n n 
C25 C26 HP6 sing 166 n n 
C25 H251 HP6 sing 167 n n 
C25 H252 HP6 sing 168 n n 
C26 H261 HP6 sing 169 n n 
C26 H262 HP6 sing 170 n n 
C26 H263 HP6 sing 171 n n 
#
_atom_sites.entry_id                     2B5S 
_atom_sites.fract_transf_matrix[1][1]    0.00977 
_atom_sites.fract_transf_matrix[1][2]    0.005641 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DAO A 1 202 2 DAO LAU . 
D 3 HP6 A 1 204 1 HP6 LIG . 
E 4 SO4 B 1 203 1 SO4 SO4 . 
F 2 DAO B 1 201 1 DAO LAU . 
G 5 HOH A 1 205 1 HOH HOH . 
G 5 HOH A 2 206 2 HOH HOH . 
G 5 HOH A 3 207 8 HOH HOH . 
G 5 HOH A 4 208 13 HOH HOH . 
G 5 HOH A 5 209 14 HOH HOH . 
G 5 HOH A 6 210 15 HOH HOH . 
G 5 HOH A 7 211 18 HOH HOH . 
G 5 HOH A 8 212 19 HOH HOH . 
G 5 HOH A 9 213 20 HOH HOH . 
G 5 HOH A 10 214 23 HOH HOH . 
G 5 HOH A 11 215 25 HOH HOH . 
G 5 HOH A 12 216 26 HOH HOH . 
G 5 HOH A 13 217 28 HOH HOH . 
G 5 HOH A 14 218 29 HOH HOH . 
G 5 HOH A 15 219 31 HOH HOH . 
G 5 HOH A 16 220 33 HOH HOH . 
G 5 HOH A 17 221 38 HOH HOH . 
G 5 HOH A 18 222 40 HOH HOH . 
G 5 HOH A 19 223 42 HOH HOH . 
G 5 HOH A 20 224 43 HOH HOH . 
G 5 HOH A 21 225 45 HOH HOH . 
G 5 HOH A 22 226 47 HOH HOH . 
G 5 HOH A 23 227 48 HOH HOH . 
G 5 HOH A 24 228 50 HOH HOH . 
G 5 HOH A 25 229 52 HOH HOH . 
G 5 HOH A 26 230 60 HOH HOH . 
G 5 HOH A 27 231 63 HOH HOH . 
G 5 HOH A 28 232 64 HOH HOH . 
G 5 HOH A 29 233 66 HOH HOH . 
G 5 HOH A 30 234 67 HOH HOH . 
G 5 HOH A 31 235 68 HOH HOH . 
G 5 HOH A 32 236 70 HOH HOH . 
G 5 HOH A 33 237 74 HOH HOH . 
G 5 HOH A 34 238 75 HOH HOH . 
G 5 HOH A 35 239 83 HOH HOH . 
G 5 HOH A 36 240 84 HOH HOH . 
G 5 HOH A 37 241 85 HOH HOH . 
G 5 HOH A 38 242 89 HOH HOH . 
G 5 HOH A 39 243 90 HOH HOH . 
G 5 HOH A 40 244 91 HOH HOH . 
G 5 HOH A 41 245 92 HOH HOH . 
G 5 HOH A 42 246 93 HOH HOH . 
G 5 HOH A 43 247 95 HOH HOH . 
G 5 HOH A 44 248 96 HOH HOH . 
G 5 HOH A 45 249 98 HOH HOH . 
G 5 HOH A 46 250 104 HOH HOH . 
G 5 HOH A 47 251 105 HOH HOH . 
G 5 HOH A 48 252 106 HOH HOH . 
G 5 HOH A 49 253 108 HOH HOH . 
G 5 HOH A 50 254 112 HOH HOH . 
G 5 HOH A 51 255 116 HOH HOH . 
G 5 HOH A 52 256 117 HOH HOH . 
G 5 HOH A 53 257 119 HOH HOH . 
G 5 HOH A 54 258 120 HOH HOH . 
G 5 HOH A 55 259 122 HOH HOH . 
G 5 HOH A 56 260 123 HOH HOH . 
G 5 HOH A 57 261 125 HOH HOH . 
G 5 HOH A 58 262 126 HOH HOH . 
G 5 HOH A 59 263 131 HOH HOH . 
G 5 HOH A 60 264 132 HOH HOH . 
G 5 HOH A 61 265 135 HOH HOH . 
G 5 HOH A 62 266 137 HOH HOH . 
G 5 HOH A 63 267 138 HOH HOH . 
G 5 HOH A 64 268 139 HOH HOH . 
G 5 HOH A 65 269 140 HOH HOH . 
G 5 HOH A 66 270 142 HOH HOH . 
G 5 HOH A 67 271 143 HOH HOH . 
G 5 HOH A 68 272 145 HOH HOH . 
G 5 HOH A 69 273 147 HOH HOH . 
H 5 HOH B 1 204 3 HOH HOH . 
H 5 HOH B 2 205 4 HOH HOH . 
H 5 HOH B 3 206 5 HOH HOH . 
H 5 HOH B 4 207 6 HOH HOH . 
H 5 HOH B 5 208 7 HOH HOH . 
H 5 HOH B 6 209 9 HOH HOH . 
H 5 HOH B 7 210 10 HOH HOH . 
H 5 HOH B 8 211 11 HOH HOH . 
H 5 HOH B 9 212 12 HOH HOH . 
H 5 HOH B 10 213 16 HOH HOH . 
H 5 HOH B 11 214 17 HOH HOH . 
H 5 HOH B 12 215 21 HOH HOH . 
H 5 HOH B 13 216 22 HOH HOH . 
H 5 HOH B 14 217 24 HOH HOH . 
H 5 HOH B 15 218 27 HOH HOH . 
H 5 HOH B 16 219 30 HOH HOH . 
H 5 HOH B 17 220 32 HOH HOH . 
H 5 HOH B 18 221 34 HOH HOH . 
H 5 HOH B 19 222 35 HOH HOH . 
H 5 HOH B 20 223 36 HOH HOH . 
H 5 HOH B 21 224 37 HOH HOH . 
H 5 HOH B 22 225 39 HOH HOH . 
H 5 HOH B 23 226 41 HOH HOH . 
H 5 HOH B 24 227 44 HOH HOH . 
H 5 HOH B 25 228 46 HOH HOH . 
H 5 HOH B 26 229 49 HOH HOH . 
H 5 HOH B 27 230 51 HOH HOH . 
H 5 HOH B 28 231 53 HOH HOH . 
H 5 HOH B 29 232 54 HOH HOH . 
H 5 HOH B 30 233 55 HOH HOH . 
H 5 HOH B 31 234 56 HOH HOH . 
H 5 HOH B 32 235 57 HOH HOH . 
H 5 HOH B 33 236 58 HOH HOH . 
H 5 HOH B 34 237 59 HOH HOH . 
H 5 HOH B 35 238 61 HOH HOH . 
H 5 HOH B 36 239 62 HOH HOH . 
H 5 HOH B 37 240 65 HOH HOH . 
H 5 HOH B 38 241 69 HOH HOH . 
H 5 HOH B 39 242 71 HOH HOH . 
H 5 HOH B 40 243 72 HOH HOH . 
H 5 HOH B 41 244 73 HOH HOH . 
H 5 HOH B 42 245 76 HOH HOH . 
H 5 HOH B 43 246 77 HOH HOH . 
H 5 HOH B 44 247 78 HOH HOH . 
H 5 HOH B 45 248 79 HOH HOH . 
H 5 HOH B 46 249 80 HOH HOH . 
H 5 HOH B 47 250 81 HOH HOH . 
H 5 HOH B 48 251 86 HOH HOH . 
H 5 HOH B 49 252 87 HOH HOH . 
H 5 HOH B 50 253 88 HOH HOH . 
H 5 HOH B 51 254 94 HOH HOH . 
H 5 HOH B 52 255 97 HOH HOH . 
H 5 HOH B 53 256 99 HOH HOH . 
H 5 HOH B 54 257 100 HOH HOH . 
H 5 HOH B 55 258 101 HOH HOH . 
H 5 HOH B 56 259 102 HOH HOH . 
H 5 HOH B 57 260 103 HOH HOH . 
H 5 HOH B 58 261 107 HOH HOH . 
H 5 HOH B 59 262 109 HOH HOH . 
H 5 HOH B 60 263 110 HOH HOH . 
H 5 HOH B 61 264 111 HOH HOH . 
H 5 HOH B 62 265 113 HOH HOH . 
H 5 HOH B 63 266 114 HOH HOH . 
H 5 HOH B 64 267 115 HOH HOH . 
H 5 HOH B 65 268 118 HOH HOH . 
H 5 HOH B 66 269 121 HOH HOH . 
H 5 HOH B 67 270 124 HOH HOH . 
H 5 HOH B 68 271 127 HOH HOH . 
H 5 HOH B 69 272 128 HOH HOH . 
H 5 HOH B 70 273 129 HOH HOH . 
H 5 HOH B 71 274 130 HOH HOH . 
H 5 HOH B 72 275 133 HOH HOH . 
H 5 HOH B 73 276 134 HOH HOH . 
H 5 HOH B 74 277 136 HOH HOH . 
H 5 HOH B 75 278 141 HOH HOH . 
H 5 HOH B 76 279 144 HOH HOH . 
H 5 HOH B 77 280 146 HOH HOH . 
H 5 HOH B 78 281 148 HOH HOH . 
H 5 HOH B 79 282 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 HP6 . . . D 3 -14.198 31.268 -7.11 1 58.28 ? C20 HP6 204 A 1 
HETATM 2 C C21 HP6 . . . D 3 -13.891 31.281 -5.612 1 58.33 ? C21 HP6 204 A 1 
HETATM 3 C C22 HP6 . . . D 3 -12.391 31.123 -5.355 1 57.94 ? C22 HP6 204 A 1 
HETATM 4 C C23 HP6 . . . D 3 -12.088 31.172 -3.856 1 59.46 ? C23 HP6 204 A 1 
HETATM 5 C C24 HP6 . . . D 3 -10.583 31.077 -3.599 1 59.89 ? C24 HP6 204 A 1 
HETATM 6 C C25 HP6 . . . D 3 -10.269 31.169 -2.105 1 60.24 ? C25 HP6 204 A 1 
HETATM 7 C C26 HP6 . . . D 3 -8.764 31.049 -1.858 1 61.87 ? C26 HP6 204 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           397 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           7 
#