data_2B5V # _model_server_result.job_id 8LjqRe8NuMD7YOEBA7axLA _model_server_result.datetime_utc '2024-11-08 13:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2B5V # _exptl.entry_id 2B5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B5V _cell.length_a 61.791 _cell.length_b 110.225 _cell.length_c 152.332 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 61.791 0 152.332 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 2B5V _atom_sites.fract_transf_matrix[1][1] 0.016184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 501 501 NAP NAP . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 2 HOH HOH . C 3 HOH A 3 504 3 HOH HOH . C 3 HOH A 4 505 4 HOH HOH . C 3 HOH A 5 506 5 HOH HOH . C 3 HOH A 6 507 6 HOH HOH . C 3 HOH A 7 508 7 HOH HOH . C 3 HOH A 8 509 8 HOH HOH . C 3 HOH A 9 510 9 HOH HOH . C 3 HOH A 10 511 10 HOH HOH . C 3 HOH A 11 512 11 HOH HOH . C 3 HOH A 12 513 12 HOH HOH . C 3 HOH A 13 514 13 HOH HOH . C 3 HOH A 14 515 14 HOH HOH . C 3 HOH A 15 516 15 HOH HOH . C 3 HOH A 16 517 16 HOH HOH . C 3 HOH A 17 518 17 HOH HOH . C 3 HOH A 18 519 18 HOH HOH . C 3 HOH A 19 520 19 HOH HOH . C 3 HOH A 20 521 20 HOH HOH . C 3 HOH A 21 522 21 HOH HOH . C 3 HOH A 22 523 22 HOH HOH . C 3 HOH A 23 524 23 HOH HOH . C 3 HOH A 24 525 24 HOH HOH . C 3 HOH A 25 526 25 HOH HOH . C 3 HOH A 26 527 26 HOH HOH . C 3 HOH A 27 528 27 HOH HOH . C 3 HOH A 28 529 28 HOH HOH . C 3 HOH A 29 530 29 HOH HOH . C 3 HOH A 30 531 30 HOH HOH . C 3 HOH A 31 532 31 HOH HOH . C 3 HOH A 32 533 32 HOH HOH . C 3 HOH A 33 534 33 HOH HOH . C 3 HOH A 34 535 34 HOH HOH . C 3 HOH A 35 536 35 HOH HOH . C 3 HOH A 36 537 36 HOH HOH . C 3 HOH A 37 538 37 HOH HOH . C 3 HOH A 38 539 38 HOH HOH . C 3 HOH A 39 540 39 HOH HOH . C 3 HOH A 40 541 40 HOH HOH . C 3 HOH A 41 542 41 HOH HOH . C 3 HOH A 42 543 42 HOH HOH . C 3 HOH A 43 544 43 HOH HOH . C 3 HOH A 44 545 44 HOH HOH . C 3 HOH A 45 546 45 HOH HOH . C 3 HOH A 46 547 46 HOH HOH . C 3 HOH A 47 548 47 HOH HOH . C 3 HOH A 48 549 48 HOH HOH . C 3 HOH A 49 550 49 HOH HOH . C 3 HOH A 50 551 50 HOH HOH . C 3 HOH A 51 552 51 HOH HOH . C 3 HOH A 52 553 52 HOH HOH . C 3 HOH A 53 554 53 HOH HOH . C 3 HOH A 54 555 54 HOH HOH . C 3 HOH A 55 556 55 HOH HOH . C 3 HOH A 56 557 56 HOH HOH . C 3 HOH A 57 558 57 HOH HOH . C 3 HOH A 58 559 58 HOH HOH . C 3 HOH A 59 560 59 HOH HOH . C 3 HOH A 60 561 60 HOH HOH . C 3 HOH A 61 562 61 HOH HOH . C 3 HOH A 62 563 62 HOH HOH . C 3 HOH A 63 564 63 HOH HOH . C 3 HOH A 64 565 64 HOH HOH . C 3 HOH A 65 566 65 HOH HOH . C 3 HOH A 66 567 66 HOH HOH . C 3 HOH A 67 568 67 HOH HOH . C 3 HOH A 68 569 68 HOH HOH . C 3 HOH A 69 570 69 HOH HOH . C 3 HOH A 70 571 70 HOH HOH . C 3 HOH A 71 572 71 HOH HOH . C 3 HOH A 72 573 72 HOH HOH . C 3 HOH A 73 574 73 HOH HOH . C 3 HOH A 74 575 74 HOH HOH . C 3 HOH A 75 576 75 HOH HOH . C 3 HOH A 76 577 76 HOH HOH . C 3 HOH A 77 578 77 HOH HOH . C 3 HOH A 78 579 78 HOH HOH . C 3 HOH A 79 580 79 HOH HOH . C 3 HOH A 80 581 80 HOH HOH . C 3 HOH A 81 582 81 HOH HOH . C 3 HOH A 82 583 82 HOH HOH . C 3 HOH A 83 584 83 HOH HOH . C 3 HOH A 84 585 84 HOH HOH . C 3 HOH A 85 586 85 HOH HOH . C 3 HOH A 86 587 86 HOH HOH . C 3 HOH A 87 588 87 HOH HOH . C 3 HOH A 88 589 88 HOH HOH . C 3 HOH A 89 590 89 HOH HOH . C 3 HOH A 90 591 90 HOH HOH . C 3 HOH A 91 592 91 HOH HOH . C 3 HOH A 92 593 92 HOH HOH . C 3 HOH A 93 594 93 HOH HOH . C 3 HOH A 94 595 94 HOH HOH . C 3 HOH A 95 596 95 HOH HOH . C 3 HOH A 96 597 96 HOH HOH . C 3 HOH A 97 598 97 HOH HOH . C 3 HOH A 98 599 98 HOH HOH . C 3 HOH A 99 600 99 HOH HOH . C 3 HOH A 100 601 100 HOH HOH . C 3 HOH A 101 602 101 HOH HOH . C 3 HOH A 102 603 102 HOH HOH . C 3 HOH A 103 604 103 HOH HOH . C 3 HOH A 104 605 104 HOH HOH . C 3 HOH A 105 606 105 HOH HOH . C 3 HOH A 106 607 106 HOH HOH . C 3 HOH A 107 608 107 HOH HOH . C 3 HOH A 108 609 108 HOH HOH . C 3 HOH A 109 610 109 HOH HOH . C 3 HOH A 110 611 110 HOH HOH . C 3 HOH A 111 612 111 HOH HOH . C 3 HOH A 112 613 112 HOH HOH . C 3 HOH A 113 614 113 HOH HOH . C 3 HOH A 114 615 114 HOH HOH . C 3 HOH A 115 616 115 HOH HOH . C 3 HOH A 116 617 116 HOH HOH . C 3 HOH A 117 618 117 HOH HOH . C 3 HOH A 118 619 118 HOH HOH . C 3 HOH A 119 620 119 HOH HOH . C 3 HOH A 120 621 120 HOH HOH . C 3 HOH A 121 622 121 HOH HOH . C 3 HOH A 122 623 122 HOH HOH . C 3 HOH A 123 624 123 HOH HOH . C 3 HOH A 124 625 124 HOH HOH . C 3 HOH A 125 626 125 HOH HOH . C 3 HOH A 126 627 126 HOH HOH . C 3 HOH A 127 628 127 HOH HOH . C 3 HOH A 128 629 128 HOH HOH . C 3 HOH A 129 630 129 HOH HOH . C 3 HOH A 130 631 130 HOH HOH . C 3 HOH A 131 632 131 HOH HOH . C 3 HOH A 132 633 132 HOH HOH . C 3 HOH A 133 634 133 HOH HOH . C 3 HOH A 134 635 134 HOH HOH . C 3 HOH A 135 636 135 HOH HOH . C 3 HOH A 136 637 136 HOH HOH . C 3 HOH A 137 638 137 HOH HOH . C 3 HOH A 138 639 138 HOH HOH . C 3 HOH A 139 640 139 HOH HOH . C 3 HOH A 140 641 140 HOH HOH . C 3 HOH A 141 642 141 HOH HOH . C 3 HOH A 142 643 142 HOH HOH . C 3 HOH A 143 644 143 HOH HOH . C 3 HOH A 144 645 144 HOH HOH . C 3 HOH A 145 646 145 HOH HOH . C 3 HOH A 146 647 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 31.296 27.262 54.094 1 37.25 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . B 2 31.853 28.52 54.402 1 48.19 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . B 2 31.21 26.595 52.74 1 30.5 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . B 2 29.815 27.225 54.615 1 44.65 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . B 2 29.475 27.884 55.866 1 33.8 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . B 2 28.021 28.25 55.554 1 33.08 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . B 2 27.412 28.871 56.744 1 34.98 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . B 2 27.786 29.311 54.406 1 31.49 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . B 2 26.829 28.752 53.539 1 33.6 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . B 2 27.309 30.574 55.139 1 35.47 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . B 2 26.302 31.319 54.467 1 42.26 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . B 2 26.727 30.029 56.454 1 29.69 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . B 2 26.767 31.026 57.49 1 28.11 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . B 2 27.795 31.749 58.05 1 24.63 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . B 2 27.402 32.589 58.986 1 25.2 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . B 2 26.033 32.407 59.035 1 21.84 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . B 2 25.074 33.031 59.829 1 24.26 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . B 2 25.28 33.998 60.753 1 31.46 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . B 2 23.751 32.629 59.654 1 24.42 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . B 2 23.42 31.641 58.728 1 21.5 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . B 2 24.363 31.017 57.927 1 28.16 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . B 2 25.642 31.429 58.119 1 26.21 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . B 2 31.987 26.131 54.965 1 43.08 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . B 2 31.892 24.532 54.812 1 37.4 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . B 2 30.506 23.996 54.989 1 33.62 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . B 2 32.869 23.746 54.074 1 52.23 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . B 2 32.51 24.828 56.284 1 38.42 ? O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . B 2 31.672 25.135 57.474 1 29.61 ? C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . B 2 32.605 25.428 58.662 1 36.15 ? C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . B 2 33.233 24.179 59.094 1 35.25 ? O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . B 2 33.834 26.414 58.424 1 28.49 ? C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . B 2 34.06 27.297 59.545 1 29.76 ? O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . B 2 34.998 25.472 58.229 1 33.18 ? C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . B 2 36.216 26.087 58.582 1 36.35 ? O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . B 2 34.658 24.393 59.174 1 27.48 ? C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . B 2 35.236 23.056 58.986 1 31.33 ? N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . B 2 35.746 22.358 60.087 1 26.7 ? C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . B 2 36.28 21.117 59.902 1 29.26 ? C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . B 2 36.82 20.375 61.134 1 32.56 ? C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . B 2 37.332 19.298 60.929 1 23.7 ? O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . B 2 36.732 20.9 62.335 1 22.78 ? N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . B 2 36.344 20.506 58.568 1 33.5 ? C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . B 2 35.807 21.241 57.478 1 33.22 ? C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . B 2 35.24 22.53 57.665 1 26.64 ? C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . B 2 26.591 32.457 53.328 1 32.56 ? P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . B 2 27.209 31.715 52.155 1 35.44 ? O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . B 2 25.202 32.938 53.088 1 36.33 ? O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . B 2 27.542 33.454 53.956 1 38.33 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #