data_2B5Z # _model_server_result.job_id zphwL9DyX2C4EE4q3WlrgQ _model_server_result.datetime_utc '2024-10-12 15:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":175}' # _entry.id 2B5Z # _exptl.entry_id 2B5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B5Z _cell.length_a 30.58 _cell.length_b 32.97 _cell.length_c 120.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NE2 HIS 15 A HIS 15 1_555 D CS BGS . A BGS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale2 A NZ LYS 96 A LYS 96 1_555 B CS BGS . A BGS 961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale3 A NZ LYS 96 A LYS 96 1_555 E CS BGS . A BGS 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A NZ LYS 97 A LYS 97 1_555 C CS BGS . A BGS 971 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 2B5Z _atom_sites.fract_transf_matrix[1][1] 0.032701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGS A 1 961 961 BGS BGS . C 2 BGS A 1 971 971 BGS BGS . D 2 BGS A 1 151 151 BGS BGS . E 2 BGS A 1 962 962 BGS BGS . F 3 AZI A 1 972 101 AZI AZI . G 3 AZI A 1 973 102 AZI AZI . H 3 AZI A 1 974 103 AZI AZI . I 4 GOL A 1 175 175 GOL GOL . J 5 HOH A 1 975 1 HOH HOH . J 5 HOH A 2 976 2 HOH HOH . J 5 HOH A 3 977 3 HOH HOH . J 5 HOH A 4 978 4 HOH HOH . J 5 HOH A 5 979 5 HOH HOH . J 5 HOH A 6 980 6 HOH HOH . J 5 HOH A 7 981 7 HOH HOH . J 5 HOH A 8 982 8 HOH HOH . J 5 HOH A 9 983 9 HOH HOH . J 5 HOH A 10 984 10 HOH HOH . J 5 HOH A 11 985 11 HOH HOH . J 5 HOH A 12 986 12 HOH HOH . J 5 HOH A 13 987 13 HOH HOH . J 5 HOH A 14 988 14 HOH HOH . J 5 HOH A 15 989 15 HOH HOH . J 5 HOH A 16 990 16 HOH HOH . J 5 HOH A 17 991 17 HOH HOH . J 5 HOH A 18 992 18 HOH HOH . J 5 HOH A 19 993 19 HOH HOH . J 5 HOH A 20 994 20 HOH HOH . J 5 HOH A 21 995 21 HOH HOH . J 5 HOH A 22 996 22 HOH HOH . J 5 HOH A 23 997 23 HOH HOH . J 5 HOH A 24 998 24 HOH HOH . J 5 HOH A 25 999 25 HOH HOH . J 5 HOH A 26 1000 26 HOH HOH . J 5 HOH A 27 1001 27 HOH HOH . J 5 HOH A 28 1002 28 HOH HOH . J 5 HOH A 29 1003 29 HOH HOH . J 5 HOH A 30 1004 30 HOH HOH . J 5 HOH A 31 1005 31 HOH HOH . J 5 HOH A 32 1006 32 HOH HOH . J 5 HOH A 33 1007 33 HOH HOH . J 5 HOH A 34 1008 34 HOH HOH . J 5 HOH A 35 1009 35 HOH HOH . J 5 HOH A 36 1010 36 HOH HOH . J 5 HOH A 37 1011 37 HOH HOH . J 5 HOH A 38 1012 38 HOH HOH . J 5 HOH A 39 1013 39 HOH HOH . J 5 HOH A 40 1014 40 HOH HOH . J 5 HOH A 41 1015 41 HOH HOH . J 5 HOH A 42 1016 42 HOH HOH . J 5 HOH A 43 1017 43 HOH HOH . J 5 HOH A 44 1018 44 HOH HOH . J 5 HOH A 45 1019 45 HOH HOH . J 5 HOH A 46 1020 46 HOH HOH . J 5 HOH A 47 1021 47 HOH HOH . J 5 HOH A 48 1022 48 HOH HOH . J 5 HOH A 49 1023 49 HOH HOH . J 5 HOH A 50 1024 50 HOH HOH . J 5 HOH A 51 1025 51 HOH HOH . J 5 HOH A 52 1026 52 HOH HOH . J 5 HOH A 53 1027 53 HOH HOH . J 5 HOH A 54 1028 54 HOH HOH . J 5 HOH A 55 1029 55 HOH HOH . J 5 HOH A 56 1030 56 HOH HOH . J 5 HOH A 57 1031 57 HOH HOH . J 5 HOH A 58 1032 58 HOH HOH . J 5 HOH A 59 1033 59 HOH HOH . J 5 HOH A 60 1034 60 HOH HOH . J 5 HOH A 61 1035 61 HOH HOH . J 5 HOH A 62 1036 62 HOH HOH . J 5 HOH A 63 1037 63 HOH HOH . J 5 HOH A 64 1038 64 HOH HOH . J 5 HOH A 65 1039 65 HOH HOH . J 5 HOH A 66 1040 66 HOH HOH . J 5 HOH A 67 1041 67 HOH HOH . J 5 HOH A 68 1042 68 HOH HOH . J 5 HOH A 69 1043 69 HOH HOH . J 5 HOH A 70 1044 70 HOH HOH . J 5 HOH A 71 1045 71 HOH HOH . J 5 HOH A 72 1046 72 HOH HOH . J 5 HOH A 73 1047 73 HOH HOH . J 5 HOH A 74 1048 74 HOH HOH . J 5 HOH A 75 1049 75 HOH HOH . J 5 HOH A 76 1050 76 HOH HOH . J 5 HOH A 77 1051 77 HOH HOH . J 5 HOH A 78 1052 78 HOH HOH . J 5 HOH A 79 1053 79 HOH HOH . J 5 HOH A 80 1054 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -7.356 25.435 48.169 1 27.56 ? C1 GOL 175 A 1 HETATM 2 O O1 GOL . . . I 4 -6.031 26.171 47.669 1 21.94 ? O1 GOL 175 A 1 HETATM 3 C C2 GOL . . . I 4 -7.507 24.068 48.325 1 23.65 ? C2 GOL 175 A 1 HETATM 4 O O2 GOL . . . I 4 -7.225 23.417 47.19 1 32.75 ? O2 GOL 175 A 1 HETATM 5 C C3 GOL . . . I 4 -7.874 23.822 49.443 1 27.56 ? C3 GOL 175 A 1 HETATM 6 O O3 GOL . . . I 4 -8.323 23.993 50.923 1 20.83 ? O3 GOL 175 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #