data_2B6O # _model_server_result.job_id NKfzRIHPGTu8tzOy78E90w _model_server_result.datetime_utc '2024-11-04 22:38:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":268}' # _entry.id 2B6O # _exptl.entry_id 2B6O _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 677.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B6O _cell.length_a 65.5 _cell.length_b 65.5 _cell.length_c 160 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.5 65.5 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 65.5 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 65.5 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 65.5 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 65.5 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 65.5 65.5 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 218 n n C1 O3P MC3 sing 219 n n C1 H11 MC3 sing 220 n n C1 H12 MC3 sing 221 n n C2 C3 MC3 sing 222 n n C2 O2 MC3 sing 223 n n C2 H2 MC3 sing 224 n n C3 O3 MC3 sing 225 n n C3 H31 MC3 sing 226 n n C3 H32 MC3 sing 227 n n C4 C5 MC3 sing 228 n n C4 O4P MC3 sing 229 n n C4 H41 MC3 sing 230 n n C4 H42 MC3 sing 231 n n C5 N MC3 sing 232 n n C5 H51 MC3 sing 233 n n C5 H52 MC3 sing 234 n n C6 N MC3 sing 235 n n C6 H61 MC3 sing 236 n n C6 H62 MC3 sing 237 n n C6 H63 MC3 sing 238 n n C7 N MC3 sing 239 n n C7 H71 MC3 sing 240 n n C7 H72 MC3 sing 241 n n C7 H73 MC3 sing 242 n n C8 N MC3 sing 243 n n C8 H81 MC3 sing 244 n n C8 H82 MC3 sing 245 n n C8 H83 MC3 sing 246 n n C11 C12 MC3 sing 247 n n C11 O3 MC3 sing 248 n n C11 O11 MC3 doub 249 n n C12 C13 MC3 sing 250 n n C12 H121 MC3 sing 251 n n C12 H122 MC3 sing 252 n n C13 C14 MC3 sing 253 n n C13 H131 MC3 sing 254 n n C13 H132 MC3 sing 255 n n C14 C15 MC3 sing 256 n n C14 H141 MC3 sing 257 n n C14 H142 MC3 sing 258 n n C15 C16 MC3 sing 259 n n C15 H151 MC3 sing 260 n n C15 H152 MC3 sing 261 n n C16 C17 MC3 sing 262 n n C16 H161 MC3 sing 263 n n C16 H162 MC3 sing 264 n n C17 C18 MC3 sing 265 n n C17 H171 MC3 sing 266 n n C17 H172 MC3 sing 267 n n C18 C19 MC3 sing 268 n n C18 H181 MC3 sing 269 n n C18 H182 MC3 sing 270 n n C19 C20 MC3 sing 271 n n C19 H191 MC3 sing 272 n n C19 H192 MC3 sing 273 n n C20 C21 MC3 sing 274 n n C20 H201 MC3 sing 275 n n C20 H202 MC3 sing 276 n n C21 C22 MC3 sing 277 n n C21 H211 MC3 sing 278 n n C21 H212 MC3 sing 279 n n C22 C23 MC3 sing 280 n n C22 H221 MC3 sing 281 n n C22 H222 MC3 sing 282 n n C23 C24 MC3 sing 283 n n C23 H231 MC3 sing 284 n n C23 H232 MC3 sing 285 n n C24 H241 MC3 sing 286 n n C24 H242 MC3 sing 287 n n C24 H243 MC3 sing 288 n n C31 C32 MC3 sing 289 n n C31 O2 MC3 sing 290 n n C31 O31 MC3 doub 291 n n C32 C33 MC3 sing 292 n n C32 H321 MC3 sing 293 n n C32 H322 MC3 sing 294 n n C33 C34 MC3 sing 295 n n C33 H331 MC3 sing 296 n n C33 H332 MC3 sing 297 n n C34 C35 MC3 sing 298 n n C34 H341 MC3 sing 299 n n C34 H342 MC3 sing 300 n n C35 C36 MC3 sing 301 n n C35 H351 MC3 sing 302 n n C35 H352 MC3 sing 303 n n C36 C37 MC3 sing 304 n n C36 H361 MC3 sing 305 n n C36 H362 MC3 sing 306 n n C37 C38 MC3 sing 307 n n C37 H371 MC3 sing 308 n n C37 H372 MC3 sing 309 n n C38 C39 MC3 sing 310 n n C38 H381 MC3 sing 311 n n C38 H382 MC3 sing 312 n n C39 C40 MC3 sing 313 n n C39 H391 MC3 sing 314 n n C39 H392 MC3 sing 315 n n C40 C41 MC3 sing 316 n n C40 H401 MC3 sing 317 n n C40 H402 MC3 sing 318 n n C41 C42 MC3 sing 319 n n C41 H411 MC3 sing 320 n n C41 H412 MC3 sing 321 n n C42 C43 MC3 sing 322 n n C42 H421 MC3 sing 323 n n C42 H422 MC3 sing 324 n n C43 C44 MC3 sing 325 n n C43 H431 MC3 sing 326 n n C43 H432 MC3 sing 327 n n C44 H441 MC3 sing 328 n n C44 H442 MC3 sing 329 n n C44 H443 MC3 sing 330 n n O1P P MC3 doub 331 n n O2P P MC3 sing 332 n n O3P P MC3 sing 333 n n O4P P MC3 sing 334 n n # _atom_sites.entry_id 2B6O _atom_sites.fract_transf_matrix[1][1] 0.015267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC3 A 1 264 92 MC3 MC3 . C 2 MC3 A 1 265 93 MC3 MC3 . D 2 MC3 A 1 266 94 MC3 MC3 . E 2 MC3 A 1 267 95 MC3 MC3 . F 2 MC3 A 1 268 96 MC3 MC3 . G 2 MC3 A 1 269 97 MC3 MC3 . H 2 MC3 A 1 270 91 MC3 MC3 . I 2 MC3 A 1 271 98 MC3 MC3 . J 2 MC3 A 1 272 99 MC3 MC3 . K 3 HOH A 1 273 1 HOH HOH . K 3 HOH A 2 274 2 HOH HOH . K 3 HOH A 3 275 3 HOH HOH . K 3 HOH A 4 276 4 HOH HOH . K 3 HOH A 5 277 5 HOH HOH . K 3 HOH A 6 278 6 HOH HOH . K 3 HOH A 7 279 7 HOH HOH . K 3 HOH A 8 280 8 HOH HOH . K 3 HOH A 9 281 9 HOH HOH . K 3 HOH A 10 282 10 HOH HOH . K 3 HOH A 11 283 11 HOH HOH . K 3 HOH A 12 284 12 HOH HOH . K 3 HOH A 13 285 13 HOH HOH . K 3 HOH A 14 286 14 HOH HOH . K 3 HOH A 15 287 15 HOH HOH . K 3 HOH A 16 288 16 HOH HOH . K 3 HOH A 17 289 17 HOH HOH . K 3 HOH A 18 290 18 HOH HOH . K 3 HOH A 19 291 19 HOH HOH . K 3 HOH A 20 292 20 HOH HOH . K 3 HOH A 21 293 21 HOH HOH . K 3 HOH A 22 294 22 HOH HOH . K 3 HOH A 23 295 23 HOH HOH . K 3 HOH A 24 296 24 HOH HOH . K 3 HOH A 25 297 25 HOH HOH . K 3 HOH A 26 298 26 HOH HOH . K 3 HOH A 27 299 27 HOH HOH . K 3 HOH A 28 300 28 HOH HOH . K 3 HOH A 29 301 29 HOH HOH . K 3 HOH A 30 302 30 HOH HOH . K 3 HOH A 31 303 31 HOH HOH . K 3 HOH A 32 304 32 HOH HOH . K 3 HOH A 33 305 33 HOH HOH . K 3 HOH A 34 306 34 HOH HOH . K 3 HOH A 35 307 35 HOH HOH . K 3 HOH A 36 308 36 HOH HOH . K 3 HOH A 37 309 37 HOH HOH . K 3 HOH A 38 310 38 HOH HOH . K 3 HOH A 39 311 39 HOH HOH . K 3 HOH A 40 312 40 HOH HOH . K 3 HOH A 41 313 41 HOH HOH . K 3 HOH A 42 314 42 HOH HOH . K 3 HOH A 43 315 43 HOH HOH . K 3 HOH A 44 316 44 HOH HOH . K 3 HOH A 45 317 45 HOH HOH . K 3 HOH A 46 318 46 HOH HOH . K 3 HOH A 47 319 47 HOH HOH . K 3 HOH A 48 320 48 HOH HOH . K 3 HOH A 49 321 49 HOH HOH . K 3 HOH A 50 322 50 HOH HOH . K 3 HOH A 51 323 51 HOH HOH . K 3 HOH A 52 324 52 HOH HOH . K 3 HOH A 53 325 53 HOH HOH . K 3 HOH A 54 326 54 HOH HOH . K 3 HOH A 55 327 55 HOH HOH . K 3 HOH A 56 328 56 HOH HOH . K 3 HOH A 57 329 57 HOH HOH . K 3 HOH A 58 330 58 HOH HOH . K 3 HOH A 59 331 59 HOH HOH . K 3 HOH A 60 332 61 HOH HOH . K 3 HOH A 61 333 62 HOH HOH . K 3 HOH A 62 334 63 HOH HOH . K 3 HOH A 63 335 64 HOH HOH . K 3 HOH A 64 336 65 HOH HOH . K 3 HOH A 65 337 66 HOH HOH . K 3 HOH A 66 338 67 HOH HOH . K 3 HOH A 67 339 68 HOH HOH . K 3 HOH A 68 340 69 HOH HOH . K 3 HOH A 69 341 70 HOH HOH . K 3 HOH A 70 342 71 HOH HOH . K 3 HOH A 71 343 72 HOH HOH . K 3 HOH A 72 344 73 HOH HOH . K 3 HOH A 73 345 74 HOH HOH . K 3 HOH A 74 346 75 HOH HOH . K 3 HOH A 75 347 76 HOH HOH . K 3 HOH A 76 348 77 HOH HOH . K 3 HOH A 77 349 78 HOH HOH . K 3 HOH A 78 350 79 HOH HOH . K 3 HOH A 79 351 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . F 2 59.551 30.681 37.768 1 116.41 ? C1 MC3 268 A 1 HETATM 2 C C2 MC3 . . . F 2 59.981 32.17 37.859 1 115.95 ? C2 MC3 268 A 1 HETATM 3 C C3 MC3 . . . F 2 60.48 32.734 36.5 1 116.28 ? C3 MC3 268 A 1 HETATM 4 C C4 MC3 . . . F 2 62.231 30.863 40.477 1 121.34 ? C4 MC3 268 A 1 HETATM 5 C C5 MC3 . . . F 2 63.246 30.442 41.562 1 123.07 ? C5 MC3 268 A 1 HETATM 6 C C6 MC3 . . . F 2 63.28 32.608 42.732 1 123.94 ? C6 MC3 268 A 1 HETATM 7 C C7 MC3 . . . F 2 64.125 30.643 43.811 1 124.23 ? C7 MC3 268 A 1 HETATM 8 C C8 MC3 . . . F 2 61.766 30.887 43.47 1 123.12 ? C8 MC3 268 A 1 HETATM 9 C C11 MC3 . . . F 2 60.895 32.128 34.097 1 116.49 ? C11 MC3 268 A 1 HETATM 10 C C12 MC3 . . . F 2 61.402 33.577 33.902 1 116.13 ? C12 MC3 268 A 1 HETATM 11 C C13 MC3 . . . F 2 62.927 33.758 33.949 1 115.71 ? C13 MC3 268 A 1 HETATM 12 C C14 MC3 . . . F 2 63.589 33.571 32.588 1 115.64 ? C14 MC3 268 A 1 HETATM 13 C C15 MC3 . . . F 2 63.771 34.878 31.865 1 115.46 ? C15 MC3 268 A 1 HETATM 14 C C16 MC3 . . . F 2 63.035 34.875 30.543 1 115.94 ? C16 MC3 268 A 1 HETATM 15 C C17 MC3 . . . F 2 63.213 36.2 29.811 1 116.86 ? C17 MC3 268 A 1 HETATM 16 C C18 MC3 . . . F 2 64.28 36.126 28.717 1 116.54 ? C18 MC3 268 A 1 HETATM 17 C C19 MC3 . . . F 2 63.693 35.718 27.371 1 116.36 ? C19 MC3 268 A 1 HETATM 18 C C20 MC3 . . . F 2 64.743 35.057 26.506 1 116.68 ? C20 MC3 268 A 1 HETATM 19 C C21 MC3 . . . F 2 64.541 35.389 25.043 1 116.65 ? C21 MC3 268 A 1 HETATM 20 C C22 MC3 . . . F 2 65.572 36.383 24.564 1 115.79 ? C22 MC3 268 A 1 HETATM 21 C C23 MC3 . . . F 2 64.919 37.651 24.054 1 115.04 ? C23 MC3 268 A 1 HETATM 22 C C24 MC3 . . . F 2 65.96 38.644 23.572 1 115.11 ? C24 MC3 268 A 1 HETATM 23 C C31 MC3 . . . F 2 57.43 33.121 37.837 1 112.63 ? C31 MC3 268 A 1 HETATM 24 C C32 MC3 . . . F 2 57.076 32.449 36.485 1 111.61 ? C32 MC3 268 A 1 HETATM 25 C C33 MC3 . . . F 2 56.721 33.382 35.308 1 110 ? C33 MC3 268 A 1 HETATM 26 C C34 MC3 . . . F 2 55.489 34.268 35.528 1 107.51 ? C34 MC3 268 A 1 HETATM 27 C C35 MC3 . . . F 2 54.997 34.868 34.209 1 104.96 ? C35 MC3 268 A 1 HETATM 28 C C36 MC3 . . . F 2 53.676 34.256 33.73 1 101.81 ? C36 MC3 268 A 1 HETATM 29 C C37 MC3 . . . F 2 53.537 34.364 32.215 1 98.72 ? C37 MC3 268 A 1 HETATM 30 C C38 MC3 . . . F 2 52.233 33.775 31.731 1 95.64 ? C38 MC3 268 A 1 HETATM 31 C C39 MC3 . . . F 2 52.433 32.972 30.468 1 92.88 ? C39 MC3 268 A 1 HETATM 32 C C40 MC3 . . . F 2 51.289 31.994 30.237 1 89.67 ? C40 MC3 268 A 1 HETATM 33 C C41 MC3 . . . F 2 51.769 30.549 30.2 1 86.91 ? C41 MC3 268 A 1 HETATM 34 C C42 MC3 . . . F 2 52.177 30.116 28.802 1 84.86 ? C42 MC3 268 A 1 HETATM 35 C C43 MC3 . . . F 2 53.546 29.457 28.811 1 82.36 ? C43 MC3 268 A 1 HETATM 36 C C44 MC3 . . . F 2 54.579 30.318 28.095 1 81.6 ? C44 MC3 268 A 1 HETATM 37 N N MC3 . . . F 2 63.099 31.149 42.887 1 123.67 ? N MC3 268 A 1 HETATM 38 O O2 MC3 . . . F 2 58.825 32.955 38.454 1 114.12 ? O2 MC3 268 A 1 HETATM 39 O O3 MC3 . . . F 2 60.43 31.721 35.446 1 116.85 ? O3 MC3 268 A 1 HETATM 40 O O11 MC3 . . . F 2 60.877 31.312 33.154 1 116.61 ? O11 MC3 268 A 1 HETATM 41 O O31 MC3 . . . F 2 56.566 33.796 38.437 1 112.45 ? O31 MC3 268 A 1 HETATM 42 O O1P MC3 . . . F 2 61.39 27.898 39.496 1 118.61 ? O1P MC3 268 A 1 HETATM 43 O O2P MC3 . . . F 2 61.581 28.952 37.292 1 119.12 ? O2P MC3 268 A 1 HETATM 44 O O3P MC3 . . . F 2 59.946 29.922 38.965 1 118.26 ? O3P MC3 268 A 1 HETATM 45 O O4P MC3 . . . F 2 62.531 30.089 39.284 1 120 ? O4P MC3 268 A 1 HETATM 46 P P MC3 . . . F 2 61.343 29.243 38.78 1 119.02 ? P MC3 268 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #