data_2B6O # _model_server_result.job_id fepWyDiT90MRuRRuUkkX6w _model_server_result.datetime_utc '2024-11-04 22:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":272}' # _entry.id 2B6O # _exptl.entry_id 2B6O _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 677.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B6O _cell.length_a 65.5 _cell.length_b 65.5 _cell.length_c 160 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.5 65.5 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 65.5 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 65.5 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 65.5 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 65.5 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 65.5 65.5 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 218 n n C1 O3P MC3 sing 219 n n C1 H11 MC3 sing 220 n n C1 H12 MC3 sing 221 n n C2 C3 MC3 sing 222 n n C2 O2 MC3 sing 223 n n C2 H2 MC3 sing 224 n n C3 O3 MC3 sing 225 n n C3 H31 MC3 sing 226 n n C3 H32 MC3 sing 227 n n C4 C5 MC3 sing 228 n n C4 O4P MC3 sing 229 n n C4 H41 MC3 sing 230 n n C4 H42 MC3 sing 231 n n C5 N MC3 sing 232 n n C5 H51 MC3 sing 233 n n C5 H52 MC3 sing 234 n n C6 N MC3 sing 235 n n C6 H61 MC3 sing 236 n n C6 H62 MC3 sing 237 n n C6 H63 MC3 sing 238 n n C7 N MC3 sing 239 n n C7 H71 MC3 sing 240 n n C7 H72 MC3 sing 241 n n C7 H73 MC3 sing 242 n n C8 N MC3 sing 243 n n C8 H81 MC3 sing 244 n n C8 H82 MC3 sing 245 n n C8 H83 MC3 sing 246 n n C11 C12 MC3 sing 247 n n C11 O3 MC3 sing 248 n n C11 O11 MC3 doub 249 n n C12 C13 MC3 sing 250 n n C12 H121 MC3 sing 251 n n C12 H122 MC3 sing 252 n n C13 C14 MC3 sing 253 n n C13 H131 MC3 sing 254 n n C13 H132 MC3 sing 255 n n C14 C15 MC3 sing 256 n n C14 H141 MC3 sing 257 n n C14 H142 MC3 sing 258 n n C15 C16 MC3 sing 259 n n C15 H151 MC3 sing 260 n n C15 H152 MC3 sing 261 n n C16 C17 MC3 sing 262 n n C16 H161 MC3 sing 263 n n C16 H162 MC3 sing 264 n n C17 C18 MC3 sing 265 n n C17 H171 MC3 sing 266 n n C17 H172 MC3 sing 267 n n C18 C19 MC3 sing 268 n n C18 H181 MC3 sing 269 n n C18 H182 MC3 sing 270 n n C19 C20 MC3 sing 271 n n C19 H191 MC3 sing 272 n n C19 H192 MC3 sing 273 n n C20 C21 MC3 sing 274 n n C20 H201 MC3 sing 275 n n C20 H202 MC3 sing 276 n n C21 C22 MC3 sing 277 n n C21 H211 MC3 sing 278 n n C21 H212 MC3 sing 279 n n C22 C23 MC3 sing 280 n n C22 H221 MC3 sing 281 n n C22 H222 MC3 sing 282 n n C23 C24 MC3 sing 283 n n C23 H231 MC3 sing 284 n n C23 H232 MC3 sing 285 n n C24 H241 MC3 sing 286 n n C24 H242 MC3 sing 287 n n C24 H243 MC3 sing 288 n n C31 C32 MC3 sing 289 n n C31 O2 MC3 sing 290 n n C31 O31 MC3 doub 291 n n C32 C33 MC3 sing 292 n n C32 H321 MC3 sing 293 n n C32 H322 MC3 sing 294 n n C33 C34 MC3 sing 295 n n C33 H331 MC3 sing 296 n n C33 H332 MC3 sing 297 n n C34 C35 MC3 sing 298 n n C34 H341 MC3 sing 299 n n C34 H342 MC3 sing 300 n n C35 C36 MC3 sing 301 n n C35 H351 MC3 sing 302 n n C35 H352 MC3 sing 303 n n C36 C37 MC3 sing 304 n n C36 H361 MC3 sing 305 n n C36 H362 MC3 sing 306 n n C37 C38 MC3 sing 307 n n C37 H371 MC3 sing 308 n n C37 H372 MC3 sing 309 n n C38 C39 MC3 sing 310 n n C38 H381 MC3 sing 311 n n C38 H382 MC3 sing 312 n n C39 C40 MC3 sing 313 n n C39 H391 MC3 sing 314 n n C39 H392 MC3 sing 315 n n C40 C41 MC3 sing 316 n n C40 H401 MC3 sing 317 n n C40 H402 MC3 sing 318 n n C41 C42 MC3 sing 319 n n C41 H411 MC3 sing 320 n n C41 H412 MC3 sing 321 n n C42 C43 MC3 sing 322 n n C42 H421 MC3 sing 323 n n C42 H422 MC3 sing 324 n n C43 C44 MC3 sing 325 n n C43 H431 MC3 sing 326 n n C43 H432 MC3 sing 327 n n C44 H441 MC3 sing 328 n n C44 H442 MC3 sing 329 n n C44 H443 MC3 sing 330 n n O1P P MC3 doub 331 n n O2P P MC3 sing 332 n n O3P P MC3 sing 333 n n O4P P MC3 sing 334 n n # _atom_sites.entry_id 2B6O _atom_sites.fract_transf_matrix[1][1] 0.015267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC3 A 1 264 92 MC3 MC3 . C 2 MC3 A 1 265 93 MC3 MC3 . D 2 MC3 A 1 266 94 MC3 MC3 . E 2 MC3 A 1 267 95 MC3 MC3 . F 2 MC3 A 1 268 96 MC3 MC3 . G 2 MC3 A 1 269 97 MC3 MC3 . H 2 MC3 A 1 270 91 MC3 MC3 . I 2 MC3 A 1 271 98 MC3 MC3 . J 2 MC3 A 1 272 99 MC3 MC3 . K 3 HOH A 1 273 1 HOH HOH . K 3 HOH A 2 274 2 HOH HOH . K 3 HOH A 3 275 3 HOH HOH . K 3 HOH A 4 276 4 HOH HOH . K 3 HOH A 5 277 5 HOH HOH . K 3 HOH A 6 278 6 HOH HOH . K 3 HOH A 7 279 7 HOH HOH . K 3 HOH A 8 280 8 HOH HOH . K 3 HOH A 9 281 9 HOH HOH . K 3 HOH A 10 282 10 HOH HOH . K 3 HOH A 11 283 11 HOH HOH . K 3 HOH A 12 284 12 HOH HOH . K 3 HOH A 13 285 13 HOH HOH . K 3 HOH A 14 286 14 HOH HOH . K 3 HOH A 15 287 15 HOH HOH . K 3 HOH A 16 288 16 HOH HOH . K 3 HOH A 17 289 17 HOH HOH . K 3 HOH A 18 290 18 HOH HOH . K 3 HOH A 19 291 19 HOH HOH . K 3 HOH A 20 292 20 HOH HOH . K 3 HOH A 21 293 21 HOH HOH . K 3 HOH A 22 294 22 HOH HOH . K 3 HOH A 23 295 23 HOH HOH . K 3 HOH A 24 296 24 HOH HOH . K 3 HOH A 25 297 25 HOH HOH . K 3 HOH A 26 298 26 HOH HOH . K 3 HOH A 27 299 27 HOH HOH . K 3 HOH A 28 300 28 HOH HOH . K 3 HOH A 29 301 29 HOH HOH . K 3 HOH A 30 302 30 HOH HOH . K 3 HOH A 31 303 31 HOH HOH . K 3 HOH A 32 304 32 HOH HOH . K 3 HOH A 33 305 33 HOH HOH . K 3 HOH A 34 306 34 HOH HOH . K 3 HOH A 35 307 35 HOH HOH . K 3 HOH A 36 308 36 HOH HOH . K 3 HOH A 37 309 37 HOH HOH . K 3 HOH A 38 310 38 HOH HOH . K 3 HOH A 39 311 39 HOH HOH . K 3 HOH A 40 312 40 HOH HOH . K 3 HOH A 41 313 41 HOH HOH . K 3 HOH A 42 314 42 HOH HOH . K 3 HOH A 43 315 43 HOH HOH . K 3 HOH A 44 316 44 HOH HOH . K 3 HOH A 45 317 45 HOH HOH . K 3 HOH A 46 318 46 HOH HOH . K 3 HOH A 47 319 47 HOH HOH . K 3 HOH A 48 320 48 HOH HOH . K 3 HOH A 49 321 49 HOH HOH . K 3 HOH A 50 322 50 HOH HOH . K 3 HOH A 51 323 51 HOH HOH . K 3 HOH A 52 324 52 HOH HOH . K 3 HOH A 53 325 53 HOH HOH . K 3 HOH A 54 326 54 HOH HOH . K 3 HOH A 55 327 55 HOH HOH . K 3 HOH A 56 328 56 HOH HOH . K 3 HOH A 57 329 57 HOH HOH . K 3 HOH A 58 330 58 HOH HOH . K 3 HOH A 59 331 59 HOH HOH . K 3 HOH A 60 332 61 HOH HOH . K 3 HOH A 61 333 62 HOH HOH . K 3 HOH A 62 334 63 HOH HOH . K 3 HOH A 63 335 64 HOH HOH . K 3 HOH A 64 336 65 HOH HOH . K 3 HOH A 65 337 66 HOH HOH . K 3 HOH A 66 338 67 HOH HOH . K 3 HOH A 67 339 68 HOH HOH . K 3 HOH A 68 340 69 HOH HOH . K 3 HOH A 69 341 70 HOH HOH . K 3 HOH A 70 342 71 HOH HOH . K 3 HOH A 71 343 72 HOH HOH . K 3 HOH A 72 344 73 HOH HOH . K 3 HOH A 73 345 74 HOH HOH . K 3 HOH A 74 346 75 HOH HOH . K 3 HOH A 75 347 76 HOH HOH . K 3 HOH A 76 348 77 HOH HOH . K 3 HOH A 77 349 78 HOH HOH . K 3 HOH A 78 350 79 HOH HOH . K 3 HOH A 79 351 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . J 2 36.143 33.384 9.793 1 160.11 ? C1 MC3 272 A 1 HETATM 2 C C2 MC3 . . . J 2 37.318 33.064 10.742 1 159.32 ? C2 MC3 272 A 1 HETATM 3 C C3 MC3 . . . J 2 37.165 33.716 12.137 1 159 ? C3 MC3 272 A 1 HETATM 4 C C11 MC3 . . . J 2 35.491 33.975 13.987 1 158.4 ? C11 MC3 272 A 1 HETATM 5 C C12 MC3 . . . J 2 36.624 34.653 14.792 1 158.11 ? C12 MC3 272 A 1 HETATM 6 C C13 MC3 . . . J 2 36.411 34.714 16.312 1 157.84 ? C13 MC3 272 A 1 HETATM 7 C C14 MC3 . . . J 2 36.243 33.342 16.966 1 157.35 ? C14 MC3 272 A 1 HETATM 8 C C15 MC3 . . . J 2 35.653 33.463 18.338 1 157.01 ? C15 MC3 272 A 1 HETATM 9 C C16 MC3 . . . J 2 36.573 32.907 19.398 1 156.42 ? C16 MC3 272 A 1 HETATM 10 C C17 MC3 . . . J 2 35.941 33.058 20.767 1 156.08 ? C17 MC3 272 A 1 HETATM 11 C C18 MC3 . . . J 2 36.338 31.922 21.685 1 155.67 ? C18 MC3 272 A 1 HETATM 12 C C31 MC3 . . . J 2 38.857 30.961 11.798 1 157.75 ? C31 MC3 272 A 1 HETATM 13 C C32 MC3 . . . J 2 38.495 30.263 13.106 1 157.31 ? C32 MC3 272 A 1 HETATM 14 C C33 MC3 . . . J 2 39.401 30.749 14.244 1 157.17 ? C33 MC3 272 A 1 HETATM 15 C C34 MC3 . . . J 2 38.75 30.797 15.615 1 157.32 ? C34 MC3 272 A 1 HETATM 16 C C35 MC3 . . . J 2 39.538 30.009 16.65 1 157.79 ? C35 MC3 272 A 1 HETATM 17 C C36 MC3 . . . J 2 40.068 30.854 17.827 1 157.86 ? C36 MC3 272 A 1 HETATM 18 C C37 MC3 . . . J 2 39.234 30.651 19.087 1 158.09 ? C37 MC3 272 A 1 HETATM 19 C C38 MC3 . . . J 2 39.745 31.458 20.253 1 158.35 ? C38 MC3 272 A 1 HETATM 20 C C39 MC3 . . . J 2 39.035 31.055 21.527 1 158.49 ? C39 MC3 272 A 1 HETATM 21 O O2 MC3 . . . J 2 38.271 31.927 10.788 1 158.52 ? O2 MC3 272 A 1 HETATM 22 O O3 MC3 . . . J 2 35.809 33.491 12.636 1 158.73 ? O3 MC3 272 A 1 HETATM 23 O O11 MC3 . . . J 2 34.343 33.814 14.459 1 158.39 ? O11 MC3 272 A 1 HETATM 24 O O31 MC3 . . . J 2 39.448 30.3 10.926 1 157.82 ? O31 MC3 272 A 1 HETATM 25 O O1P MC3 . . . J 2 34.3 34.104 7.971 1 161.58 ? O1P MC3 272 A 1 HETATM 26 O O2P MC3 . . . J 2 35.552 36.27 7.649 1 161.61 ? O2P MC3 272 A 1 HETATM 27 O O3P MC3 . . . J 2 36.678 34.241 8.716 1 161.04 ? O3P MC3 272 A 1 HETATM 28 O O4P MC3 . . . J 2 36.133 34.253 6.281 1 161.69 ? O4P MC3 272 A 1 HETATM 29 P P MC3 . . . J 2 35.654 34.73 7.66 1 161.9 ? P MC3 272 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #