data_2B7Q # _model_server_result.job_id tgCN0pX5UQ4LJx90dVvjFw _model_server_result.datetime_utc '2024-11-27 20:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 2B7Q # _exptl.entry_id 2B7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2B7Q _cell.length_a 148.855 _cell.length_b 148.855 _cell.length_c 145.662 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_553 -y,-x,-z-3/2 0 -1 0 -1 0 0 0 0 -1 0 0 -218.493 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 237 n n P O2P NCN doub 238 n n P O3P NCN sing 239 n n P O5' NCN sing 240 n n O1P HOP1 NCN sing 241 n n O5' C5' NCN sing 242 n n C5' C4' NCN sing 243 n n C5' "H5'1" NCN sing 244 n n C5' "H5'2" NCN sing 245 n n C4' O4' NCN sing 246 n n C4' C3' NCN sing 247 n n C4' H4' NCN sing 248 n n O4' C1' NCN sing 249 n n C3' O3' NCN sing 250 n n C3' C2' NCN sing 251 n n C3' H3' NCN sing 252 n n O3' "HO'3" NCN sing 253 n n C2' O2' NCN sing 254 n n C2' C1' NCN sing 255 n n C2' H2' NCN sing 256 n n O2' "HO'2" NCN sing 257 n n C1' N1 NCN sing 258 n n C1' H1' NCN sing 259 n n N1 C6 NCN sing 260 n y N1 C2 NCN doub 261 n y C6 C5 NCN doub 262 n y C6 H6 NCN sing 263 n n C5 C4 NCN sing 264 n y C5 H5 NCN sing 265 n n C4 C3 NCN doub 266 n y C4 H4 NCN sing 267 n n C3 C2 NCN sing 268 n y C3 C7 NCN sing 269 n n C2 H2 NCN sing 270 n n C7 O7 NCN sing 271 n n C7 O8 NCN doub 272 n n O7 HO7 NCN sing 273 n n # _atom_sites.entry_id 2B7Q _atom_sites.fract_transf_matrix[1][1] 0.006718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NCN A 1 1002 1002 NCN NCN . E 2 NCN B 1 1003 1003 NCN NCN . F 2 NCN C 1 1001 1001 NCN NCN . G 3 HOH A 1 1003 3 HOH TIP . G 3 HOH A 2 1004 12 HOH TIP . G 3 HOH A 3 1005 18 HOH TIP . H 3 HOH B 1 1004 5 HOH TIP . H 3 HOH B 2 1005 8 HOH TIP . H 3 HOH B 3 1006 9 HOH TIP . H 3 HOH B 4 1007 13 HOH TIP . H 3 HOH B 5 1008 15 HOH TIP . I 3 HOH C 1 1002 1 HOH TIP . I 3 HOH C 2 1003 2 HOH TIP . I 3 HOH C 3 1004 4 HOH TIP . I 3 HOH C 4 1005 6 HOH TIP . I 3 HOH C 5 1006 7 HOH TIP . I 3 HOH C 6 1007 10 HOH TIP . I 3 HOH C 7 1008 11 HOH TIP . I 3 HOH C 8 1009 14 HOH TIP . I 3 HOH C 9 1010 16 HOH TIP . I 3 HOH C 10 1011 17 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . D 2 165.837 -148.398 -115.835 1 48.35 ? P NCN 1002 A 1 HETATM 2 O O1P NCN . . . D 2 164.669 -148.686 -114.867 1 47.33 ? O1P NCN 1002 A 1 HETATM 3 O O2P NCN . . . D 2 167.174 -148.026 -115.111 1 49.63 ? O2P NCN 1002 A 1 HETATM 4 O O3P NCN . . . D 2 166.039 -149.604 -116.807 1 47.66 ? O3P NCN 1002 A 1 HETATM 5 O O5' NCN . . . D 2 165.396 -147.022 -116.727 1 46.84 ? O5' NCN 1002 A 1 HETATM 6 C C5' NCN . . . D 2 166.326 -145.965 -117.148 1 49.08 ? C5' NCN 1002 A 1 HETATM 7 C C4' NCN . . . D 2 165.761 -144.804 -118.051 1 52.08 ? C4' NCN 1002 A 1 HETATM 8 O O4' NCN . . . D 2 164.682 -144.057 -117.473 1 52.21 ? O4' NCN 1002 A 1 HETATM 9 C C3' NCN . . . D 2 166.786 -143.644 -118.501 1 53.37 ? C3' NCN 1002 A 1 HETATM 10 O O3' NCN . . . D 2 168.105 -143.932 -119.198 1 54.63 ? O3' NCN 1002 A 1 HETATM 11 C C2' NCN . . . D 2 165.867 -142.72 -119.307 1 53.74 ? C2' NCN 1002 A 1 HETATM 12 O O2' NCN . . . D 2 165.689 -143.068 -120.772 1 53.3 ? O2' NCN 1002 A 1 HETATM 13 C C1' NCN . . . D 2 164.639 -142.727 -118.244 1 53.56 ? C1' NCN 1002 A 1 HETATM 14 N N1 NCN . . . D 2 164.512 -141.657 -117.096 1 54.31 ? N1 NCN 1002 A 1 HETATM 15 C C6 NCN . . . D 2 165.544 -141.543 -116.042 1 54.56 ? C6 NCN 1002 A 1 HETATM 16 C C5 NCN . . . D 2 165.402 -140.552 -114.977 1 54.16 ? C5 NCN 1002 A 1 HETATM 17 C C4 NCN . . . D 2 164.258 -139.723 -114.989 1 54.05 ? C4 NCN 1002 A 1 HETATM 18 C C3 NCN . . . D 2 163.22 -139.801 -116.004 1 54.03 ? C3 NCN 1002 A 1 HETATM 19 C C2 NCN . . . D 2 163.364 -140.763 -117.036 1 54.39 ? C2 NCN 1002 A 1 HETATM 20 C C7 NCN . . . D 2 162.039 -138.827 -115.858 1 53.91 ? C7 NCN 1002 A 1 HETATM 21 O O7 NCN . . . D 2 161.342 -138.863 -114.731 1 54.39 ? O7 NCN 1002 A 1 HETATM 22 O O8 NCN . . . D 2 161.803 -138.042 -116.888 1 54.04 ? O8 NCN 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #