data_2B7Y
#
_model_server_result.job_id            VUZ6APW28ZY1Z6rxLQnjWg 
_model_server_result.datetime_utc      '2024-10-13 00:20:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2b7y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    2B7Y 
#
_exptl.entry_id    2B7Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2B7Y 
_cell.length_a            90 
_cell.length_b            89.3 
_cell.length_c            67.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2B7Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 168 A ASN 168 1_555 F C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale2 C ND2 ASN 168 C ASN 168 1_555 J C1 NAG . C NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
metalc ? metalc1 A OE1 GLU 120 A GLU 120 1_555 G MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc2 A OD2 ASP 122 A ASP 122 1_555 G MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc3 A OD1 ASP 122 A ASP 122 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc4 A OD2 ASP 122 A ASP 122 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc5 A O PHE 124 A PHE 124 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc6 A OD1 ASN 126 A ASN 126 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc7 A OD1 ASP 130 A ASP 130 1_555 G MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc8 A OD2 ASP 130 A ASP 130 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc9 A OD1 ASP 130 A ASP 130 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.238 ? 
metalc ? metalc10 A NE2 HIS 137 A HIS 137 1_555 G MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc11 G MN MN . A MN 501 1_555 M O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc12 H CA CA . A CA 502 1_555 M O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc13 H CA CA . A CA 502 1_555 M O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc14 C OE1 GLU 120 C GLU 120 1_555 K MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc15 C OD2 ASP 122 C ASP 122 1_555 K MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc16 C OD1 ASP 122 C ASP 122 1_555 L CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc17 C OD2 ASP 122 C ASP 122 1_555 L CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc18 C O PHE 124 C PHE 124 1_555 L CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc19 C OD1 ASN 126 C ASN 126 1_555 L CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? 
metalc ? metalc20 C OD1 ASP 130 C ASP 130 1_555 K MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc21 C OD2 ASP 130 C ASP 130 1_555 L CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc22 C NE2 HIS 137 C HIS 137 1_555 K MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc23 K MN MN . C MN 601 1_555 N O HOH . C HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc24 L CA CA . C CA 602 1_555 N O HOH . C HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc25 L CA CA . C CA 602 1_555 N O HOH . C HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLC sing 70 n n 
C1 O1 GLC sing 71 n n 
C1 O5 GLC sing 72 n n 
C1 H1 GLC sing 73 n n 
C2 C3 GLC sing 74 n n 
C2 O2 GLC sing 75 n n 
C2 H2 GLC sing 76 n n 
C3 C4 GLC sing 77 n n 
C3 O3 GLC sing 78 n n 
C3 H3 GLC sing 79 n n 
C4 C5 GLC sing 80 n n 
C4 O4 GLC sing 81 n n 
C4 H4 GLC sing 82 n n 
C5 C6 GLC sing 83 n n 
C5 O5 GLC sing 84 n n 
C5 H5 GLC sing 85 n n 
C6 O6 GLC sing 86 n n 
C6 H61 GLC sing 87 n n 
C6 H62 GLC sing 88 n n 
O1 HO1 GLC sing 89 n n 
O2 HO2 GLC sing 90 n n 
O3 HO3 GLC sing 91 n n 
O4 HO4 GLC sing 92 n n 
O6 HO6 GLC sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GLC a-D-glucopyranose 'COMMON NAME' GMML 1 
GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2B7Y 
_atom_sites.fract_transf_matrix[1][1]    0.011111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GLC A 1 801 801 GLC GLC . 
F 4 NAG A 1 803 803 NAG NAG . 
G 5 MN A 1 501 501 MN MN . 
H 6 CA A 1 502 502 CA CA . 
I 3 GLC C 1 802 802 GLC GLC . 
J 4 NAG C 1 804 804 NAG NAG . 
K 5 MN C 1 601 601 MN MN . 
L 6 CA C 1 602 602 CA CA . 
M 7 HOH A 1 701 701 HOH HOH . 
M 7 HOH A 2 702 702 HOH HOH . 
M 7 HOH A 3 703 703 HOH HOH . 
M 7 HOH A 4 707 707 HOH HOH . 
N 7 HOH C 1 705 705 HOH HOH . 
N 7 HOH C 2 706 706 HOH HOH . 
N 7 HOH C 3 708 708 HOH HOH . 
N 7 HOH C 4 709 709 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLC . . . I 3 -27.094 135.972 37.165 0.4 2 ? C1 GLC 802 C 1 
HETATM 2 C C2 GLC . . . I 3 -26.257 135.085 38.056 0.4 2 ? C2 GLC 802 C 1 
HETATM 3 C C3 GLC . . . I 3 -24.802 135.542 38.129 0.4 2 ? C3 GLC 802 C 1 
HETATM 4 C C4 GLC . . . I 3 -24.243 135.896 36.755 0.4 2 ? C4 GLC 802 C 1 
HETATM 5 C C5 GLC . . . I 3 -25.208 136.874 36.093 0.4 2 ? C5 GLC 802 C 1 
HETATM 6 C C6 GLC . . . I 3 -24.767 137.326 34.724 0.4 2 ? C6 GLC 802 C 1 
HETATM 7 O O1 GLC . . . I 3 -27.274 137.213 37.797 0.4 2 ? O1 GLC 802 C 1 
HETATM 8 O O2 GLC . . . I 3 -26.815 135.245 39.322 0.4 2 ? O2 GLC 802 C 1 
HETATM 9 O O3 GLC . . . I 3 -24.001 134.536 38.699 0.4 2 ? O3 GLC 802 C 1 
HETATM 10 O O4 GLC . . . I 3 -22.939 136.428 36.874 0.4 2 ? O4 GLC 802 C 1 
HETATM 11 O O5 GLC . . . I 3 -26.427 136.182 35.947 0.4 2 ? O5 GLC 802 C 1 
HETATM 12 O O6 GLC . . . I 3 -25.036 136.272 33.842 0.4 2 ? O6 GLC 802 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#