data_2B8J # _model_server_result.job_id ke4k7YWEHU8YrcnND9Nq6A _model_server_result.datetime_utc '2024-12-22 13:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":312}' # _entry.id 2B8J # _exptl.entry_id 2B8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.02 _cell.angle_gamma 90 _cell.entry_id 2B8J _cell.length_a 89.966 _cell.length_b 66.544 _cell.length_c 91.544 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 43 A ASP 44 1_555 C MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A O ASP 45 A ASP 46 1_555 C MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A OD1 ASP 166 A ASP 167 1_555 C MG MG . A MG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 C MG MG . A MG 311 1_555 J O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 C MG MG . A MG 311 1_555 J O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 C MG MG . A MG 311 1_555 J O HOH . A HOH 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc7 B OD2 ASP 43 B ASP 44 1_555 H MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc8 B O ASP 45 B ASP 46 1_555 H MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 B OD1 ASP 166 B ASP 167 1_555 H MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 H MG MG . B MG 312 1_555 K O HOH . B HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc11 H MG MG . B MG 312 1_555 K O HOH . B HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 H MG MG . B MG 312 1_555 K O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2B8J _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 311 311 MG MG . D 3 SPM A 1 653 653 SPM SPM . E 4 PO4 A 1 301 301 PO4 PO4 . F 5 AU A 1 320 320 AU AU . G 6 AU3 A 1 321 321 AU3 AU3 . H 2 MG B 1 312 312 MG MG . I 7 ADN B 1 331 331 ADN ADN . J 8 HOH A 1 654 1 HOH HOH . J 8 HOH A 2 655 2 HOH HOH . J 8 HOH A 3 656 3 HOH HOH . J 8 HOH A 4 657 4 HOH HOH . J 8 HOH A 5 658 5 HOH HOH . J 8 HOH A 6 659 10 HOH HOH . J 8 HOH A 7 660 11 HOH HOH . J 8 HOH A 8 661 12 HOH HOH . J 8 HOH A 9 662 18 HOH HOH . J 8 HOH A 10 663 19 HOH HOH . J 8 HOH A 11 664 20 HOH HOH . J 8 HOH A 12 665 22 HOH HOH . J 8 HOH A 13 666 24 HOH HOH . J 8 HOH A 14 667 25 HOH HOH . J 8 HOH A 15 668 27 HOH HOH . J 8 HOH A 16 669 29 HOH HOH . J 8 HOH A 17 670 30 HOH HOH . J 8 HOH A 18 671 32 HOH HOH . J 8 HOH A 19 672 36 HOH HOH . J 8 HOH A 20 673 38 HOH HOH . J 8 HOH A 21 674 42 HOH HOH . J 8 HOH A 22 675 44 HOH HOH . J 8 HOH A 23 676 45 HOH HOH . J 8 HOH A 24 677 46 HOH HOH . J 8 HOH A 25 678 48 HOH HOH . J 8 HOH A 26 679 49 HOH HOH . J 8 HOH A 27 680 51 HOH HOH . J 8 HOH A 28 681 52 HOH HOH . J 8 HOH A 29 682 53 HOH HOH . J 8 HOH A 30 683 55 HOH HOH . J 8 HOH A 31 684 56 HOH HOH . J 8 HOH A 32 685 60 HOH HOH . J 8 HOH A 33 686 62 HOH HOH . J 8 HOH A 34 687 67 HOH HOH . J 8 HOH A 35 688 68 HOH HOH . J 8 HOH A 36 689 73 HOH HOH . J 8 HOH A 37 690 76 HOH HOH . J 8 HOH A 38 691 77 HOH HOH . J 8 HOH A 39 692 78 HOH HOH . J 8 HOH A 40 693 79 HOH HOH . J 8 HOH A 41 694 80 HOH HOH . J 8 HOH A 42 695 81 HOH HOH . J 8 HOH A 43 696 84 HOH HOH . J 8 HOH A 44 697 85 HOH HOH . J 8 HOH A 45 698 87 HOH HOH . J 8 HOH A 46 699 88 HOH HOH . J 8 HOH A 47 700 90 HOH HOH . J 8 HOH A 48 701 93 HOH HOH . J 8 HOH A 49 702 95 HOH HOH . J 8 HOH A 50 703 97 HOH HOH . J 8 HOH A 51 704 98 HOH HOH . J 8 HOH A 52 705 99 HOH HOH . J 8 HOH A 53 706 100 HOH HOH . J 8 HOH A 54 707 102 HOH HOH . J 8 HOH A 55 708 104 HOH HOH . J 8 HOH A 56 709 105 HOH HOH . J 8 HOH A 57 710 106 HOH HOH . J 8 HOH A 58 711 108 HOH HOH . J 8 HOH A 59 712 112 HOH HOH . J 8 HOH A 60 713 114 HOH HOH . J 8 HOH A 61 714 115 HOH HOH . J 8 HOH A 62 715 117 HOH HOH . J 8 HOH A 63 716 118 HOH HOH . J 8 HOH A 64 717 121 HOH HOH . J 8 HOH A 65 718 122 HOH HOH . J 8 HOH A 66 719 123 HOH HOH . J 8 HOH A 67 720 124 HOH HOH . J 8 HOH A 68 721 125 HOH HOH . J 8 HOH A 69 722 135 HOH HOH . J 8 HOH A 70 723 136 HOH HOH . J 8 HOH A 71 724 137 HOH HOH . J 8 HOH A 72 725 138 HOH HOH . J 8 HOH A 73 726 140 HOH HOH . J 8 HOH A 74 727 141 HOH HOH . J 8 HOH A 75 728 143 HOH HOH . J 8 HOH A 76 729 145 HOH HOH . J 8 HOH A 77 730 146 HOH HOH . J 8 HOH A 78 731 147 HOH HOH . J 8 HOH A 79 732 149 HOH HOH . J 8 HOH A 80 733 150 HOH HOH . J 8 HOH A 81 734 153 HOH HOH . J 8 HOH A 82 735 156 HOH HOH . J 8 HOH A 83 736 158 HOH HOH . J 8 HOH A 84 737 159 HOH HOH . J 8 HOH A 85 738 161 HOH HOH . J 8 HOH A 86 739 162 HOH HOH . J 8 HOH A 87 740 163 HOH HOH . J 8 HOH A 88 741 164 HOH HOH . J 8 HOH A 89 742 165 HOH HOH . J 8 HOH A 90 743 167 HOH HOH . J 8 HOH A 91 744 171 HOH HOH . J 8 HOH A 92 745 173 HOH HOH . J 8 HOH A 93 746 174 HOH HOH . J 8 HOH A 94 747 178 HOH HOH . J 8 HOH A 95 748 179 HOH HOH . J 8 HOH A 96 749 180 HOH HOH . J 8 HOH A 97 750 181 HOH HOH . J 8 HOH A 98 751 182 HOH HOH . J 8 HOH A 99 752 184 HOH HOH . J 8 HOH A 100 753 186 HOH HOH . J 8 HOH A 101 754 187 HOH HOH . J 8 HOH A 102 755 188 HOH HOH . J 8 HOH A 103 756 189 HOH HOH . J 8 HOH A 104 757 190 HOH HOH . J 8 HOH A 105 758 191 HOH HOH . J 8 HOH A 106 759 192 HOH HOH . J 8 HOH A 107 760 193 HOH HOH . J 8 HOH A 108 761 194 HOH HOH . J 8 HOH A 109 762 195 HOH HOH . J 8 HOH A 110 763 196 HOH HOH . J 8 HOH A 111 764 197 HOH HOH . J 8 HOH A 112 765 199 HOH HOH . J 8 HOH A 113 766 200 HOH HOH . J 8 HOH A 114 767 201 HOH HOH . J 8 HOH A 115 768 204 HOH HOH . J 8 HOH A 116 769 210 HOH HOH . J 8 HOH A 117 770 211 HOH HOH . K 8 HOH B 1 332 6 HOH HOH . K 8 HOH B 2 333 7 HOH HOH . K 8 HOH B 3 334 8 HOH HOH . K 8 HOH B 4 335 9 HOH HOH . K 8 HOH B 5 336 13 HOH HOH . K 8 HOH B 6 337 14 HOH HOH . K 8 HOH B 7 338 15 HOH HOH . K 8 HOH B 8 339 16 HOH HOH . K 8 HOH B 9 340 17 HOH HOH . K 8 HOH B 10 341 21 HOH HOH . K 8 HOH B 11 342 23 HOH HOH . K 8 HOH B 12 343 26 HOH HOH . K 8 HOH B 13 344 28 HOH HOH . K 8 HOH B 14 345 31 HOH HOH . K 8 HOH B 15 346 33 HOH HOH . K 8 HOH B 16 347 34 HOH HOH . K 8 HOH B 17 348 35 HOH HOH . K 8 HOH B 18 349 37 HOH HOH . K 8 HOH B 19 350 39 HOH HOH . K 8 HOH B 20 351 40 HOH HOH . K 8 HOH B 21 352 41 HOH HOH . K 8 HOH B 22 353 43 HOH HOH . K 8 HOH B 23 354 47 HOH HOH . K 8 HOH B 24 355 50 HOH HOH . K 8 HOH B 25 356 54 HOH HOH . K 8 HOH B 26 357 57 HOH HOH . K 8 HOH B 27 358 58 HOH HOH . K 8 HOH B 28 359 59 HOH HOH . K 8 HOH B 29 360 61 HOH HOH . K 8 HOH B 30 361 63 HOH HOH . K 8 HOH B 31 362 64 HOH HOH . K 8 HOH B 32 363 65 HOH HOH . K 8 HOH B 33 364 66 HOH HOH . K 8 HOH B 34 365 69 HOH HOH . K 8 HOH B 35 366 70 HOH HOH . K 8 HOH B 36 367 71 HOH HOH . K 8 HOH B 37 368 72 HOH HOH . K 8 HOH B 38 369 74 HOH HOH . K 8 HOH B 39 370 75 HOH HOH . K 8 HOH B 40 371 82 HOH HOH . K 8 HOH B 41 372 83 HOH HOH . K 8 HOH B 42 373 86 HOH HOH . K 8 HOH B 43 374 89 HOH HOH . K 8 HOH B 44 375 91 HOH HOH . K 8 HOH B 45 376 92 HOH HOH . K 8 HOH B 46 377 94 HOH HOH . K 8 HOH B 47 378 96 HOH HOH . K 8 HOH B 48 379 101 HOH HOH . K 8 HOH B 49 380 103 HOH HOH . K 8 HOH B 50 381 107 HOH HOH . K 8 HOH B 51 382 109 HOH HOH . K 8 HOH B 52 383 110 HOH HOH . K 8 HOH B 53 384 111 HOH HOH . K 8 HOH B 54 385 113 HOH HOH . K 8 HOH B 55 386 116 HOH HOH . K 8 HOH B 56 387 119 HOH HOH . K 8 HOH B 57 388 120 HOH HOH . K 8 HOH B 58 389 126 HOH HOH . K 8 HOH B 59 390 127 HOH HOH . K 8 HOH B 60 391 128 HOH HOH . K 8 HOH B 61 392 129 HOH HOH . K 8 HOH B 62 393 130 HOH HOH . K 8 HOH B 63 394 131 HOH HOH . K 8 HOH B 64 395 132 HOH HOH . K 8 HOH B 65 396 133 HOH HOH . K 8 HOH B 66 397 134 HOH HOH . K 8 HOH B 67 398 139 HOH HOH . K 8 HOH B 68 399 142 HOH HOH . K 8 HOH B 69 400 144 HOH HOH . K 8 HOH B 70 401 148 HOH HOH . K 8 HOH B 71 402 151 HOH HOH . K 8 HOH B 72 403 152 HOH HOH . K 8 HOH B 73 404 154 HOH HOH . K 8 HOH B 74 405 155 HOH HOH . K 8 HOH B 75 406 157 HOH HOH . K 8 HOH B 76 407 160 HOH HOH . K 8 HOH B 77 408 166 HOH HOH . K 8 HOH B 78 409 168 HOH HOH . K 8 HOH B 79 410 169 HOH HOH . K 8 HOH B 80 411 170 HOH HOH . K 8 HOH B 81 412 172 HOH HOH . K 8 HOH B 82 413 175 HOH HOH . K 8 HOH B 83 414 176 HOH HOH . K 8 HOH B 84 415 177 HOH HOH . K 8 HOH B 85 416 183 HOH HOH . K 8 HOH B 86 417 185 HOH HOH . K 8 HOH B 87 418 198 HOH HOH . K 8 HOH B 88 419 202 HOH HOH . K 8 HOH B 89 420 203 HOH HOH . K 8 HOH B 90 421 205 HOH HOH . K 8 HOH B 91 422 206 HOH HOH . K 8 HOH B 92 423 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.368 _atom_site.Cartn_y -7.16 _atom_site.Cartn_z 24.022 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 312 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #