data_2B8M # _model_server_result.job_id fSZdzYjT3X7qKDfclqH8KA _model_server_result.datetime_utc '2024-11-14 01:51:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2b8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":123}' # _entry.id 2B8M # _exptl.entry_id 2B8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2B8M _cell.length_a 49.83 _cell.length_b 49.83 _cell.length_c 78.74 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 52.493333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLN 39 A GLN 38 1_555 A N MSE 40 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 40 A MSE 39 1_555 A N PRO 41 A PRO 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 A C GLU 57 A GLU 56 1_555 A N MSE 58 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 58 A MSE 57 1_555 A N THR 59 A THR 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C LYS 83 A LYS 82 1_555 A N MSE 84 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C MSE 84 A MSE 83 1_555 A N LEU 85 A LEU 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2B8M _atom_sites.fract_transf_matrix[1][1] 0.02007 _atom_sites.fract_transf_matrix[1][2] 0.01159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 1 SO4 SO4 . C 2 SO4 A 1 118 2 SO4 SO4 . D 2 SO4 A 1 119 3 SO4 SO4 . E 3 CL A 1 120 7 CL CL . F 4 EDO A 1 121 4 EDO EDO . G 4 EDO A 1 122 5 EDO EDO . H 4 EDO A 1 123 6 EDO EDO . I 5 HOH A 1 124 8 HOH HOH . I 5 HOH A 2 125 9 HOH HOH . I 5 HOH A 3 126 10 HOH HOH . I 5 HOH A 4 127 11 HOH HOH . I 5 HOH A 5 128 12 HOH HOH . I 5 HOH A 6 129 13 HOH HOH . I 5 HOH A 7 130 14 HOH HOH . I 5 HOH A 8 131 15 HOH HOH . I 5 HOH A 9 132 16 HOH HOH . I 5 HOH A 10 133 17 HOH HOH . I 5 HOH A 11 134 18 HOH HOH . I 5 HOH A 12 135 19 HOH HOH . I 5 HOH A 13 136 20 HOH HOH . I 5 HOH A 14 137 21 HOH HOH . I 5 HOH A 15 138 22 HOH HOH . I 5 HOH A 16 139 23 HOH HOH . I 5 HOH A 17 140 24 HOH HOH . I 5 HOH A 18 141 25 HOH HOH . I 5 HOH A 19 142 26 HOH HOH . I 5 HOH A 20 143 27 HOH HOH . I 5 HOH A 21 144 28 HOH HOH . I 5 HOH A 22 145 29 HOH HOH . I 5 HOH A 23 146 30 HOH HOH . I 5 HOH A 24 147 31 HOH HOH . I 5 HOH A 25 148 32 HOH HOH . I 5 HOH A 26 149 33 HOH HOH . I 5 HOH A 27 150 34 HOH HOH . I 5 HOH A 28 151 35 HOH HOH . I 5 HOH A 29 152 36 HOH HOH . I 5 HOH A 30 153 37 HOH HOH . I 5 HOH A 31 154 38 HOH HOH . I 5 HOH A 32 155 39 HOH HOH . I 5 HOH A 33 156 40 HOH HOH . I 5 HOH A 34 157 41 HOH HOH . I 5 HOH A 35 158 42 HOH HOH . I 5 HOH A 36 159 43 HOH HOH . I 5 HOH A 37 160 44 HOH HOH . I 5 HOH A 38 161 45 HOH HOH . I 5 HOH A 39 162 46 HOH HOH . I 5 HOH A 40 163 47 HOH HOH . I 5 HOH A 41 164 48 HOH HOH . I 5 HOH A 42 165 49 HOH HOH . I 5 HOH A 43 166 50 HOH HOH . I 5 HOH A 44 167 51 HOH HOH . I 5 HOH A 45 168 52 HOH HOH . I 5 HOH A 46 169 53 HOH HOH . I 5 HOH A 47 170 54 HOH HOH . I 5 HOH A 48 171 55 HOH HOH . I 5 HOH A 49 172 56 HOH HOH . I 5 HOH A 50 173 57 HOH HOH . I 5 HOH A 51 174 58 HOH HOH . I 5 HOH A 52 175 59 HOH HOH . I 5 HOH A 53 176 60 HOH HOH . I 5 HOH A 54 177 61 HOH HOH . I 5 HOH A 55 178 62 HOH HOH . I 5 HOH A 56 179 63 HOH HOH . I 5 HOH A 57 180 64 HOH HOH . I 5 HOH A 58 181 65 HOH HOH . I 5 HOH A 59 182 66 HOH HOH . I 5 HOH A 60 183 67 HOH HOH . I 5 HOH A 61 184 68 HOH HOH . I 5 HOH A 62 185 69 HOH HOH . I 5 HOH A 63 186 70 HOH HOH . I 5 HOH A 64 187 71 HOH HOH . I 5 HOH A 65 188 72 HOH HOH . I 5 HOH A 66 189 73 HOH HOH . I 5 HOH A 67 190 74 HOH HOH . I 5 HOH A 68 191 75 HOH HOH . I 5 HOH A 69 192 76 HOH HOH . I 5 HOH A 70 193 77 HOH HOH . I 5 HOH A 71 194 78 HOH HOH . I 5 HOH A 72 195 79 HOH HOH . I 5 HOH A 73 196 80 HOH HOH . I 5 HOH A 74 197 81 HOH HOH . I 5 HOH A 75 198 82 HOH HOH . I 5 HOH A 76 199 83 HOH HOH . I 5 HOH A 77 200 84 HOH HOH . I 5 HOH A 78 201 85 HOH HOH . I 5 HOH A 79 202 86 HOH HOH . I 5 HOH A 80 203 87 HOH HOH . I 5 HOH A 81 204 88 HOH HOH . I 5 HOH A 82 205 89 HOH HOH . I 5 HOH A 83 206 90 HOH HOH . I 5 HOH A 84 207 91 HOH HOH . I 5 HOH A 85 208 92 HOH HOH . I 5 HOH A 86 209 93 HOH HOH . I 5 HOH A 87 210 94 HOH HOH . I 5 HOH A 88 211 95 HOH HOH . I 5 HOH A 89 212 96 HOH HOH . I 5 HOH A 90 213 97 HOH HOH . I 5 HOH A 91 214 98 HOH HOH . I 5 HOH A 92 215 99 HOH HOH . I 5 HOH A 93 216 100 HOH HOH . I 5 HOH A 94 217 101 HOH HOH . I 5 HOH A 95 218 102 HOH HOH . I 5 HOH A 96 219 103 HOH HOH . I 5 HOH A 97 220 104 HOH HOH . I 5 HOH A 98 221 105 HOH HOH . I 5 HOH A 99 222 106 HOH HOH . I 5 HOH A 100 223 107 HOH HOH . I 5 HOH A 101 224 108 HOH HOH . I 5 HOH A 102 225 109 HOH HOH . I 5 HOH A 103 226 110 HOH HOH . I 5 HOH A 104 227 111 HOH HOH . I 5 HOH A 105 228 112 HOH HOH . I 5 HOH A 106 229 113 HOH HOH . I 5 HOH A 107 230 114 HOH HOH . I 5 HOH A 108 231 115 HOH HOH . I 5 HOH A 109 232 116 HOH HOH . I 5 HOH A 110 233 117 HOH HOH . I 5 HOH A 111 234 118 HOH HOH . I 5 HOH A 112 235 119 HOH HOH . I 5 HOH A 113 236 120 HOH HOH . I 5 HOH A 114 237 121 HOH HOH . I 5 HOH A 115 238 122 HOH HOH . I 5 HOH A 116 239 123 HOH HOH . I 5 HOH A 117 240 124 HOH HOH . I 5 HOH A 118 241 125 HOH HOH . I 5 HOH A 119 242 126 HOH HOH . I 5 HOH A 120 243 127 HOH HOH . I 5 HOH A 121 244 128 HOH HOH . I 5 HOH A 122 245 129 HOH HOH . I 5 HOH A 123 246 130 HOH HOH . I 5 HOH A 124 247 131 HOH HOH . I 5 HOH A 125 248 132 HOH HOH . I 5 HOH A 126 249 133 HOH HOH . I 5 HOH A 127 250 134 HOH HOH . I 5 HOH A 128 251 135 HOH HOH . I 5 HOH A 129 252 136 HOH HOH . I 5 HOH A 130 253 137 HOH HOH . I 5 HOH A 131 254 138 HOH HOH . I 5 HOH A 132 255 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 28.063 8.5 33.964 1 36.03 ? C1 EDO 123 A 1 HETATM 2 O O1 EDO . . . H 4 27.018 8.766 34.889 1 37.61 ? O1 EDO 123 A 1 HETATM 3 C C2 EDO . . . H 4 29.152 9.55 34.037 1 35.75 ? C2 EDO 123 A 1 HETATM 4 O O2 EDO . . . H 4 30.283 9.081 34.765 1 35.19 ? O2 EDO 123 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #