data_2BB3 # _model_server_result.job_id kop-A9a1KVChoqQMPKdSyQ _model_server_result.datetime_utc '2024-11-16 11:04:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 2BB3 # _exptl.entry_id 2BB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BB3 _cell.length_a 88.191 _cell.length_b 88.418 _cell.length_c 115.932 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 57.966 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 115.932 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 10 1_555 A SG CYS 188 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 32 B CYS 10 1_555 B SG CYS 188 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A C HIS 22 A HIS 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N ILE 24 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ILE 82 A ILE 60 1_555 A N MSE 83 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 83 A MSE 61 1_555 A N GLU 84 A GLU 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C PRO 99 A PRO 77 1_555 A N MSE 100 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 100 A MSE 78 1_555 A N VAL 101 A VAL 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C CYS 188 A CYS 166 1_555 A N MSE 189 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 189 A MSE 167 1_555 A N GLU 190 A GLU 168 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C MSE 189 A MSE 167 1_555 A N GLU 190 A GLU 168 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.338 ? covale ? covale10 B C HIS 22 B HIS 0 1_555 B N MSE 23 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C MSE 23 B MSE 1 1_555 B N ILE 24 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C ILE 82 B ILE 60 1_555 B N MSE 83 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C MSE 83 B MSE 61 1_555 B N GLU 84 B GLU 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C PRO 99 B PRO 77 1_555 B N MSE 100 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 B C MSE 100 B MSE 78 1_555 B N VAL 101 B VAL 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 B C CYS 188 B CYS 166 1_555 B N MSE 189 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale17 B C MSE 189 B MSE 167 1_555 B N GLU 190 B GLU 368 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.32 ? covale ? covale18 B C MSE 189 B MSE 167 1_555 B N GLU 190 B GLU 368 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BB3 _atom_sites.fract_transf_matrix[1][1] 0.011339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 201 201 SAH SAH . D 2 SAH B 1 203 203 SAH SAH . E 3 HOH A 1 202 4 HOH HOH . E 3 HOH A 2 203 5 HOH HOH . E 3 HOH A 3 204 6 HOH HOH . E 3 HOH A 4 205 9 HOH HOH . E 3 HOH A 5 206 11 HOH HOH . E 3 HOH A 6 207 12 HOH HOH . E 3 HOH A 7 208 13 HOH HOH . E 3 HOH A 8 209 15 HOH HOH . E 3 HOH A 9 210 19 HOH HOH . E 3 HOH A 10 211 20 HOH HOH . E 3 HOH A 11 212 23 HOH HOH . E 3 HOH A 12 213 24 HOH HOH . E 3 HOH A 13 214 26 HOH HOH . E 3 HOH A 14 215 28 HOH HOH . E 3 HOH A 15 216 29 HOH HOH . E 3 HOH A 16 217 32 HOH HOH . E 3 HOH A 17 218 33 HOH HOH . E 3 HOH A 18 219 34 HOH HOH . E 3 HOH A 19 220 35 HOH HOH . E 3 HOH A 20 221 39 HOH HOH . E 3 HOH A 21 222 40 HOH HOH . E 3 HOH A 22 223 41 HOH HOH . E 3 HOH A 23 224 42 HOH HOH . E 3 HOH A 24 225 44 HOH HOH . E 3 HOH A 25 226 46 HOH HOH . E 3 HOH A 26 227 48 HOH HOH . E 3 HOH A 27 228 49 HOH HOH . E 3 HOH A 28 229 50 HOH HOH . E 3 HOH A 29 230 51 HOH HOH . E 3 HOH A 30 231 56 HOH HOH . E 3 HOH A 31 232 58 HOH HOH . E 3 HOH A 32 233 60 HOH HOH . E 3 HOH A 33 234 62 HOH HOH . E 3 HOH A 34 235 64 HOH HOH . E 3 HOH A 35 236 65 HOH HOH . E 3 HOH A 36 237 66 HOH HOH . E 3 HOH A 37 238 67 HOH HOH . E 3 HOH A 38 239 68 HOH HOH . E 3 HOH A 39 240 69 HOH HOH . E 3 HOH A 40 241 70 HOH HOH . E 3 HOH A 41 242 71 HOH HOH . E 3 HOH A 42 243 72 HOH HOH . E 3 HOH A 43 244 83 HOH HOH . E 3 HOH A 44 245 84 HOH HOH . E 3 HOH A 45 246 85 HOH HOH . E 3 HOH A 46 247 86 HOH HOH . E 3 HOH A 47 248 87 HOH HOH . E 3 HOH A 48 249 88 HOH HOH . E 3 HOH A 49 250 89 HOH HOH . E 3 HOH A 50 251 90 HOH HOH . E 3 HOH A 51 252 99 HOH HOH . E 3 HOH A 52 253 102 HOH HOH . E 3 HOH A 53 254 106 HOH HOH . E 3 HOH A 54 255 107 HOH HOH . E 3 HOH A 55 256 108 HOH HOH . E 3 HOH A 56 257 109 HOH HOH . E 3 HOH A 57 258 110 HOH HOH . E 3 HOH A 58 259 111 HOH HOH . E 3 HOH A 59 260 112 HOH HOH . E 3 HOH A 60 261 114 HOH HOH . E 3 HOH A 61 262 115 HOH HOH . E 3 HOH A 62 263 116 HOH HOH . E 3 HOH A 63 264 117 HOH HOH . E 3 HOH A 64 265 118 HOH HOH . E 3 HOH A 65 266 120 HOH HOH . E 3 HOH A 66 267 124 HOH HOH . E 3 HOH A 67 268 128 HOH HOH . E 3 HOH A 68 269 131 HOH HOH . E 3 HOH A 69 270 133 HOH HOH . E 3 HOH A 70 271 134 HOH HOH . E 3 HOH A 71 272 135 HOH HOH . E 3 HOH A 72 273 136 HOH HOH . E 3 HOH A 73 274 138 HOH HOH . E 3 HOH A 74 275 140 HOH HOH . E 3 HOH A 75 276 144 HOH HOH . E 3 HOH A 76 277 145 HOH HOH . E 3 HOH A 77 278 146 HOH HOH . E 3 HOH A 78 279 147 HOH HOH . E 3 HOH A 79 280 148 HOH HOH . E 3 HOH A 80 281 149 HOH HOH . E 3 HOH A 81 282 150 HOH HOH . E 3 HOH A 82 283 152 HOH HOH . E 3 HOH A 83 284 153 HOH HOH . E 3 HOH A 84 285 156 HOH HOH . E 3 HOH A 85 286 157 HOH HOH . E 3 HOH A 86 287 158 HOH HOH . E 3 HOH A 87 288 160 HOH HOH . E 3 HOH A 88 289 161 HOH HOH . E 3 HOH A 89 290 164 HOH HOH . E 3 HOH A 90 291 165 HOH HOH . E 3 HOH A 91 292 166 HOH HOH . E 3 HOH A 92 293 167 HOH HOH . E 3 HOH A 93 294 168 HOH HOH . E 3 HOH A 94 295 169 HOH HOH . E 3 HOH A 95 296 171 HOH HOH . E 3 HOH A 96 297 176 HOH HOH . E 3 HOH A 97 298 177 HOH HOH . E 3 HOH A 98 299 178 HOH HOH . E 3 HOH A 99 300 180 HOH HOH . E 3 HOH A 100 301 182 HOH HOH . E 3 HOH A 101 302 184 HOH HOH . F 3 HOH B 1 375 1 HOH HOH . F 3 HOH B 2 376 2 HOH HOH . F 3 HOH B 3 377 3 HOH HOH . F 3 HOH B 4 378 7 HOH HOH . F 3 HOH B 5 379 8 HOH HOH . F 3 HOH B 6 380 10 HOH HOH . F 3 HOH B 7 381 14 HOH HOH . F 3 HOH B 8 382 16 HOH HOH . F 3 HOH B 9 383 17 HOH HOH . F 3 HOH B 10 384 18 HOH HOH . F 3 HOH B 11 385 21 HOH HOH . F 3 HOH B 12 386 22 HOH HOH . F 3 HOH B 13 387 25 HOH HOH . F 3 HOH B 14 388 27 HOH HOH . F 3 HOH B 15 389 30 HOH HOH . F 3 HOH B 16 390 31 HOH HOH . F 3 HOH B 17 391 36 HOH HOH . F 3 HOH B 18 392 37 HOH HOH . F 3 HOH B 19 393 38 HOH HOH . F 3 HOH B 20 394 43 HOH HOH . F 3 HOH B 21 395 45 HOH HOH . F 3 HOH B 22 396 47 HOH HOH . F 3 HOH B 23 397 52 HOH HOH . F 3 HOH B 24 398 53 HOH HOH . F 3 HOH B 25 399 54 HOH HOH . F 3 HOH B 26 400 55 HOH HOH . F 3 HOH B 27 401 57 HOH HOH . F 3 HOH B 28 402 59 HOH HOH . F 3 HOH B 29 403 61 HOH HOH . F 3 HOH B 30 404 63 HOH HOH . F 3 HOH B 31 405 73 HOH HOH . F 3 HOH B 32 406 74 HOH HOH . F 3 HOH B 33 407 75 HOH HOH . F 3 HOH B 34 408 76 HOH HOH . F 3 HOH B 35 409 77 HOH HOH . F 3 HOH B 36 410 78 HOH HOH . F 3 HOH B 37 411 79 HOH HOH . F 3 HOH B 38 412 80 HOH HOH . F 3 HOH B 39 413 81 HOH HOH . F 3 HOH B 40 414 82 HOH HOH . F 3 HOH B 41 415 91 HOH HOH . F 3 HOH B 42 416 92 HOH HOH . F 3 HOH B 43 417 93 HOH HOH . F 3 HOH B 44 418 94 HOH HOH . F 3 HOH B 45 419 95 HOH HOH . F 3 HOH B 46 420 96 HOH HOH . F 3 HOH B 47 421 97 HOH HOH . F 3 HOH B 48 422 98 HOH HOH . F 3 HOH B 49 423 100 HOH HOH . F 3 HOH B 50 424 101 HOH HOH . F 3 HOH B 51 425 103 HOH HOH . F 3 HOH B 52 426 104 HOH HOH . F 3 HOH B 53 427 105 HOH HOH . F 3 HOH B 54 428 113 HOH HOH . F 3 HOH B 55 429 119 HOH HOH . F 3 HOH B 56 430 121 HOH HOH . F 3 HOH B 57 431 122 HOH HOH . F 3 HOH B 58 432 127 HOH HOH . F 3 HOH B 59 433 129 HOH HOH . F 3 HOH B 60 434 130 HOH HOH . F 3 HOH B 61 435 132 HOH HOH . F 3 HOH B 62 436 137 HOH HOH . F 3 HOH B 63 437 139 HOH HOH . F 3 HOH B 64 438 141 HOH HOH . F 3 HOH B 65 439 142 HOH HOH . F 3 HOH B 66 440 143 HOH HOH . F 3 HOH B 67 441 154 HOH HOH . F 3 HOH B 68 442 155 HOH HOH . F 3 HOH B 69 443 159 HOH HOH . F 3 HOH B 70 444 162 HOH HOH . F 3 HOH B 71 445 163 HOH HOH . F 3 HOH B 72 446 170 HOH HOH . F 3 HOH B 73 447 172 HOH HOH . F 3 HOH B 74 448 173 HOH HOH . F 3 HOH B 75 449 174 HOH HOH . F 3 HOH B 76 450 175 HOH HOH . F 3 HOH B 77 451 179 HOH HOH . F 3 HOH B 78 452 181 HOH HOH . F 3 HOH B 79 453 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 9.812 20.655 30.934 1 34.82 ? N SAH 201 A 1 HETATM 2 C CA SAH . . . C 2 9.425 20.804 32.279 1 35.15 ? CA SAH 201 A 1 HETATM 3 C CB SAH . . . C 2 10.01 22.073 32.897 1 36.69 ? CB SAH 201 A 1 HETATM 4 C CG SAH . . . C 2 11.503 22.363 32.959 1 37.97 ? CG SAH 201 A 1 HETATM 5 S SD SAH . . . C 2 12.051 23.996 33.378 1 40.17 ? SD SAH 201 A 1 HETATM 6 C C SAH . . . C 2 7.945 20.692 32.342 1 36.43 ? C SAH 201 A 1 HETATM 7 O O SAH . . . C 2 7.596 20.587 33.449 1 37.81 ? O SAH 201 A 1 HETATM 8 O OXT SAH . . . C 2 7.255 20.748 31.361 1 38.62 ? OXT SAH 201 A 1 HETATM 9 C C5' SAH . . . C 2 12.281 23.431 35.039 1 41.59 ? C5' SAH 201 A 1 HETATM 10 C C4' SAH . . . C 2 11.363 24.071 36.064 1 40.98 ? C4' SAH 201 A 1 HETATM 11 O O4' SAH . . . C 2 10.107 23.517 36.117 1 38.14 ? O4' SAH 201 A 1 HETATM 12 C C3' SAH . . . C 2 11.876 24.157 37.469 1 39.84 ? C3' SAH 201 A 1 HETATM 13 O O3' SAH . . . C 2 12.747 25.184 37.69 1 39.85 ? O3' SAH 201 A 1 HETATM 14 C C2' SAH . . . C 2 10.597 24.316 38.208 1 39.34 ? C2' SAH 201 A 1 HETATM 15 O O2' SAH . . . C 2 10.234 25.621 38.342 1 38.44 ? O2' SAH 201 A 1 HETATM 16 C C1' SAH . . . C 2 9.59 23.622 37.364 1 38.14 ? C1' SAH 201 A 1 HETATM 17 N N9 SAH . . . C 2 9.363 22.278 37.839 1 39.17 ? N9 SAH 201 A 1 HETATM 18 C C8 SAH . . . C 2 9.746 21.197 37.231 1 35.42 ? C8 SAH 201 A 1 HETATM 19 N N7 SAH . . . C 2 9.358 20.14 37.853 1 38.2 ? N7 SAH 201 A 1 HETATM 20 C C5 SAH . . . C 2 8.707 20.523 38.883 1 36.02 ? C5 SAH 201 A 1 HETATM 21 C C6 SAH . . . C 2 8.081 19.826 39.862 1 36.43 ? C6 SAH 201 A 1 HETATM 22 N N6 SAH . . . C 2 8.067 18.544 39.924 1 31.5 ? N6 SAH 201 A 1 HETATM 23 N N1 SAH . . . C 2 7.462 20.503 40.807 1 38.33 ? N1 SAH 201 A 1 HETATM 24 C C2 SAH . . . C 2 7.467 21.839 40.794 1 37.26 ? C2 SAH 201 A 1 HETATM 25 N N3 SAH . . . C 2 8.073 22.49 39.828 1 37.45 ? N3 SAH 201 A 1 HETATM 26 C C4 SAH . . . C 2 8.697 21.857 38.889 1 35.91 ? C4 SAH 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #