data_2BBO # _model_server_result.job_id O1Ht4sqMqvyu8vraHTQQNA _model_server_result.datetime_utc '2024-11-24 19:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2BBO # _exptl.entry_id 2BBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BBO _cell.length_a 57.836 _cell.length_b 57.836 _cell.length_c 141.303 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G ATP . A ATP 1 1_555 B MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 C O2B ATP . A ATP 1 1_555 B MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 B MG MG . A MG 2 1_555 D O HOH . A HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 B MG MG . A MG 2 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc5 B MG MG . A MG 2 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2BBO _atom_sites.fract_transf_matrix[1][1] 0.01729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2 2 MG MG . C 3 ATP A 1 1 1 ATP ATP . D 4 HOH A 1 3 3 HOH HOH . D 4 HOH A 2 4 4 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 31 31 HOH HOH . D 4 HOH A 30 32 32 HOH HOH . D 4 HOH A 31 33 33 HOH HOH . D 4 HOH A 32 34 34 HOH HOH . D 4 HOH A 33 35 35 HOH HOH . D 4 HOH A 34 36 36 HOH HOH . D 4 HOH A 35 37 37 HOH HOH . D 4 HOH A 36 38 38 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 61.333 33.773 82.089 1 40.62 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . C 3 61.726 32.72 81.077 1 41.49 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . C 3 59.85 33.982 82.257 1 40.23 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . C 3 62.064 33.616 83.403 1 40.81 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . C 3 61.278 35.974 80.228 1 40.86 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . C 3 62.002 35.593 78.962 1 41.18 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . C 3 59.775 35.851 80.256 1 40.27 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . C 3 61.917 35.151 81.461 1 40.51 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . C 3 60.656 38.691 80.789 1 46.75 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . C 3 59.695 38.361 81.91 1 46.25 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . C 3 60.124 39.109 79.443 1 46.68 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . C 3 61.714 37.482 80.607 1 43.91 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . C 3 61.534 39.912 81.327 1 50.32 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . C 3 62.791 40.335 80.801 1 54.69 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . C 3 63.246 41.449 81.74 1 58.08 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . C 3 62.266 42.497 81.746 1 59.46 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . C 3 63.362 40.935 83.172 1 59.5 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . C 3 64.686 41.198 83.645 1 60.05 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . C 3 62.303 41.683 83.974 1 60.43 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . C 3 62.801 42.184 85.222 1 61.58 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . C 3 61.858 42.831 83.077 1 61.3 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . C 3 60.385 43.034 83.142 1 61.8 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . C 3 59.442 42.131 82.81 1 62.26 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . C 3 58.189 42.634 82.983 1 62.66 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . C 3 58.317 43.896 83.438 1 62.36 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . C 3 57.396 44.999 83.827 1 62.17 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . C 3 56.05 44.851 83.768 1 61.99 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . C 3 57.947 46.165 84.247 1 62.28 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . C 3 59.285 46.335 84.315 1 62.35 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . C 3 60.176 45.379 83.975 1 62.4 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . C 3 59.767 44.156 83.538 1 62.28 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #