data_2BBQ # _model_server_result.job_id UKD5NH9TgZxLMIsvNKz64A _model_server_result.datetime_utc '2024-10-19 16:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":532}' # _entry.id 2BBQ # _exptl.entry_id 2BBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 864.811 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PARPARGYL-5,8-DIDEAZAFOLATE-4-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BBQ _cell.length_a 127.1 _cell.length_b 127.1 _cell.length_c 67.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 146 1_555 C C6 UMP . A UMP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale2 B SG CYS 146 B CYS 146 1_555 E C6 UMP . B UMP 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? # _chem_comp.formula 'C39 H44 N8 O15' _chem_comp.formula_weight 864.811 _chem_comp.id PFG _chem_comp.mon_nstd_flag . _chem_comp.name '10-PARPARGYL-5,8-DIDEAZAFOLATE-4-GLUTAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PFG sing 237 n y N1 C8A PFG sing 238 n y N1 HN1 PFG sing 239 n n C2 NA2 PFG sing 240 n n C2 N3 PFG doub 241 n y NA2 HN21 PFG sing 242 n n NA2 HN22 PFG sing 243 n n N3 C4 PFG sing 244 n y C4 O4 PFG doub 245 n n C4 C4A PFG sing 246 n y C4A C5 PFG doub 247 n y C4A C8A PFG sing 248 n y C5 C6 PFG sing 249 n y C5 H5 PFG sing 250 n n C6 C7 PFG doub 251 n y C6 C9 PFG sing 252 n n C7 C8 PFG sing 253 n y C7 H7 PFG sing 254 n n C8 C8A PFG doub 255 n y C8 H8 PFG sing 256 n n C9 N10 PFG sing 257 n n C9 H91 PFG sing 258 n n C9 H92 PFG sing 259 n n N10 CP1 PFG sing 260 n n N10 C14 PFG sing 261 n n CP1 CP2 PFG sing 262 n n CP1 HP11 PFG sing 263 n n CP1 HP12 PFG sing 264 n n CP2 CP3 PFG trip 265 n n CP3 HP3 PFG sing 266 n n C11 C12 PFG doub 267 n y C11 C16 PFG sing 268 n y C11 C PFG sing 269 n n C12 C13 PFG sing 270 n y C12 H12 PFG sing 271 n n C13 C14 PFG doub 272 n y C13 H13 PFG sing 273 n n C14 C15 PFG sing 274 n y C15 C16 PFG doub 275 n y C15 H15 PFG sing 276 n n C16 H16 PFG sing 277 n n C O PFG doub 278 n n C NP1 PFG sing 279 n n NP1 CA1 PFG sing 280 n n NP1 HNP1 PFG sing 281 n n CA1 CB1 PFG sing 282 n n CA1 CT1 PFG sing 283 n n CA1 HA1 PFG sing 284 n n CB1 CG1 PFG sing 285 n n CB1 HB11 PFG sing 286 n n CB1 HB12 PFG sing 287 n n CG1 CD1 PFG sing 288 n n CG1 HG11 PFG sing 289 n n CG1 HG12 PFG sing 290 n n CD1 OE1 PFG doub 291 n n CD1 NP2 PFG sing 292 n n CT1 O11 PFG doub 293 n n CT1 O21 PFG sing 294 n n O21 HO21 PFG sing 295 n n NP2 CA2 PFG sing 296 n n NP2 HNP2 PFG sing 297 n n CA2 CB2 PFG sing 298 n n CA2 CT2 PFG sing 299 n n CA2 HA2 PFG sing 300 n n CB2 CG2 PFG sing 301 n n CB2 HB21 PFG sing 302 n n CB2 HB22 PFG sing 303 n n CG2 CD2 PFG sing 304 n n CG2 HG21 PFG sing 305 n n CG2 HG22 PFG sing 306 n n CD2 OE2 PFG doub 307 n n CD2 NP3 PFG sing 308 n n CT2 O12 PFG doub 309 n n CT2 O22 PFG sing 310 n n O22 HO22 PFG sing 311 n n NP3 CA3 PFG sing 312 n n NP3 HNP3 PFG sing 313 n n CA3 CB3 PFG sing 314 n n CA3 CT3 PFG sing 315 n n CA3 HA3 PFG sing 316 n n CB3 CG3 PFG sing 317 n n CB3 HB31 PFG sing 318 n n CB3 HB32 PFG sing 319 n n CG3 CD3 PFG sing 320 n n CG3 HG31 PFG sing 321 n n CG3 HG32 PFG sing 322 n n CD3 OE3 PFG doub 323 n n CD3 NP4 PFG sing 324 n n CT3 O13 PFG doub 325 n n CT3 O23 PFG sing 326 n n O23 HO23 PFG sing 327 n n NP4 CA4 PFG sing 328 n n NP4 HNP4 PFG sing 329 n n CA4 CB4 PFG sing 330 n n CA4 CT4 PFG sing 331 n n CA4 HA4 PFG sing 332 n n CB4 CG4 PFG sing 333 n n CB4 HB41 PFG sing 334 n n CB4 HB42 PFG sing 335 n n CG4 CD4 PFG sing 336 n n CG4 HG41 PFG sing 337 n n CG4 HG42 PFG sing 338 n n CD4 OE4 PFG doub 339 n n CD4 OE PFG sing 340 n n OE HOE PFG sing 341 n n CT4 O14 PFG doub 342 n n CT4 O24 PFG sing 343 n n O24 HO24 PFG sing 344 n n # _atom_sites.entry_id 2BBQ _atom_sites.fract_transf_matrix[1][1] 0.007868 _atom_sites.fract_transf_matrix[1][2] 0.004542 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 529 529 UMP UMP . D 3 PFG A 1 531 531 PFG PFG . E 2 UMP B 1 530 530 UMP UMP . F 3 PFG B 1 532 532 PFG PFG . G 4 HOH A 1 532 2 HOH HOH . G 4 HOH A 2 533 3 HOH HOH . G 4 HOH A 3 534 4 HOH HOH . G 4 HOH A 4 535 5 HOH HOH . G 4 HOH A 5 536 6 HOH HOH . G 4 HOH A 6 537 8 HOH HOH . G 4 HOH A 7 538 9 HOH HOH . G 4 HOH A 8 539 10 HOH HOH . G 4 HOH A 9 540 15 HOH HOH . G 4 HOH A 10 541 16 HOH HOH . G 4 HOH A 11 542 17 HOH HOH . G 4 HOH A 12 543 19 HOH HOH . G 4 HOH A 13 544 20 HOH HOH . G 4 HOH A 14 545 21 HOH HOH . G 4 HOH A 15 546 22 HOH HOH . G 4 HOH A 16 547 23 HOH HOH . G 4 HOH A 17 548 24 HOH HOH . G 4 HOH A 18 549 25 HOH HOH . G 4 HOH A 19 550 26 HOH HOH . G 4 HOH A 20 551 28 HOH HOH . G 4 HOH A 21 552 29 HOH HOH . G 4 HOH A 22 553 30 HOH HOH . G 4 HOH A 23 554 31 HOH HOH . G 4 HOH A 24 555 33 HOH HOH . G 4 HOH A 25 556 35 HOH HOH . G 4 HOH A 26 557 36 HOH HOH . G 4 HOH A 27 558 37 HOH HOH . G 4 HOH A 28 559 38 HOH HOH . G 4 HOH A 29 560 39 HOH HOH . G 4 HOH A 30 561 40 HOH HOH . G 4 HOH A 31 562 41 HOH HOH . G 4 HOH A 32 563 42 HOH HOH . G 4 HOH A 33 564 43 HOH HOH . G 4 HOH A 34 565 44 HOH HOH . G 4 HOH A 35 566 45 HOH HOH . G 4 HOH A 36 567 46 HOH HOH . G 4 HOH A 37 568 47 HOH HOH . G 4 HOH A 38 569 48 HOH HOH . G 4 HOH A 39 570 49 HOH HOH . G 4 HOH A 40 571 50 HOH HOH . G 4 HOH A 41 572 51 HOH HOH . G 4 HOH A 42 573 52 HOH HOH . G 4 HOH A 43 574 53 HOH HOH . G 4 HOH A 44 575 54 HOH HOH . G 4 HOH A 45 576 55 HOH HOH . G 4 HOH A 46 577 57 HOH HOH . G 4 HOH A 47 578 58 HOH HOH . G 4 HOH A 48 579 59 HOH HOH . G 4 HOH A 49 580 61 HOH HOH . G 4 HOH A 50 581 64 HOH HOH . G 4 HOH A 51 582 65 HOH HOH . G 4 HOH A 52 583 66 HOH HOH . G 4 HOH A 53 584 68 HOH HOH . G 4 HOH A 54 585 69 HOH HOH . G 4 HOH A 55 586 74 HOH HOH . G 4 HOH A 56 587 77 HOH HOH . G 4 HOH A 57 588 80 HOH HOH . G 4 HOH A 58 589 81 HOH HOH . G 4 HOH A 59 590 83 HOH HOH . G 4 HOH A 60 591 88 HOH HOH . G 4 HOH A 61 592 90 HOH HOH . G 4 HOH A 62 593 91 HOH HOH . G 4 HOH A 63 594 92 HOH HOH . G 4 HOH A 64 595 93 HOH HOH . G 4 HOH A 65 596 101 HOH HOH . G 4 HOH A 66 597 103 HOH HOH . G 4 HOH A 67 598 104 HOH HOH . H 4 HOH B 1 533 1 HOH HOH . H 4 HOH B 2 534 7 HOH HOH . H 4 HOH B 3 535 11 HOH HOH . H 4 HOH B 4 536 12 HOH HOH . H 4 HOH B 5 537 13 HOH HOH . H 4 HOH B 6 538 14 HOH HOH . H 4 HOH B 7 539 18 HOH HOH . H 4 HOH B 8 540 27 HOH HOH . H 4 HOH B 9 541 32 HOH HOH . H 4 HOH B 10 542 34 HOH HOH . H 4 HOH B 11 543 56 HOH HOH . H 4 HOH B 12 544 60 HOH HOH . H 4 HOH B 13 545 62 HOH HOH . H 4 HOH B 14 546 63 HOH HOH . H 4 HOH B 15 547 67 HOH HOH . H 4 HOH B 16 548 70 HOH HOH . H 4 HOH B 17 549 71 HOH HOH . H 4 HOH B 18 550 72 HOH HOH . H 4 HOH B 19 551 73 HOH HOH . H 4 HOH B 20 552 75 HOH HOH . H 4 HOH B 21 553 76 HOH HOH . H 4 HOH B 22 554 78 HOH HOH . H 4 HOH B 23 555 79 HOH HOH . H 4 HOH B 24 556 82 HOH HOH . H 4 HOH B 25 557 84 HOH HOH . H 4 HOH B 26 558 85 HOH HOH . H 4 HOH B 27 559 86 HOH HOH . H 4 HOH B 28 560 87 HOH HOH . H 4 HOH B 29 561 89 HOH HOH . H 4 HOH B 30 562 94 HOH HOH . H 4 HOH B 31 563 95 HOH HOH . H 4 HOH B 32 564 96 HOH HOH . H 4 HOH B 33 565 97 HOH HOH . H 4 HOH B 34 566 98 HOH HOH . H 4 HOH B 35 567 99 HOH HOH . H 4 HOH B 36 568 100 HOH HOH . H 4 HOH B 37 569 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PFG . . . F 3 48.411 35.005 22.884 1 15.88 ? N1 PFG 532 B 1 HETATM 2 C C2 PFG . . . F 3 48.569 35.249 24.201 1 13.68 ? C2 PFG 532 B 1 HETATM 3 N NA2 PFG . . . F 3 49.511 34.637 24.922 1 15.28 ? NA2 PFG 532 B 1 HETATM 4 N N3 PFG . . . F 3 47.793 36.111 24.834 1 11.13 ? N3 PFG 532 B 1 HETATM 5 C C4 PFG . . . F 3 46.861 36.787 24.186 1 9.65 ? C4 PFG 532 B 1 HETATM 6 O O4 PFG . . . F 3 46.176 37.742 24.885 1 13.52 ? O4 PFG 532 B 1 HETATM 7 C C4A PFG . . . F 3 46.633 36.578 22.829 1 14.12 ? C4A PFG 532 B 1 HETATM 8 C C5 PFG . . . F 3 45.636 37.268 22.13 1 10.75 ? C5 PFG 532 B 1 HETATM 9 C C6 PFG . . . F 3 45.463 37.062 20.761 1 12.94 ? C6 PFG 532 B 1 HETATM 10 C C7 PFG . . . F 3 46.249 36.099 20.126 1 14.88 ? C7 PFG 532 B 1 HETATM 11 C C8 PFG . . . F 3 47.208 35.384 20.839 1 14.09 ? C8 PFG 532 B 1 HETATM 12 C C8A PFG . . . F 3 47.427 35.631 22.195 1 14.25 ? C8A PFG 532 B 1 HETATM 13 C C9 PFG . . . F 3 44.768 38.053 19.901 1 8.57 ? C9 PFG 532 B 1 HETATM 14 N N10 PFG . . . F 3 44.502 39.356 20.532 1 14.94 ? N10 PFG 532 B 1 HETATM 15 C CP1 PFG . . . F 3 43.074 39.61 20.612 1 13.69 ? CP1 PFG 532 B 1 HETATM 16 C CP2 PFG . . . F 3 42.625 39.176 21.945 1 11.93 ? CP2 PFG 532 B 1 HETATM 17 C CP3 PFG . . . F 3 42.272 38.907 23.059 1 5.14 ? CP3 PFG 532 B 1 HETATM 18 C C11 PFG . . . F 3 47.462 41.868 22.011 1 19.86 ? C11 PFG 532 B 1 HETATM 19 C C12 PFG . . . F 3 46.175 41.959 22.513 1 17.76 ? C12 PFG 532 B 1 HETATM 20 C C13 PFG . . . F 3 45.161 41.119 22.049 1 15.36 ? C13 PFG 532 B 1 HETATM 21 C C14 PFG . . . F 3 45.452 40.178 21.067 1 16.81 ? C14 PFG 532 B 1 HETATM 22 C C15 PFG . . . F 3 46.769 40.099 20.586 1 21.11 ? C15 PFG 532 B 1 HETATM 23 C C16 PFG . . . F 3 47.756 40.926 21.062 1 20.46 ? C16 PFG 532 B 1 HETATM 24 C C PFG . . . F 3 48.504 42.823 22.343 1 23.35 ? C PFG 532 B 1 HETATM 25 O O PFG . . . F 3 49.676 42.616 22.025 1 23.02 ? O PFG 532 B 1 HETATM 26 N NP1 PFG . . . F 3 48.161 43.973 22.968 1 27.46 ? NP1 PFG 532 B 1 HETATM 27 C CA1 PFG . . . F 3 49.125 45.03 23.382 1 28.39 ? CA1 PFG 532 B 1 HETATM 28 C CB1 PFG . . . F 3 49.481 45.975 22.22 1 27.28 ? CB1 PFG 532 B 1 HETATM 29 C CG1 PFG . . . F 3 48.33 46.603 21.484 1 31.38 ? CG1 PFG 532 B 1 HETATM 30 C CD1 PFG . . . F 3 48.814 47.15 20.161 1 35.15 ? CD1 PFG 532 B 1 HETATM 31 O OE1 PFG . . . F 3 48.721 46.472 19.135 1 36.98 ? OE1 PFG 532 B 1 HETATM 32 C CT1 PFG . . . F 3 48.514 45.852 24.497 1 29.06 ? CT1 PFG 532 B 1 HETATM 33 O O11 PFG . . . F 3 49.272 46.397 25.284 1 31.47 ? O11 PFG 532 B 1 HETATM 34 O O21 PFG . . . F 3 47.295 45.906 24.623 1 29.23 ? O21 PFG 532 B 1 HETATM 35 N NP2 PFG . . . F 3 48.561 48.451 20.09 1 40.9 ? NP2 PFG 532 B 1 HETATM 36 C CA2 PFG . . . F 3 49.256 49.336 19.115 1 45.29 ? CA2 PFG 532 B 1 HETATM 37 C CB2 PFG . . . F 3 49.413 50.66 19.821 1 45.93 ? CB2 PFG 532 B 1 HETATM 38 C CG2 PFG . . . F 3 49.258 51.873 18.959 1 47.29 ? CG2 PFG 532 B 1 HETATM 39 C CD2 PFG . . . F 3 49.5 53.11 19.809 1 48.07 ? CD2 PFG 532 B 1 HETATM 40 O OE2 PFG . . . F 3 50.635 53.54 20.027 1 48.14 ? OE2 PFG 532 B 1 HETATM 41 C CT2 PFG . . . F 3 50.601 48.807 18.579 1 47.53 ? CT2 PFG 532 B 1 HETATM 42 O O12 PFG . . . F 3 51.461 48.412 19.389 1 46.65 ? O12 PFG 532 B 1 HETATM 43 O O22 PFG . . . F 3 50.741 48.754 17.349 1 48.55 ? O22 PFG 532 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #