data_2BBT # _model_server_result.job_id ve_03t_kslJJcZDVnm0MgA _model_server_result.datetime_utc '2024-11-13 18:17:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 2BBT # _exptl.entry_id 2BBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BBT _cell.length_a 65.405 _cell.length_b 65.686 _cell.length_c 132.777 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 D O2B ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 C MG MG . A MG 3 1_555 G O HOH . A HOH 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc4 C MG MG . A MG 3 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 C MG MG . A MG 3 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc6 F O2G ATP . B ATP 2 1_555 E MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc7 F O2B ATP . B ATP 2 1_555 E MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 E MG MG . B MG 4 1_555 H O HOH . B HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 E MG MG . B MG 4 1_555 B OG1 THR 78 B THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 E MG MG . B MG 4 1_555 B OE1 GLN 106 B GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2BBT _atom_sites.fract_transf_matrix[1][1] 0.015289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 3 3 MG MG . D 3 ATP A 1 1 1 ATP ATP . E 2 MG B 1 4 4 MG MG . F 3 ATP B 1 2 2 ATP ATP . G 4 HOH A 1 7 7 HOH HOH . G 4 HOH A 2 8 8 HOH HOH . G 4 HOH A 3 13 13 HOH HOH . G 4 HOH A 4 14 14 HOH HOH . G 4 HOH A 5 17 17 HOH HOH . G 4 HOH A 6 18 18 HOH HOH . G 4 HOH A 7 20 20 HOH HOH . G 4 HOH A 8 21 21 HOH HOH . G 4 HOH A 9 24 24 HOH HOH . G 4 HOH A 10 27 27 HOH HOH . G 4 HOH A 11 30 30 HOH HOH . G 4 HOH A 12 31 31 HOH HOH . G 4 HOH A 13 32 32 HOH HOH . G 4 HOH A 14 33 33 HOH HOH . G 4 HOH A 15 34 34 HOH HOH . G 4 HOH A 16 35 35 HOH HOH . G 4 HOH A 17 37 37 HOH HOH . G 4 HOH A 18 38 38 HOH HOH . G 4 HOH A 19 40 40 HOH HOH . G 4 HOH A 20 41 41 HOH HOH . G 4 HOH A 21 42 42 HOH HOH . G 4 HOH A 22 43 43 HOH HOH . G 4 HOH A 23 44 44 HOH HOH . G 4 HOH A 24 47 47 HOH HOH . G 4 HOH A 25 48 48 HOH HOH . G 4 HOH A 26 49 49 HOH HOH . G 4 HOH A 27 52 52 HOH HOH . G 4 HOH A 28 53 53 HOH HOH . G 4 HOH A 29 55 55 HOH HOH . G 4 HOH A 30 58 58 HOH HOH . G 4 HOH A 31 59 59 HOH HOH . G 4 HOH A 32 60 60 HOH HOH . G 4 HOH A 33 65 65 HOH HOH . G 4 HOH A 34 66 66 HOH HOH . G 4 HOH A 35 67 67 HOH HOH . G 4 HOH A 36 71 71 HOH HOH . G 4 HOH A 37 72 72 HOH HOH . G 4 HOH A 38 76 76 HOH HOH . G 4 HOH A 39 77 77 HOH HOH . G 4 HOH A 40 78 78 HOH HOH . G 4 HOH A 41 80 80 HOH HOH . G 4 HOH A 42 82 82 HOH HOH . G 4 HOH A 43 88 88 HOH HOH . G 4 HOH A 44 89 89 HOH HOH . G 4 HOH A 45 93 93 HOH HOH . G 4 HOH A 46 94 94 HOH HOH . G 4 HOH A 47 95 95 HOH HOH . G 4 HOH A 48 97 97 HOH HOH . G 4 HOH A 49 99 99 HOH HOH . G 4 HOH A 50 100 100 HOH HOH . G 4 HOH A 51 101 101 HOH HOH . G 4 HOH A 52 102 102 HOH HOH . G 4 HOH A 53 104 104 HOH HOH . G 4 HOH A 54 106 106 HOH HOH . G 4 HOH A 55 107 107 HOH HOH . G 4 HOH A 56 109 109 HOH HOH . G 4 HOH A 57 112 112 HOH HOH . G 4 HOH A 58 117 117 HOH HOH . G 4 HOH A 59 118 118 HOH HOH . G 4 HOH A 60 120 120 HOH HOH . G 4 HOH A 61 123 123 HOH HOH . G 4 HOH A 62 124 124 HOH HOH . G 4 HOH A 63 125 125 HOH HOH . G 4 HOH A 64 127 127 HOH HOH . G 4 HOH A 65 129 129 HOH HOH . G 4 HOH A 66 130 130 HOH HOH . G 4 HOH A 67 131 131 HOH HOH . G 4 HOH A 68 132 132 HOH HOH . G 4 HOH A 69 133 133 HOH HOH . H 4 HOH B 1 5 5 HOH HOH . H 4 HOH B 2 6 6 HOH HOH . H 4 HOH B 3 9 9 HOH HOH . H 4 HOH B 4 10 10 HOH HOH . H 4 HOH B 5 11 11 HOH HOH . H 4 HOH B 6 12 12 HOH HOH . H 4 HOH B 7 15 15 HOH HOH . H 4 HOH B 8 16 16 HOH HOH . H 4 HOH B 9 19 19 HOH HOH . H 4 HOH B 10 22 22 HOH HOH . H 4 HOH B 11 23 23 HOH HOH . H 4 HOH B 12 25 25 HOH HOH . H 4 HOH B 13 26 26 HOH HOH . H 4 HOH B 14 28 28 HOH HOH . H 4 HOH B 15 29 29 HOH HOH . H 4 HOH B 16 36 36 HOH HOH . H 4 HOH B 17 39 39 HOH HOH . H 4 HOH B 18 45 45 HOH HOH . H 4 HOH B 19 46 46 HOH HOH . H 4 HOH B 20 50 50 HOH HOH . H 4 HOH B 21 51 51 HOH HOH . H 4 HOH B 22 54 54 HOH HOH . H 4 HOH B 23 56 56 HOH HOH . H 4 HOH B 24 57 57 HOH HOH . H 4 HOH B 25 61 61 HOH HOH . H 4 HOH B 26 62 62 HOH HOH . H 4 HOH B 27 63 63 HOH HOH . H 4 HOH B 28 64 64 HOH HOH . H 4 HOH B 29 68 68 HOH HOH . H 4 HOH B 30 69 69 HOH HOH . H 4 HOH B 31 70 70 HOH HOH . H 4 HOH B 32 73 73 HOH HOH . H 4 HOH B 33 74 74 HOH HOH . H 4 HOH B 34 75 75 HOH HOH . H 4 HOH B 35 79 79 HOH HOH . H 4 HOH B 36 81 81 HOH HOH . H 4 HOH B 37 83 83 HOH HOH . H 4 HOH B 38 84 84 HOH HOH . H 4 HOH B 39 85 85 HOH HOH . H 4 HOH B 40 86 86 HOH HOH . H 4 HOH B 41 87 87 HOH HOH . H 4 HOH B 42 90 90 HOH HOH . H 4 HOH B 43 91 91 HOH HOH . H 4 HOH B 44 92 92 HOH HOH . H 4 HOH B 45 96 96 HOH HOH . H 4 HOH B 46 98 98 HOH HOH . H 4 HOH B 47 103 103 HOH HOH . H 4 HOH B 48 105 105 HOH HOH . H 4 HOH B 49 108 108 HOH HOH . H 4 HOH B 50 110 110 HOH HOH . H 4 HOH B 51 111 111 HOH HOH . H 4 HOH B 52 113 113 HOH HOH . H 4 HOH B 53 114 114 HOH HOH . H 4 HOH B 54 115 115 HOH HOH . H 4 HOH B 55 116 116 HOH HOH . H 4 HOH B 56 119 119 HOH HOH . H 4 HOH B 57 121 121 HOH HOH . H 4 HOH B 58 122 122 HOH HOH . H 4 HOH B 59 126 126 HOH HOH . H 4 HOH B 60 128 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 20.793 31.448 100.394 1 35.47 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . D 3 20.218 32.412 101.394 1 36.6 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . D 3 20.538 29.994 100.693 1 35.29 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . D 3 20.568 31.815 98.95 1 42.25 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . D 3 23.259 31.207 101.807 1 28.73 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . D 3 23.062 32.247 102.876 1 30.76 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . D 3 23.03 29.758 102.148 1 29.89 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . D 3 22.389 31.646 100.525 1 37.07 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . D 3 25.72 30.202 100.72 1 33.35 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . D 3 24.97 29.201 99.892 1 39.18 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . D 3 26.514 29.709 101.905 1 37 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . D 3 24.742 31.394 101.196 1 33.83 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . D 3 26.735 30.984 99.747 1 35.57 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . D 3 27.492 32.118 100.17 1 33.24 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . D 3 28.544 32.443 99.107 1 37.46 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . D 3 29.46 31.351 98.957 1 35.12 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . D 3 27.936 32.671 97.727 1 37.58 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . D 3 28.686 33.695 97.067 1 36.1 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . D 3 28.127 31.351 97.008 1 35.72 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . D 3 28.191 31.506 95.584 1 35.7 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . D 3 29.435 30.856 97.614 1 33.29 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . D 3 29.536 29.378 97.628 1 31.59 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . D 3 28.617 28.518 98.119 1 30.61 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . D 3 29.029 27.236 97.975 1 33.36 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . D 3 30.241 27.269 97.377 1 31.31 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . D 3 31.243 26.273 96.934 1 31.46 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . D 3 31.018 24.949 97.107 1 33.21 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . D 3 32.383 26.727 96.352 1 32.3 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . D 3 32.62 28.042 96.171 1 31.51 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . D 3 31.755 29.003 96.556 1 32.43 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . D 3 30.572 28.685 97.152 1 31.2 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #