data_2BC9 # _model_server_result.job_id WQycQVGEj2TgXgESJ_6AuQ _model_server_result.datetime_utc '2024-10-12 17:17:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":593}' # _entry.id 2BC9 # _exptl.entry_id 2BC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BC9 _cell.length_a 54.884 _cell.length_b 101.104 _cell.length_c 149.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 0 74.6305 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 63 A SER 52 1_555 B MG MG . A MG 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A OG1 THR 86 A THR 75 1_555 B MG MG . A MG 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 C O2G GNP . A GNP 593 1_555 B MG MG . A MG 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 C O2B GNP . A GNP 593 1_555 B MG MG . A MG 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 B MG MG . A MG 595 1_555 D O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 B MG MG . A MG 595 1_555 D O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 2BC9 _atom_sites.fract_transf_matrix[1][1] 0.01822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 595 595 MG MG . C 3 GNP A 1 593 593 GNP GNP . D 4 HOH A 1 596 1 HOH HOH . D 4 HOH A 2 597 2 HOH HOH . D 4 HOH A 3 598 3 HOH HOH . D 4 HOH A 4 599 4 HOH HOH . D 4 HOH A 5 600 5 HOH HOH . D 4 HOH A 6 601 6 HOH HOH . D 4 HOH A 7 602 7 HOH HOH . D 4 HOH A 8 603 8 HOH HOH . D 4 HOH A 9 604 9 HOH HOH . D 4 HOH A 10 605 10 HOH HOH . D 4 HOH A 11 606 11 HOH HOH . D 4 HOH A 12 607 12 HOH HOH . D 4 HOH A 13 608 13 HOH HOH . D 4 HOH A 14 609 14 HOH HOH . D 4 HOH A 15 610 15 HOH HOH . D 4 HOH A 16 611 16 HOH HOH . D 4 HOH A 17 612 17 HOH HOH . D 4 HOH A 18 613 18 HOH HOH . D 4 HOH A 19 614 19 HOH HOH . D 4 HOH A 20 615 20 HOH HOH . D 4 HOH A 21 616 21 HOH HOH . D 4 HOH A 22 617 22 HOH HOH . D 4 HOH A 23 618 23 HOH HOH . D 4 HOH A 24 619 24 HOH HOH . D 4 HOH A 25 620 25 HOH HOH . D 4 HOH A 26 621 26 HOH HOH . D 4 HOH A 27 622 27 HOH HOH . D 4 HOH A 28 623 28 HOH HOH . D 4 HOH A 29 624 29 HOH HOH . D 4 HOH A 30 625 30 HOH HOH . D 4 HOH A 31 626 31 HOH HOH . D 4 HOH A 32 627 32 HOH HOH . D 4 HOH A 33 628 33 HOH HOH . D 4 HOH A 34 629 34 HOH HOH . D 4 HOH A 35 630 35 HOH HOH . D 4 HOH A 36 631 36 HOH HOH . D 4 HOH A 37 632 37 HOH HOH . D 4 HOH A 38 633 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 4.756 12.358 42.554 1 46.08 ? PG GNP 593 A 1 HETATM 2 O O1G GNP . . . C 3 5.205 12.966 41.282 1 44.61 ? O1G GNP 593 A 1 HETATM 3 O O2G GNP . . . C 3 4.801 13.436 43.747 1 40.69 ? O2G GNP 593 A 1 HETATM 4 O O3G GNP . . . C 3 5.728 11.156 43.004 1 44.63 ? O3G GNP 593 A 1 HETATM 5 N N3B GNP . . . C 3 3.241 11.778 42.462 1 44.72 ? N3B GNP 593 A 1 HETATM 6 P PB GNP . . . C 3 2.768 10.9 43.744 1 46.23 ? PB GNP 593 A 1 HETATM 7 O O1B GNP . . . C 3 3.546 9.641 43.775 1 45.19 ? O1B GNP 593 A 1 HETATM 8 O O2B GNP . . . C 3 2.77 11.749 44.956 1 46.54 ? O2B GNP 593 A 1 HETATM 9 O O3A GNP . . . C 3 1.245 10.536 43.371 1 47.2 ? O3A GNP 593 A 1 HETATM 10 P PA GNP . . . C 3 0.022 11.493 43.796 1 47.14 ? PA GNP 593 A 1 HETATM 11 O O1A GNP . . . C 3 -0.394 11.121 45.167 1 45.77 ? O1A GNP 593 A 1 HETATM 12 O O2A GNP . . . C 3 0.406 12.898 43.539 1 49.55 ? O2A GNP 593 A 1 HETATM 13 O O5' GNP . . . C 3 -1.114 11.07 42.739 1 46.87 ? O5' GNP 593 A 1 HETATM 14 C C5' GNP . . . C 3 -0.982 11.485 41.378 1 47.8 ? C5' GNP 593 A 1 HETATM 15 C C4' GNP . . . C 3 -2.282 11.272 40.598 1 48.74 ? C4' GNP 593 A 1 HETATM 16 O O4' GNP . . . C 3 -2.645 9.886 40.722 1 48.38 ? O4' GNP 593 A 1 HETATM 17 C C3' GNP . . . C 3 -3.436 12.068 41.212 1 48.99 ? C3' GNP 593 A 1 HETATM 18 O O3' GNP . . . C 3 -4.473 12.27 40.249 1 51.77 ? O3' GNP 593 A 1 HETATM 19 C C2' GNP . . . C 3 -3.905 11.103 42.298 1 47.33 ? C2' GNP 593 A 1 HETATM 20 O O2' GNP . . . C 3 -5.27 11.384 42.622 1 48.41 ? O2' GNP 593 A 1 HETATM 21 C C1' GNP . . . C 3 -3.84 9.792 41.514 1 46.16 ? C1' GNP 593 A 1 HETATM 22 N N9 GNP . . . C 3 -3.746 8.609 42.398 1 45.71 ? N9 GNP 593 A 1 HETATM 23 C C8 GNP . . . C 3 -3.628 8.618 43.721 1 46.02 ? C8 GNP 593 A 1 HETATM 24 N N7 GNP . . . C 3 -3.519 7.374 44.175 1 46.79 ? N7 GNP 593 A 1 HETATM 25 C C5 GNP . . . C 3 -3.574 6.552 43.121 1 43.76 ? C5 GNP 593 A 1 HETATM 26 C C6 GNP . . . C 3 -3.535 5.176 42.998 1 42.49 ? C6 GNP 593 A 1 HETATM 27 O O6 GNP . . . C 3 -3.41 4.453 43.987 1 44.01 ? O6 GNP 593 A 1 HETATM 28 N N1 GNP . . . C 3 -3.648 4.609 41.719 1 41.64 ? N1 GNP 593 A 1 HETATM 29 C C2 GNP . . . C 3 -3.798 5.448 40.611 1 40.87 ? C2 GNP 593 A 1 HETATM 30 N N2 GNP . . . C 3 -3.961 4.912 39.404 1 42.03 ? N2 GNP 593 A 1 HETATM 31 N N3 GNP . . . C 3 -3.823 6.781 40.773 1 40.29 ? N3 GNP 593 A 1 HETATM 32 C C4 GNP . . . C 3 -3.719 7.338 41.986 1 43.29 ? C4 GNP 593 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #