data_2BCC # _model_server_result.job_id UssV72sBwlEdIiVIrwYfKA _model_server_result.datetime_utc '2024-11-23 05:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":242}' # _entry.id 2BCC # _exptl.entry_id 2BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 15 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BCC _cell.length_a 173.46 _cell.length_b 182.45 _cell.length_c 241.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 Q CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 Q CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 Q FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 Q FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 R FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 R FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 R FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 R FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2BCC _atom_sites.fract_transf_matrix[1][1] 0.005765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 SIG C 1 385 9 SIG SIG . P 15 BOG D 1 242 8 BOG BOG . Q 11 HEM D 1 243 3 HEM HEM . R 16 FES E 1 197 4 FES FES . S 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . P 15 32.059 139.212 55.866 1 68.15 ? C1 BOG 242 D 1 HETATM 2 O O1 BOG . . . P 15 32.258 137.84 55.649 1 61.48 ? O1 BOG 242 D 1 HETATM 3 C C2 BOG . . . P 15 33.415 139.918 56.221 1 70.82 ? C2 BOG 242 D 1 HETATM 4 O O2 BOG . . . P 15 34.004 139.345 57.398 1 70.54 ? O2 BOG 242 D 1 HETATM 5 C C3 BOG . . . P 15 33.165 141.434 56.43 1 73.78 ? C3 BOG 242 D 1 HETATM 6 O O3 BOG . . . P 15 34.38 142.099 56.756 1 81.37 ? O3 BOG 242 D 1 HETATM 7 C C4 BOG . . . P 15 32.539 142.037 55.137 1 73.62 ? C4 BOG 242 D 1 HETATM 8 O O4 BOG . . . P 15 32.297 143.463 55.292 1 70.55 ? O4 BOG 242 D 1 HETATM 9 C C5 BOG . . . P 15 31.201 141.268 54.802 1 74.69 ? C5 BOG 242 D 1 HETATM 10 O O5 BOG . . . P 15 31.444 139.81 54.664 1 69.67 ? O5 BOG 242 D 1 HETATM 11 C C6 BOG . . . P 15 30.524 141.771 53.501 1 78.26 ? C6 BOG 242 D 1 HETATM 12 O O6 BOG . . . P 15 31.433 141.902 52.406 1 81.34 ? O6 BOG 242 D 1 HETATM 13 C C1' BOG . . . P 15 31.49 136.892 56.43 1 54.29 ? C1' BOG 242 D 1 HETATM 14 C C2' BOG . . . P 15 31.444 135.576 55.679 1 48.5 ? C2' BOG 242 D 1 HETATM 15 C C3' BOG . . . P 15 31.054 134.426 56.571 1 47.63 ? C3' BOG 242 D 1 HETATM 16 C C4' BOG . . . P 15 31.612 133.141 55.977 1 41.41 ? C4' BOG 242 D 1 HETATM 17 C C5' BOG . . . P 15 30.549 132.066 55.804 1 35.73 ? C5' BOG 242 D 1 HETATM 18 C C6' BOG . . . P 15 30.539 131.102 56.98 1 37.09 ? C6' BOG 242 D 1 HETATM 19 C C7' BOG . . . P 15 29.976 129.77 56.546 1 37.78 ? C7' BOG 242 D 1 HETATM 20 C C8' BOG . . . P 15 29.994 128.873 57.734 1 35.5 ? C8' BOG 242 D 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #