data_2BCD
#
_model_server_result.job_id            InWIcK_PNoBUjtxX24io0g 
_model_server_result.datetime_utc      '2024-10-18 17:29:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bcd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":604}' 
#
_entry.id    2BCD 
#
_exptl.entry_id    2BCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BCD 
_cell.length_a            100.955 
_cell.length_b            100.955 
_cell.length_c            63.485 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 127 A CYS 127 1_555 C S2 BME . A BME 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
covale ? covale2 A SG CYS 202 A CYS 202 1_555 D S2 BME . A BME 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale3 B CG ACB 1 B ACB 1 1_555 B N VAL 2 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale4 B N ACB 1 B ACB 1 1_555 B C MDH 5 B MDH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale5 B C VAL 2 B VAL 2 1_555 B N 1ZN 3 B 1ZN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C 1ZN 3 B 1ZN 3 1_555 B N FGA 4 B FGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B CD FGA 4 B FGA 4 1_555 B N MDH 5 B MDH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
metalc ? metalc1 A OD2 ASP 64 A ASP 64 1_555 F MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 F MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 A OD2 ASP 92 A ASP 92 1_555 E MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc4 A OD2 ASP 92 A ASP 92 1_555 F MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc5 A OD1 ASN 124 A ASN 124 1_555 E MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc6 A NE2 HIS 173 A HIS 173 1_555 E MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc7 A ND1 HIS 248 A HIS 248 1_555 E MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc8 F MN MN . A MN 401 1_555 M O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 141 n n 
C1 O1 BME sing 142 n n 
C1 H11 BME sing 143 n n 
C1 H12 BME sing 144 n n 
C2 S2 BME sing 145 n n 
C2 H21 BME sing 146 n n 
C2 H22 BME sing 147 n n 
O1 HO1 BME sing 148 n n 
S2 HS2 BME sing 149 n n 
#
_atom_sites.entry_id                     2BCD 
_atom_sites.fract_transf_matrix[1][1]    0.00991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00991 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BME A 1 604 604 BME BME . 
D 3 BME A 1 605 605 BME BME . 
E 4 MN A 1 400 400 MN MN . 
F 4 MN A 1 401 401 MN MN . 
G 4 MN A 1 402 402 MN MN . 
H 4 MN A 1 403 403 MN MN . 
I 4 MN A 1 404 404 MN MN . 
J 4 MN A 1 405 405 MN MN . 
K 4 MN A 1 406 406 MN MN . 
L 4 MN A 1 407 407 MN MN . 
M 5 HOH A 1 606 606 HOH HOH . 
M 5 HOH A 2 607 607 HOH HOH . 
M 5 HOH A 3 608 608 HOH HOH . 
M 5 HOH A 4 609 609 HOH HOH . 
M 5 HOH A 5 610 610 HOH HOH . 
M 5 HOH A 6 611 611 HOH HOH . 
M 5 HOH A 7 612 612 HOH HOH . 
M 5 HOH A 8 613 613 HOH HOH . 
M 5 HOH A 9 614 614 HOH HOH . 
M 5 HOH A 10 615 615 HOH HOH . 
M 5 HOH A 11 616 616 HOH HOH . 
M 5 HOH A 12 617 617 HOH HOH . 
M 5 HOH A 13 618 618 HOH HOH . 
M 5 HOH A 14 619 619 HOH HOH . 
M 5 HOH A 15 620 620 HOH HOH . 
M 5 HOH A 16 621 621 HOH HOH . 
M 5 HOH A 17 622 622 HOH HOH . 
M 5 HOH A 18 623 623 HOH HOH . 
M 5 HOH A 19 624 624 HOH HOH . 
M 5 HOH A 20 625 625 HOH HOH . 
M 5 HOH A 21 626 626 HOH HOH . 
M 5 HOH A 22 627 627 HOH HOH . 
M 5 HOH A 23 628 628 HOH HOH . 
M 5 HOH A 24 629 629 HOH HOH . 
M 5 HOH A 25 630 630 HOH HOH . 
M 5 HOH A 26 631 631 HOH HOH . 
M 5 HOH A 27 632 632 HOH HOH . 
M 5 HOH A 28 633 633 HOH HOH . 
M 5 HOH A 29 634 634 HOH HOH . 
M 5 HOH A 30 635 635 HOH HOH . 
M 5 HOH A 31 636 636 HOH HOH . 
M 5 HOH A 32 637 637 HOH HOH . 
M 5 HOH A 33 638 638 HOH HOH . 
M 5 HOH A 34 639 639 HOH HOH . 
M 5 HOH A 35 640 640 HOH HOH . 
M 5 HOH A 36 641 641 HOH HOH . 
M 5 HOH A 37 642 642 HOH HOH . 
M 5 HOH A 38 643 643 HOH HOH . 
M 5 HOH A 39 644 644 HOH HOH . 
M 5 HOH A 40 645 645 HOH HOH . 
M 5 HOH A 41 646 646 HOH HOH . 
M 5 HOH A 42 647 647 HOH HOH . 
M 5 HOH A 43 648 648 HOH HOH . 
M 5 HOH A 44 649 649 HOH HOH . 
M 5 HOH A 45 650 650 HOH HOH . 
M 5 HOH A 46 651 651 HOH HOH . 
M 5 HOH A 47 652 652 HOH HOH . 
M 5 HOH A 48 653 653 HOH HOH . 
M 5 HOH A 49 654 654 HOH HOH . 
M 5 HOH A 50 655 655 HOH HOH . 
M 5 HOH A 51 656 656 HOH HOH . 
M 5 HOH A 52 657 657 HOH HOH . 
M 5 HOH A 53 658 658 HOH HOH . 
M 5 HOH A 54 659 659 HOH HOH . 
M 5 HOH A 55 660 660 HOH HOH . 
M 5 HOH A 56 661 661 HOH HOH . 
M 5 HOH A 57 662 662 HOH HOH . 
M 5 HOH A 58 663 663 HOH HOH . 
M 5 HOH A 59 664 664 HOH HOH . 
M 5 HOH A 60 665 665 HOH HOH . 
M 5 HOH A 61 666 666 HOH HOH . 
M 5 HOH A 62 667 667 HOH HOH . 
M 5 HOH A 63 668 668 HOH HOH . 
M 5 HOH A 64 669 669 HOH HOH . 
M 5 HOH A 65 670 670 HOH HOH . 
M 5 HOH A 66 671 671 HOH HOH . 
M 5 HOH A 67 672 672 HOH HOH . 
M 5 HOH A 68 673 673 HOH HOH . 
M 5 HOH A 69 674 674 HOH HOH . 
M 5 HOH A 70 675 675 HOH HOH . 
M 5 HOH A 71 676 676 HOH HOH . 
M 5 HOH A 72 677 677 HOH HOH . 
M 5 HOH A 73 678 678 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . C 3 87.098 42.636 18.607 1 37.14 ? C1 BME 604 A 1 
HETATM 2 C C2 BME . . . C 3 86.358 43.248 17.302 1 34.59 ? C2 BME 604 A 1 
HETATM 3 O O1 BME . . . C 3 88.428 43.3 18.384 1 38.24 ? O1 BME 604 A 1 
HETATM 4 S S2 BME . . . C 3 84.887 42.191 17.374 1 35 ? S2 BME 604 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#