data_2BD4 # _model_server_result.job_id CmTDjiF1gEOhuHu87imb0Q _model_server_result.datetime_utc '2024-12-02 23:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":260}' # _entry.id 2BD4 # _exptl.entry_id 2BD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BD4 _cell.length_a 50.227 _cell.length_b 57.935 _cell.length_c 74.774 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 30 A CYS 42 1_555 B SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 127 A CYS 136 1_555 B SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 158 A CYS 168 1_555 B SG CYS 174 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 B SG CYS 184 A CYS 191 1_555 B SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A C ILE 7 P ILE 7 1_555 A N LYS 8 P LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? metalc ? metalc1 B OE1 GLU 59 A GLU 70 1_555 C CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 B O ASN 61 A ASN 72 1_555 C CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 B O GLN 64 A GLN 75 1_555 C CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 B ND2 ASN 66 A ASN 77 1_555 C CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 B OE1 GLU 69 A GLU 80 1_555 C CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BD4 _atom_sites.fract_transf_matrix[1][1] 0.01991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 260 260 CA CA . D 4 SO4 A 1 270 270 SO4 SO4 . E 5 HOH A 1 271 1 HOH HOH . E 5 HOH A 2 272 2 HOH HOH . E 5 HOH A 3 273 3 HOH HOH . E 5 HOH A 4 274 4 HOH HOH . E 5 HOH A 5 275 5 HOH HOH . E 5 HOH A 6 276 6 HOH HOH . E 5 HOH A 7 277 7 HOH HOH . E 5 HOH A 8 278 8 HOH HOH . E 5 HOH A 9 279 9 HOH HOH . E 5 HOH A 10 280 10 HOH HOH . E 5 HOH A 11 281 11 HOH HOH . E 5 HOH A 12 282 12 HOH HOH . E 5 HOH A 13 283 13 HOH HOH . E 5 HOH A 14 284 14 HOH HOH . E 5 HOH A 15 285 15 HOH HOH . E 5 HOH A 16 286 16 HOH HOH . E 5 HOH A 17 287 17 HOH HOH . E 5 HOH A 18 288 18 HOH HOH . E 5 HOH A 19 289 19 HOH HOH . E 5 HOH A 20 290 20 HOH HOH . E 5 HOH A 21 291 21 HOH HOH . E 5 HOH A 22 292 22 HOH HOH . E 5 HOH A 23 293 23 HOH HOH . E 5 HOH A 24 294 24 HOH HOH . E 5 HOH A 25 295 25 HOH HOH . E 5 HOH A 26 296 26 HOH HOH . E 5 HOH A 27 297 27 HOH HOH . E 5 HOH A 28 298 28 HOH HOH . E 5 HOH A 29 299 29 HOH HOH . E 5 HOH A 30 300 30 HOH HOH . E 5 HOH A 31 301 31 HOH HOH . E 5 HOH A 32 302 32 HOH HOH . E 5 HOH A 33 303 33 HOH HOH . E 5 HOH A 34 304 34 HOH HOH . E 5 HOH A 35 305 35 HOH HOH . E 5 HOH A 36 306 36 HOH HOH . E 5 HOH A 37 307 37 HOH HOH . E 5 HOH A 38 308 38 HOH HOH . E 5 HOH A 39 309 39 HOH HOH . E 5 HOH A 40 310 40 HOH HOH . E 5 HOH A 41 311 41 HOH HOH . E 5 HOH A 42 312 42 HOH HOH . E 5 HOH A 43 313 43 HOH HOH . E 5 HOH A 44 314 44 HOH HOH . E 5 HOH A 45 315 45 HOH HOH . E 5 HOH A 46 316 46 HOH HOH . E 5 HOH A 47 317 47 HOH HOH . E 5 HOH A 48 318 48 HOH HOH . E 5 HOH A 49 319 49 HOH HOH . E 5 HOH A 50 320 50 HOH HOH . E 5 HOH A 51 321 51 HOH HOH . E 5 HOH A 52 322 52 HOH HOH . E 5 HOH A 53 323 53 HOH HOH . E 5 HOH A 54 324 54 HOH HOH . E 5 HOH A 55 325 55 HOH HOH . E 5 HOH A 56 326 56 HOH HOH . E 5 HOH A 57 327 57 HOH HOH . E 5 HOH A 58 328 58 HOH HOH . E 5 HOH A 59 329 59 HOH HOH . E 5 HOH A 60 330 60 HOH HOH . E 5 HOH A 61 331 61 HOH HOH . E 5 HOH A 62 332 62 HOH HOH . E 5 HOH A 63 333 63 HOH HOH . E 5 HOH A 64 334 64 HOH HOH . E 5 HOH A 65 335 65 HOH HOH . E 5 HOH A 66 336 66 HOH HOH . E 5 HOH A 67 337 67 HOH HOH . E 5 HOH A 68 338 68 HOH HOH . E 5 HOH A 69 339 69 HOH HOH . E 5 HOH A 70 340 70 HOH HOH . E 5 HOH A 71 341 71 HOH HOH . E 5 HOH A 72 342 72 HOH HOH . E 5 HOH A 73 343 73 HOH HOH . E 5 HOH A 74 344 74 HOH HOH . E 5 HOH A 75 345 75 HOH HOH . E 5 HOH A 76 346 76 HOH HOH . E 5 HOH A 77 347 77 HOH HOH . E 5 HOH A 78 348 78 HOH HOH . E 5 HOH A 79 349 79 HOH HOH . E 5 HOH A 80 350 80 HOH HOH . E 5 HOH A 81 351 81 HOH HOH . E 5 HOH A 82 352 82 HOH HOH . E 5 HOH A 83 353 83 HOH HOH . E 5 HOH A 84 354 84 HOH HOH . E 5 HOH A 85 355 85 HOH HOH . E 5 HOH A 86 356 86 HOH HOH . E 5 HOH A 87 357 87 HOH HOH . E 5 HOH A 88 358 88 HOH HOH . E 5 HOH A 89 359 89 HOH HOH . E 5 HOH A 90 360 90 HOH HOH . E 5 HOH A 91 361 91 HOH HOH . E 5 HOH A 92 362 92 HOH HOH . E 5 HOH A 93 363 93 HOH HOH . E 5 HOH A 94 364 94 HOH HOH . E 5 HOH A 95 365 95 HOH HOH . E 5 HOH A 96 366 96 HOH HOH . E 5 HOH A 97 367 97 HOH HOH . E 5 HOH A 98 368 98 HOH HOH . E 5 HOH A 99 369 99 HOH HOH . E 5 HOH A 100 370 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.07 _atom_site.Cartn_y 37.641 _atom_site.Cartn_z 29.857 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 260 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #