data_2BDE # _model_server_result.job_id LyRGQkn8TOeIKXKwkPNc5w _model_server_result.datetime_utc '2024-11-05 00:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":472}' # _entry.id 2BDE # _exptl.entry_id 2BDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BDE _cell.length_a 152.54 _cell.length_b 152.54 _cell.length_c 188.406 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4 A,B,C,D 2 1,5 A,B,C,D 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 152.54 152.54 188.406 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 152.54 152.54 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 188.406 5 'crystal symmetry operation' 5_655 -x+3/2,y,-z+3/4 -1 0 0 0 1 0 0 0 -1 228.81 0 141.3045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 13 A ASN 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 14 A MSE 14 1_555 A N ARG 15 A ARG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ASP 23 A ASP 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 24 A MSE 24 1_555 A N ASP 25 A ASP 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C TYR 121 A TYR 121 1_555 A N MSE 122 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 122 A MSE 122 1_555 A N ALA 123 A ALA 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C LYS 149 A LYS 149 1_555 A N MSE 150 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 150 A MSE 150 1_555 A N PRO 151 A PRO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale9 A C THR 266 A THR 266 1_555 A N MSE 267 A MSE 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 267 A MSE 267 1_555 A N THR 268 A THR 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 A C ALA 347 A ALA 347 1_555 A N MSE 348 A MSE 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 348 A MSE 348 1_555 A N ALA 349 A ALA 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C TYR 430 A TYR 430 1_555 A N MSE 431 A MSE 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 431 A MSE 431 1_555 A N GLU 432 A GLU 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 A C PRO 442 A PRO 442 1_555 A N MSE 443 A MSE 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 443 A MSE 443 1_555 A N THR 444 A THR 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BDE _atom_sites.fract_transf_matrix[1][1] 0.006556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 471 1 SO4 SO4 . C 2 SO4 A 1 472 2 SO4 SO4 . D 3 HOH A 1 473 1 HOH HOH . D 3 HOH A 2 474 2 HOH HOH . D 3 HOH A 3 475 3 HOH HOH . D 3 HOH A 4 476 4 HOH HOH . D 3 HOH A 5 477 5 HOH HOH . D 3 HOH A 6 478 6 HOH HOH . D 3 HOH A 7 479 7 HOH HOH . D 3 HOH A 8 480 8 HOH HOH . D 3 HOH A 9 481 9 HOH HOH . D 3 HOH A 10 482 10 HOH HOH . D 3 HOH A 11 483 11 HOH HOH . D 3 HOH A 12 484 12 HOH HOH . D 3 HOH A 13 485 13 HOH HOH . D 3 HOH A 14 486 14 HOH HOH . D 3 HOH A 15 487 15 HOH HOH . D 3 HOH A 16 488 16 HOH HOH . D 3 HOH A 17 489 17 HOH HOH . D 3 HOH A 18 490 18 HOH HOH . D 3 HOH A 19 491 19 HOH HOH . D 3 HOH A 20 492 20 HOH HOH . D 3 HOH A 21 493 21 HOH HOH . D 3 HOH A 22 494 22 HOH HOH . D 3 HOH A 23 495 23 HOH HOH . D 3 HOH A 24 496 24 HOH HOH . D 3 HOH A 25 497 25 HOH HOH . D 3 HOH A 26 498 26 HOH HOH . D 3 HOH A 27 499 27 HOH HOH . D 3 HOH A 28 500 28 HOH HOH . D 3 HOH A 29 501 29 HOH HOH . D 3 HOH A 30 502 30 HOH HOH . D 3 HOH A 31 503 31 HOH HOH . D 3 HOH A 32 504 32 HOH HOH . D 3 HOH A 33 505 33 HOH HOH . D 3 HOH A 34 506 34 HOH HOH . D 3 HOH A 35 507 35 HOH HOH . D 3 HOH A 36 508 36 HOH HOH . D 3 HOH A 37 509 37 HOH HOH . D 3 HOH A 38 510 38 HOH HOH . D 3 HOH A 39 511 39 HOH HOH . D 3 HOH A 40 512 40 HOH HOH . D 3 HOH A 41 513 41 HOH HOH . D 3 HOH A 42 514 42 HOH HOH . D 3 HOH A 43 515 43 HOH HOH . D 3 HOH A 44 516 44 HOH HOH . D 3 HOH A 45 517 45 HOH HOH . D 3 HOH A 46 518 46 HOH HOH . D 3 HOH A 47 519 47 HOH HOH . D 3 HOH A 48 520 48 HOH HOH . D 3 HOH A 49 521 49 HOH HOH . D 3 HOH A 50 522 50 HOH HOH . D 3 HOH A 51 523 51 HOH HOH . D 3 HOH A 52 524 52 HOH HOH . D 3 HOH A 53 525 53 HOH HOH . D 3 HOH A 54 526 54 HOH HOH . D 3 HOH A 55 527 55 HOH HOH . D 3 HOH A 56 528 56 HOH HOH . D 3 HOH A 57 529 57 HOH HOH . D 3 HOH A 58 530 58 HOH HOH . D 3 HOH A 59 531 59 HOH HOH . D 3 HOH A 60 532 60 HOH HOH . D 3 HOH A 61 533 61 HOH HOH . D 3 HOH A 62 534 62 HOH HOH . D 3 HOH A 63 535 63 HOH HOH . D 3 HOH A 64 536 64 HOH HOH . D 3 HOH A 65 537 65 HOH HOH . D 3 HOH A 66 538 66 HOH HOH . D 3 HOH A 67 539 67 HOH HOH . D 3 HOH A 68 540 68 HOH HOH . D 3 HOH A 69 541 69 HOH HOH . D 3 HOH A 70 542 70 HOH HOH . D 3 HOH A 71 543 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 109.117 67.483 58.09 1 40.66 ? S SO4 472 A 1 HETATM 2 O O1 SO4 . . . C 2 108.485 67.842 59.368 1 45.5 ? O1 SO4 472 A 1 HETATM 3 O O2 SO4 . . . C 2 109.249 68.661 57.233 1 43.12 ? O2 SO4 472 A 1 HETATM 4 O O3 SO4 . . . C 2 108.285 66.46 57.392 1 43.05 ? O3 SO4 472 A 1 HETATM 5 O O4 SO4 . . . C 2 110.454 66.911 58.339 1 42.76 ? O4 SO4 472 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #