data_2BDM # _model_server_result.job_id O--T47Xcw555Cx91OqyTAw _model_server_result.datetime_utc '2024-11-23 21:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 2BDM # _exptl.entry_id 2BDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.392 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[PHENYL-(4-PHENYLPHENYL)-METHYL]IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BDM _cell.length_a 203.21 _cell.length_b 203.21 _cell.length_c 103.45 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 A,B,C,D,E,F,G,H,I,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 203.21 0 51.725 3 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 17.241667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 B FE HEM . A HEM 500 1_555 C NAD TMI . A TMI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C22 H18 N2' _chem_comp.formula_weight 310.392 _chem_comp.id TMI _chem_comp.mon_nstd_flag . _chem_comp.name 1-[PHENYL-(4-PHENYLPHENYL)-METHYL]IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIFONAZOLE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBB CBC TMI sing 466 n y CBB CBA TMI doub 467 n y CBB HBB TMI sing 468 n n CBC CBD TMI doub 469 n y CBC HBC TMI sing 470 n n CBD CBE TMI sing 471 n y CBD HBD TMI sing 472 n n CBE CBF TMI doub 473 n y CBE HBE TMI sing 474 n n CBF CBA TMI sing 475 n y CBF HBF TMI sing 476 n n CBA CAA TMI sing 477 n n CAA NAB TMI sing 478 n n CAA CCA TMI sing 479 n n CAA HAA TMI sing 480 n n NAB CAF TMI sing 481 n y NAB CAC TMI sing 482 n y CAF CAE TMI doub 483 n y CAF HAF TMI sing 484 n n CAE NAD TMI sing 485 n y CAE HAE TMI sing 486 n n NAD CAC TMI doub 487 n y CAC HAC TMI sing 488 n n CCA CCB TMI sing 489 n y CCA CCF TMI doub 490 n y CCB CCC TMI doub 491 n y CCB HCB TMI sing 492 n n CCC CCD TMI sing 493 n y CCC HCC TMI sing 494 n n CCF CCE TMI sing 495 n y CCF HCF TMI sing 496 n n CCE CCD TMI doub 497 n y CCE HCE TMI sing 498 n n CCD CDA TMI sing 499 n y CDA CDB TMI doub 500 n y CDA CDF TMI sing 501 n y CDB CDC TMI sing 502 n y CDB HDB TMI sing 503 n n CDC CDD TMI doub 504 n y CDC HDC TMI sing 505 n n CDD CDE TMI sing 506 n y CDD HDD TMI sing 507 n n CDE CDF TMI doub 508 n y CDE HDE TMI sing 509 n n CDF HDF TMI sing 510 n n # _atom_sites.entry_id 2BDM _atom_sites.fract_transf_matrix[1][1] 0.004921 _atom_sites.fract_transf_matrix[1][2] 0.002841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 TMI A 1 501 501 TMI TMI . D 3 TMI A 1 502 502 TMI TMI . E 3 TMI A 1 503 503 TMI TMI . F 4 CM5 A 1 504 504 CM5 CM5 . G 4 CM5 A 1 505 505 CM5 CM5 . H 4 CM5 A 1 506 506 CM5 CM5 . I 4 CM5 A 1 507 507 CM5 CM5 . J 5 HOH A 1 601 601 HOH HOH . J 5 HOH A 2 602 602 HOH HOH . J 5 HOH A 3 603 603 HOH HOH . J 5 HOH A 4 604 604 HOH HOH . J 5 HOH A 5 605 605 HOH HOH . J 5 HOH A 6 606 606 HOH HOH . J 5 HOH A 7 607 607 HOH HOH . J 5 HOH A 8 608 608 HOH HOH . J 5 HOH A 9 609 609 HOH HOH . J 5 HOH A 10 610 610 HOH HOH . J 5 HOH A 11 611 611 HOH HOH . J 5 HOH A 12 612 612 HOH HOH . J 5 HOH A 13 613 613 HOH HOH . J 5 HOH A 14 614 614 HOH HOH . J 5 HOH A 15 615 615 HOH HOH . J 5 HOH A 16 616 616 HOH HOH . J 5 HOH A 17 617 617 HOH HOH . J 5 HOH A 18 618 618 HOH HOH . J 5 HOH A 19 619 619 HOH HOH . J 5 HOH A 20 620 620 HOH HOH . J 5 HOH A 21 621 621 HOH HOH . J 5 HOH A 22 622 622 HOH HOH . J 5 HOH A 23 623 623 HOH HOH . J 5 HOH A 24 624 624 HOH HOH . J 5 HOH A 25 625 625 HOH HOH . J 5 HOH A 26 626 626 HOH HOH . J 5 HOH A 27 627 627 HOH HOH . J 5 HOH A 28 628 628 HOH HOH . J 5 HOH A 29 629 629 HOH HOH . J 5 HOH A 30 630 630 HOH HOH . J 5 HOH A 31 631 631 HOH HOH . J 5 HOH A 32 632 632 HOH HOH . J 5 HOH A 33 633 633 HOH HOH . J 5 HOH A 34 634 634 HOH HOH . J 5 HOH A 35 635 635 HOH HOH . J 5 HOH A 36 636 636 HOH HOH . J 5 HOH A 37 637 637 HOH HOH . J 5 HOH A 38 638 638 HOH HOH . J 5 HOH A 39 639 639 HOH HOH . J 5 HOH A 40 640 640 HOH HOH . J 5 HOH A 41 641 641 HOH HOH . J 5 HOH A 42 642 642 HOH HOH . J 5 HOH A 43 643 643 HOH HOH . J 5 HOH A 44 644 644 HOH HOH . J 5 HOH A 45 645 645 HOH HOH . J 5 HOH A 46 646 646 HOH HOH . J 5 HOH A 47 647 647 HOH HOH . J 5 HOH A 48 648 648 HOH HOH . J 5 HOH A 49 649 649 HOH HOH . J 5 HOH A 50 650 650 HOH HOH . J 5 HOH A 51 651 651 HOH HOH . J 5 HOH A 52 652 652 HOH HOH . J 5 HOH A 53 653 653 HOH HOH . J 5 HOH A 54 654 654 HOH HOH . J 5 HOH A 55 655 655 HOH HOH . J 5 HOH A 56 656 656 HOH HOH . J 5 HOH A 57 657 657 HOH HOH . J 5 HOH A 58 658 658 HOH HOH . J 5 HOH A 59 659 659 HOH HOH . J 5 HOH A 60 660 660 HOH HOH . J 5 HOH A 61 661 661 HOH HOH . J 5 HOH A 62 662 662 HOH HOH . J 5 HOH A 63 663 663 HOH HOH . J 5 HOH A 64 664 664 HOH HOH . J 5 HOH A 65 665 665 HOH HOH . J 5 HOH A 66 666 666 HOH HOH . J 5 HOH A 67 667 667 HOH HOH . J 5 HOH A 68 668 668 HOH HOH . J 5 HOH A 69 669 669 HOH HOH . J 5 HOH A 70 670 670 HOH HOH . J 5 HOH A 71 671 671 HOH HOH . J 5 HOH A 72 672 672 HOH HOH . J 5 HOH A 73 673 673 HOH HOH . J 5 HOH A 74 674 674 HOH HOH . J 5 HOH A 75 675 675 HOH HOH . J 5 HOH A 76 676 676 HOH HOH . J 5 HOH A 77 677 677 HOH HOH . J 5 HOH A 78 678 678 HOH HOH . J 5 HOH A 79 679 679 HOH HOH . J 5 HOH A 80 680 680 HOH HOH . J 5 HOH A 81 681 681 HOH HOH . J 5 HOH A 82 682 682 HOH HOH . J 5 HOH A 83 683 683 HOH HOH . J 5 HOH A 84 684 684 HOH HOH . J 5 HOH A 85 685 685 HOH HOH . J 5 HOH A 86 686 686 HOH HOH . J 5 HOH A 87 687 687 HOH HOH . J 5 HOH A 88 688 688 HOH HOH . J 5 HOH A 89 689 689 HOH HOH . J 5 HOH A 90 690 690 HOH HOH . J 5 HOH A 91 691 691 HOH HOH . J 5 HOH A 92 692 692 HOH HOH . J 5 HOH A 93 693 693 HOH HOH . J 5 HOH A 94 694 694 HOH HOH . J 5 HOH A 95 695 695 HOH HOH . J 5 HOH A 96 696 696 HOH HOH . J 5 HOH A 97 697 697 HOH HOH . J 5 HOH A 98 698 698 HOH HOH . J 5 HOH A 99 699 699 HOH HOH . J 5 HOH A 100 700 700 HOH HOH . J 5 HOH A 101 701 701 HOH HOH . J 5 HOH A 102 702 702 HOH HOH . J 5 HOH A 103 703 703 HOH HOH . J 5 HOH A 104 704 704 HOH HOH . J 5 HOH A 105 705 705 HOH HOH . J 5 HOH A 106 706 706 HOH HOH . J 5 HOH A 107 707 707 HOH HOH . J 5 HOH A 108 708 708 HOH HOH . J 5 HOH A 109 709 709 HOH HOH . J 5 HOH A 110 710 710 HOH HOH . J 5 HOH A 111 711 711 HOH HOH . J 5 HOH A 112 712 712 HOH HOH . J 5 HOH A 113 713 713 HOH HOH . J 5 HOH A 114 714 714 HOH HOH . J 5 HOH A 115 715 715 HOH HOH . J 5 HOH A 116 716 716 HOH HOH . J 5 HOH A 117 717 717 HOH HOH . J 5 HOH A 118 718 718 HOH HOH . J 5 HOH A 119 719 719 HOH HOH . J 5 HOH A 120 720 720 HOH HOH . J 5 HOH A 121 721 721 HOH HOH . J 5 HOH A 122 722 722 HOH HOH . J 5 HOH A 123 723 723 HOH HOH . J 5 HOH A 124 724 724 HOH HOH . J 5 HOH A 125 725 725 HOH HOH . J 5 HOH A 126 726 726 HOH HOH . J 5 HOH A 127 727 727 HOH HOH . J 5 HOH A 128 728 728 HOH HOH . J 5 HOH A 129 729 729 HOH HOH . J 5 HOH A 130 730 730 HOH HOH . J 5 HOH A 131 731 731 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBB TMI . . . E 3 86.491 25.883 27.132 1 120.57 ? CBB TMI 503 A 1 HETATM 2 C CBC TMI . . . E 3 85.672 25.393 26.119 1 178.27 ? CBC TMI 503 A 1 HETATM 3 C CBD TMI . . . E 3 85.185 26.255 25.14 1 155.71 ? CBD TMI 503 A 1 HETATM 4 C CBE TMI . . . E 3 85.516 27.606 25.173 1 112.21 ? CBE TMI 503 A 1 HETATM 5 C CBF TMI . . . E 3 86.335 28.093 26.187 1 123.91 ? CBF TMI 503 A 1 HETATM 6 C CBA TMI . . . E 3 86.825 27.234 27.167 1 121.2 ? CBA TMI 503 A 1 HETATM 7 C CAA TMI . . . E 3 87.744 27.753 28.278 1 104.23 ? CAA TMI 503 A 1 HETATM 8 N NAB TMI . . . E 3 89.133 27.904 27.815 1 101.77 ? NAB TMI 503 A 1 HETATM 9 C CAF TMI . . . E 3 90.202 27.68 28.574 1 96.08 ? CAF TMI 503 A 1 HETATM 10 C CAE TMI . . . E 3 91.268 27.864 27.799 1 96.9 ? CAE TMI 503 A 1 HETATM 11 N NAD TMI . . . E 3 90.851 28.2 26.58 1 81.58 ? NAD TMI 503 A 1 HETATM 12 C CAC TMI . . . E 3 89.521 28.228 26.585 1 90.99 ? CAC TMI 503 A 1 HETATM 13 C CCA TMI . . . E 3 87.197 29.045 28.892 1 92.02 ? CCA TMI 503 A 1 HETATM 14 C CCB TMI . . . E 3 86.211 28.976 29.872 1 90.65 ? CCB TMI 503 A 1 HETATM 15 C CCC TMI . . . E 3 85.655 30.144 30.386 1 84.69 ? CCC TMI 503 A 1 HETATM 16 C CCF TMI . . . E 3 87.63 30.287 28.436 1 84.08 ? CCF TMI 503 A 1 HETATM 17 C CCE TMI . . . E 3 87.07 31.452 28.953 1 77.24 ? CCE TMI 503 A 1 HETATM 18 C CCD TMI . . . E 3 86.076 31.39 29.928 1 80.65 ? CCD TMI 503 A 1 HETATM 19 C CDA TMI . . . E 3 85.513 32.555 30.443 1 77.67 ? CDA TMI 503 A 1 HETATM 20 C CDB TMI . . . E 3 85.038 32.593 31.752 1 81.97 ? CDB TMI 503 A 1 HETATM 21 C CDC TMI . . . E 3 84.495 33.762 32.277 1 85.57 ? CDC TMI 503 A 1 HETATM 22 C CDD TMI . . . E 3 84.421 34.907 31.49 1 82.57 ? CDD TMI 503 A 1 HETATM 23 C CDE TMI . . . E 3 84.892 34.878 30.181 1 78.65 ? CDE TMI 503 A 1 HETATM 24 C CDF TMI . . . E 3 85.436 33.707 29.663 1 77.68 ? CDF TMI 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #