data_2BE2 # _model_server_result.job_id nAJCXEh6Z_TiswzxXlnXYg _model_server_result.datetime_utc '2024-11-05 08:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2be2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3000}' # _entry.id 2BE2 # _exptl.entry_id 2BE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.22 _cell.angle_gamma 90 _cell.entry_id 2BE2 _cell.length_a 223.853 _cell.length_b 68.798 _cell.length_c 104.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC ? 2000 SUC 3 n C FRU 2 C 2 FRU ? 2000 SUC 3 n D GLC 1 D 1 GLC ? 2001 SUC 3 n D FRU 2 D 2 FRU ? 2001 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 sing covale ? covale2 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 sing metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OD1 ASP 498 A ASP 498 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 A OD2 ASP 498 A ASP 498 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc4 I O HOH . A HOH 1001 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc5 I O HOH . A HOH 1050 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 I O HOH . A HOH 1051 1_555 G MN MN . A MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 177 n n C1 C2 GOL sing 178 n n C1 H11 GOL sing 179 n n C1 H12 GOL sing 180 n n O1 HO1 GOL sing 181 n n C2 O2 GOL sing 182 n n C2 C3 GOL sing 183 n n C2 H2 GOL sing 184 n n O2 HO2 GOL sing 185 n n C3 O3 GOL sing 186 n n C3 H31 GOL sing 187 n n C3 H32 GOL sing 188 n n O3 HO3 GOL sing 189 n n # _atom_sites.entry_id 2BE2 _atom_sites.fract_transf_matrix[1][1] 0.004467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001385 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 3000 3000 GOL GOL . F 4 GOL A 1 3001 3001 GOL GOL . G 5 MN A 1 4001 4001 MN MN . H 6 R22 A 1 4002 1 R22 R22 . I 7 HOH A 1 1001 1001 HOH HOH . I 7 HOH A 2 1006 1006 HOH HOH . I 7 HOH A 3 1007 1007 HOH HOH . I 7 HOH A 4 1008 1008 HOH HOH . I 7 HOH A 5 1009 1009 HOH HOH . I 7 HOH A 6 1010 1010 HOH HOH . I 7 HOH A 7 1011 1011 HOH HOH . I 7 HOH A 8 1012 1012 HOH HOH . I 7 HOH A 9 1013 1013 HOH HOH . I 7 HOH A 10 1014 1014 HOH HOH . I 7 HOH A 11 1017 1017 HOH HOH . I 7 HOH A 12 1018 1018 HOH HOH . I 7 HOH A 13 1023 1023 HOH HOH . I 7 HOH A 14 1024 1024 HOH HOH . I 7 HOH A 15 1026 1026 HOH HOH . I 7 HOH A 16 1032 1032 HOH HOH . I 7 HOH A 17 1033 1033 HOH HOH . I 7 HOH A 18 1042 1042 HOH HOH . I 7 HOH A 19 1044 1044 HOH HOH . I 7 HOH A 20 1045 1045 HOH HOH . I 7 HOH A 21 1046 1046 HOH HOH . I 7 HOH A 22 1047 1047 HOH HOH . I 7 HOH A 23 1048 1048 HOH HOH . I 7 HOH A 24 1049 1049 HOH HOH . I 7 HOH A 25 1050 1050 HOH HOH . I 7 HOH A 26 1051 1051 HOH HOH . I 7 HOH A 27 1052 1052 HOH HOH . I 7 HOH A 28 1053 1053 HOH HOH . I 7 HOH A 29 1054 1054 HOH HOH . I 7 HOH A 30 1055 1055 HOH HOH . I 7 HOH A 31 1056 1056 HOH HOH . I 7 HOH A 32 1057 1057 HOH HOH . I 7 HOH A 33 1058 1058 HOH HOH . I 7 HOH A 34 1063 1063 HOH HOH . I 7 HOH A 35 1064 1064 HOH HOH . I 7 HOH A 36 1066 1066 HOH HOH . I 7 HOH A 37 1067 1067 HOH HOH . I 7 HOH A 38 1069 1069 HOH HOH . I 7 HOH A 39 1074 1074 HOH HOH . I 7 HOH A 40 1077 1077 HOH HOH . I 7 HOH A 41 1078 1078 HOH HOH . I 7 HOH A 42 1079 1079 HOH HOH . I 7 HOH A 43 1080 1080 HOH HOH . I 7 HOH A 44 1081 1081 HOH HOH . I 7 HOH A 45 1083 1083 HOH HOH . I 7 HOH A 46 1084 1084 HOH HOH . I 7 HOH A 47 1085 1085 HOH HOH . I 7 HOH A 48 1086 1086 HOH HOH . I 7 HOH A 49 1087 1087 HOH HOH . I 7 HOH A 50 1088 1088 HOH HOH . I 7 HOH A 51 1089 1089 HOH HOH . I 7 HOH A 52 1094 1094 HOH HOH . I 7 HOH A 53 1096 1096 HOH HOH . I 7 HOH A 54 1100 1100 HOH HOH . I 7 HOH A 55 1101 1101 HOH HOH . I 7 HOH A 56 1102 1102 HOH HOH . I 7 HOH A 57 1103 1103 HOH HOH . I 7 HOH A 58 1104 1104 HOH HOH . I 7 HOH A 59 1105 1105 HOH HOH . I 7 HOH A 60 1106 1106 HOH HOH . I 7 HOH A 61 1107 1107 HOH HOH . I 7 HOH A 62 1108 1108 HOH HOH . I 7 HOH A 63 1109 1109 HOH HOH . I 7 HOH A 64 1110 1110 HOH HOH . I 7 HOH A 65 1111 1111 HOH HOH . I 7 HOH A 66 1112 1112 HOH HOH . I 7 HOH A 67 1113 1113 HOH HOH . I 7 HOH A 68 1114 1114 HOH HOH . I 7 HOH A 69 1115 1115 HOH HOH . I 7 HOH A 70 1116 1116 HOH HOH . I 7 HOH A 71 1117 1117 HOH HOH . I 7 HOH A 72 1118 1118 HOH HOH . I 7 HOH A 73 1119 1119 HOH HOH . I 7 HOH A 74 1120 1120 HOH HOH . I 7 HOH A 75 1121 1121 HOH HOH . I 7 HOH A 76 1122 1122 HOH HOH . I 7 HOH A 77 1123 1123 HOH HOH . I 7 HOH A 78 1127 1127 HOH HOH . I 7 HOH A 79 1129 1129 HOH HOH . I 7 HOH A 80 1130 1130 HOH HOH . I 7 HOH A 81 1131 1131 HOH HOH . I 7 HOH A 82 1136 1136 HOH HOH . I 7 HOH A 83 1137 1137 HOH HOH . I 7 HOH A 84 1138 1138 HOH HOH . I 7 HOH A 85 1140 1140 HOH HOH . I 7 HOH A 86 1143 1143 HOH HOH . I 7 HOH A 87 1144 1144 HOH HOH . I 7 HOH A 88 1145 1145 HOH HOH . I 7 HOH A 89 1146 1146 HOH HOH . I 7 HOH A 90 1149 1149 HOH HOH . I 7 HOH A 91 1150 1150 HOH HOH . I 7 HOH A 92 1151 1151 HOH HOH . I 7 HOH A 93 1152 1152 HOH HOH . I 7 HOH A 94 1154 1154 HOH HOH . J 7 HOH B 1 1002 1002 HOH HOH . J 7 HOH B 2 1003 1003 HOH HOH . J 7 HOH B 3 1004 1004 HOH HOH . J 7 HOH B 4 1005 1005 HOH HOH . J 7 HOH B 5 1015 1015 HOH HOH . J 7 HOH B 6 1016 1016 HOH HOH . J 7 HOH B 7 1019 1019 HOH HOH . J 7 HOH B 8 1020 1020 HOH HOH . J 7 HOH B 9 1021 1021 HOH HOH . J 7 HOH B 10 1022 1022 HOH HOH . J 7 HOH B 11 1025 1025 HOH HOH . J 7 HOH B 12 1027 1027 HOH HOH . J 7 HOH B 13 1028 1028 HOH HOH . J 7 HOH B 14 1029 1029 HOH HOH . J 7 HOH B 15 1030 1030 HOH HOH . J 7 HOH B 16 1031 1031 HOH HOH . J 7 HOH B 17 1034 1034 HOH HOH . J 7 HOH B 18 1035 1035 HOH HOH . J 7 HOH B 19 1036 1036 HOH HOH . J 7 HOH B 20 1037 1037 HOH HOH . J 7 HOH B 21 1038 1038 HOH HOH . J 7 HOH B 22 1039 1039 HOH HOH . J 7 HOH B 23 1040 1040 HOH HOH . J 7 HOH B 24 1041 1041 HOH HOH . J 7 HOH B 25 1043 1043 HOH HOH . J 7 HOH B 26 1059 1059 HOH HOH . J 7 HOH B 27 1060 1060 HOH HOH . J 7 HOH B 28 1061 1061 HOH HOH . J 7 HOH B 29 1062 1062 HOH HOH . J 7 HOH B 30 1065 1065 HOH HOH . J 7 HOH B 31 1068 1068 HOH HOH . J 7 HOH B 32 1070 1070 HOH HOH . J 7 HOH B 33 1071 1071 HOH HOH . J 7 HOH B 34 1072 1072 HOH HOH . J 7 HOH B 35 1073 1073 HOH HOH . J 7 HOH B 36 1075 1075 HOH HOH . J 7 HOH B 37 1076 1076 HOH HOH . J 7 HOH B 38 1082 1082 HOH HOH . J 7 HOH B 39 1090 1090 HOH HOH . J 7 HOH B 40 1091 1091 HOH HOH . J 7 HOH B 41 1092 1092 HOH HOH . J 7 HOH B 42 1093 1093 HOH HOH . J 7 HOH B 43 1095 1095 HOH HOH . J 7 HOH B 44 1097 1097 HOH HOH . J 7 HOH B 45 1098 1098 HOH HOH . J 7 HOH B 46 1099 1099 HOH HOH . J 7 HOH B 47 1124 1124 HOH HOH . J 7 HOH B 48 1125 1125 HOH HOH . J 7 HOH B 49 1126 1126 HOH HOH . J 7 HOH B 50 1128 1128 HOH HOH . J 7 HOH B 51 1132 1132 HOH HOH . J 7 HOH B 52 1133 1133 HOH HOH . J 7 HOH B 53 1134 1134 HOH HOH . J 7 HOH B 54 1135 1135 HOH HOH . J 7 HOH B 55 1139 1139 HOH HOH . J 7 HOH B 56 1141 1141 HOH HOH . J 7 HOH B 57 1142 1142 HOH HOH . J 7 HOH B 58 1147 1147 HOH HOH . J 7 HOH B 59 1148 1148 HOH HOH . J 7 HOH B 60 1153 1153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 55.298 -18.44 12.012 1 80.61 ? C1 GOL 3000 A 1 HETATM 2 O O1 GOL . . . E 4 54.633 -19.692 12.005 1 78.63 ? O1 GOL 3000 A 1 HETATM 3 C C2 GOL . . . E 4 56.832 -18.608 12.043 1 88.05 ? C2 GOL 3000 A 1 HETATM 4 O O2 GOL . . . E 4 57.399 -17.326 12.166 1 90.05 ? O2 GOL 3000 A 1 HETATM 5 C C3 GOL . . . E 4 57.414 -19.29 10.79 1 82.33 ? C3 GOL 3000 A 1 HETATM 6 O O3 GOL . . . E 4 57.438 -20.682 10.997 1 76.38 ? O3 GOL 3000 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #