data_2BEC # _model_server_result.job_id Pr8KGdZTzMm0jRj3_Y4sVw _model_server_result.datetime_utc '2024-11-05 00:30:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 2BEC # _exptl.entry_id 2BEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.906 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTRIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BEC _cell.length_a 49.262 _cell.length_b 49.262 _cell.length_c 102.587 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 124 A ASP 124 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A OD1 ASP 126 A ASP 126 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A OD2 ASP 128 A ASP 128 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 A O LYS 130 A LYS 130 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OE1 GLU 135 A GLU 135 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc6 A OE2 GLU 135 A GLU 135 1_555 D Y YT3 . A YT3 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A OD1 ASP 165 A ASP 165 1_555 C Y YT3 . A YT3 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc8 A OD1 ASP 167 A ASP 167 1_555 C Y YT3 . A YT3 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc9 A OD2 ASP 169 A ASP 169 1_555 C Y YT3 . A YT3 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 A O ALA 171 A ALA 171 1_555 C Y YT3 . A YT3 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 A OE1 GLU 176 A GLU 176 1_555 C Y YT3 . A YT3 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'Y 3' _chem_comp.formula_weight 88.906 _chem_comp.id YT3 _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTRIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BEC _atom_sites.fract_transf_matrix[1][1] 0.0203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YT3 A 1 1201 1201 YT3 YT3 . D 3 YT3 A 1 1202 1202 YT3 YT3 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol Y _atom_site.label_atom_id Y _atom_site.label_comp_id YT3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.761 _atom_site.Cartn_y 15.255 _atom_site.Cartn_z 41.766 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id Y _atom_site.auth_comp_id YT3 _atom_site.auth_seq_id 1202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #