data_2BEZ # _model_server_result.job_id E_ODfJJbwtDcjHYG43Y4qw _model_server_result.datetime_utc '2024-11-21 16:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1973}' # _entry.id 2BEZ # _exptl.entry_id 2BEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BEZ _cell.length_a 37.345 _cell.length_b 37.345 _cell.length_c 469.823 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 64.683437 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -56.0175 32.341719 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2BEZ _atom_sites.fract_transf_matrix[1][1] 0.026777 _atom_sites.fract_transf_matrix[1][2] 0.01546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL C 1 1973 1973 GOL GOL . D 4 HOH C 1 2001 2001 HOH HOH . D 4 HOH C 2 2002 2002 HOH HOH . D 4 HOH C 3 2003 2003 HOH HOH . D 4 HOH C 4 2004 2004 HOH HOH . D 4 HOH C 5 2005 2005 HOH HOH . D 4 HOH C 6 2006 2006 HOH HOH . D 4 HOH C 7 2007 2007 HOH HOH . D 4 HOH C 8 2008 2008 HOH HOH . D 4 HOH C 9 2009 2009 HOH HOH . D 4 HOH C 10 2010 2010 HOH HOH . D 4 HOH C 11 2011 2011 HOH HOH . D 4 HOH C 12 2012 2012 HOH HOH . D 4 HOH C 13 2013 2013 HOH HOH . D 4 HOH C 14 2014 2014 HOH HOH . D 4 HOH C 15 2015 2015 HOH HOH . D 4 HOH C 16 2016 2016 HOH HOH . D 4 HOH C 17 2017 2017 HOH HOH . D 4 HOH C 18 2018 2018 HOH HOH . D 4 HOH C 19 2019 2019 HOH HOH . D 4 HOH C 20 2020 2020 HOH HOH . D 4 HOH C 21 2021 2021 HOH HOH . D 4 HOH C 22 2022 2022 HOH HOH . D 4 HOH C 23 2023 2023 HOH HOH . D 4 HOH C 24 2024 2024 HOH HOH . D 4 HOH C 25 2025 2025 HOH HOH . D 4 HOH C 26 2026 2026 HOH HOH . D 4 HOH C 27 2027 2027 HOH HOH . D 4 HOH C 28 2028 2028 HOH HOH . D 4 HOH C 29 2029 2029 HOH HOH . D 4 HOH C 30 2030 2030 HOH HOH . D 4 HOH C 31 2031 2031 HOH HOH . D 4 HOH C 32 2032 2032 HOH HOH . D 4 HOH C 33 2033 2033 HOH HOH . D 4 HOH C 34 2034 2034 HOH HOH . D 4 HOH C 35 2035 2035 HOH HOH . D 4 HOH C 36 2036 2036 HOH HOH . D 4 HOH C 37 2037 2037 HOH HOH . D 4 HOH C 38 2038 2038 HOH HOH . D 4 HOH C 39 2039 2039 HOH HOH . D 4 HOH C 40 2040 2040 HOH HOH . D 4 HOH C 41 2041 2041 HOH HOH . D 4 HOH C 42 2042 2042 HOH HOH . D 4 HOH C 43 2043 2043 HOH HOH . D 4 HOH C 44 2044 2044 HOH HOH . D 4 HOH C 45 2045 2045 HOH HOH . D 4 HOH C 46 2046 2046 HOH HOH . D 4 HOH C 47 2047 2047 HOH HOH . D 4 HOH C 48 2048 2048 HOH HOH . D 4 HOH C 49 2049 2049 HOH HOH . E 4 HOH F 1 2001 2001 HOH HOH . E 4 HOH F 2 2002 2002 HOH HOH . E 4 HOH F 3 2003 2003 HOH HOH . E 4 HOH F 4 2004 2004 HOH HOH . E 4 HOH F 5 2005 2005 HOH HOH . E 4 HOH F 6 2006 2006 HOH HOH . E 4 HOH F 7 2007 2007 HOH HOH . E 4 HOH F 8 2008 2008 HOH HOH . E 4 HOH F 9 2009 2009 HOH HOH . E 4 HOH F 10 2010 2010 HOH HOH . E 4 HOH F 11 2011 2011 HOH HOH . E 4 HOH F 12 2012 2012 HOH HOH . E 4 HOH F 13 2013 2013 HOH HOH . E 4 HOH F 14 2014 2014 HOH HOH . E 4 HOH F 15 2015 2015 HOH HOH . E 4 HOH F 16 2016 2016 HOH HOH . E 4 HOH F 17 2017 2017 HOH HOH . E 4 HOH F 18 2018 2018 HOH HOH . E 4 HOH F 19 2019 2019 HOH HOH . E 4 HOH F 20 2020 2020 HOH HOH . E 4 HOH F 21 2021 2021 HOH HOH . E 4 HOH F 22 2022 2022 HOH HOH . E 4 HOH F 23 2023 2023 HOH HOH . E 4 HOH F 24 2024 2024 HOH HOH . E 4 HOH F 25 2025 2025 HOH HOH . E 4 HOH F 26 2026 2026 HOH HOH . E 4 HOH F 27 2027 2027 HOH HOH . E 4 HOH F 28 2028 2028 HOH HOH . E 4 HOH F 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -25.666 21.972 143.661 1 22.36 ? C1 GOL 1973 C 1 HETATM 2 O O1 GOL . . . C 3 -25.556 21.799 144.957 1 29.26 ? O1 GOL 1973 C 1 HETATM 3 C C2 GOL . . . C 3 -26.565 23.064 143.195 1 29.04 ? C2 GOL 1973 C 1 HETATM 4 O O2 GOL . . . C 3 -26.98 22.416 141.957 1 37.14 ? O2 GOL 1973 C 1 HETATM 5 C C3 GOL . . . C 3 -27.716 23.262 144.129 1 32.9 ? C3 GOL 1973 C 1 HETATM 6 O O3 GOL . . . C 3 -28.563 24.244 143.583 1 25.35 ? O3 GOL 1973 C 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #