data_2BF4 # _model_server_result.job_id MFj-YADfmKI_HVyYbTr1ow _model_server_result.datetime_utc '2025-07-05 05:35:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":753}' # _entry.id 2BF4 # _exptl.entry_id 2BF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BF4 _cell.length_a 77.751 _cell.length_b 87.094 _cell.length_c 259.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,N 1 1 B,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 2BF4 _atom_sites.fract_transf_matrix[1][1] 0.012862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 3 FMN A 1 752 752 FMN FMN . F 4 NAP A 1 753 753 NAP NAP . G 5 SO4 A 1 760 760 SO4 SO4 . H 5 SO4 A 1 761 761 SO4 SO4 . I 5 SO4 A 1 762 762 SO4 SO4 . J 2 FAD B 1 750 750 FAD FAD . K 3 FMN B 1 751 751 FMN FMN . L 3 FMN B 1 752 752 FMN FMN . M 4 NAP B 1 753 753 NAP NAP . N 6 HOH A 1 2001 2001 HOH HOH . N 6 HOH A 2 2002 2002 HOH HOH . N 6 HOH A 3 2003 2003 HOH HOH . N 6 HOH A 4 2004 2004 HOH HOH . N 6 HOH A 5 2005 2005 HOH HOH . N 6 HOH A 6 2006 2006 HOH HOH . N 6 HOH A 7 2007 2007 HOH HOH . N 6 HOH A 8 2008 2008 HOH HOH . N 6 HOH A 9 2009 2009 HOH HOH . N 6 HOH A 10 2010 2010 HOH HOH . N 6 HOH A 11 2011 2011 HOH HOH . N 6 HOH A 12 2012 2012 HOH HOH . N 6 HOH A 13 2013 2013 HOH HOH . N 6 HOH A 14 2014 2014 HOH HOH . N 6 HOH A 15 2015 2015 HOH HOH . N 6 HOH A 16 2016 2016 HOH HOH . N 6 HOH A 17 2017 2017 HOH HOH . N 6 HOH A 18 2018 2018 HOH HOH . N 6 HOH A 19 2019 2019 HOH HOH . N 6 HOH A 20 2020 2020 HOH HOH . N 6 HOH A 21 2021 2021 HOH HOH . N 6 HOH A 22 2022 2022 HOH HOH . N 6 HOH A 23 2023 2023 HOH HOH . N 6 HOH A 24 2024 2024 HOH HOH . N 6 HOH A 25 2025 2025 HOH HOH . N 6 HOH A 26 2026 2026 HOH HOH . N 6 HOH A 27 2027 2027 HOH HOH . N 6 HOH A 28 2028 2028 HOH HOH . N 6 HOH A 29 2029 2029 HOH HOH . N 6 HOH A 30 2030 2030 HOH HOH . N 6 HOH A 31 2031 2031 HOH HOH . N 6 HOH A 32 2032 2032 HOH HOH . N 6 HOH A 33 2033 2033 HOH HOH . N 6 HOH A 34 2034 2034 HOH HOH . N 6 HOH A 35 2035 2035 HOH HOH . N 6 HOH A 36 2036 2036 HOH HOH . N 6 HOH A 37 2037 2037 HOH HOH . N 6 HOH A 38 2038 2038 HOH HOH . N 6 HOH A 39 2039 2039 HOH HOH . N 6 HOH A 40 2040 2040 HOH HOH . N 6 HOH A 41 2041 2041 HOH HOH . N 6 HOH A 42 2042 2042 HOH HOH . N 6 HOH A 43 2043 2043 HOH HOH . N 6 HOH A 44 2044 2044 HOH HOH . N 6 HOH A 45 2045 2045 HOH HOH . N 6 HOH A 46 2046 2046 HOH HOH . N 6 HOH A 47 2047 2047 HOH HOH . N 6 HOH A 48 2048 2048 HOH HOH . N 6 HOH A 49 2049 2049 HOH HOH . N 6 HOH A 50 2050 2050 HOH HOH . N 6 HOH A 51 2051 2051 HOH HOH . N 6 HOH A 52 2052 2052 HOH HOH . N 6 HOH A 53 2053 2053 HOH HOH . N 6 HOH A 54 2054 2054 HOH HOH . N 6 HOH A 55 2055 2055 HOH HOH . N 6 HOH A 56 2056 2056 HOH HOH . N 6 HOH A 57 2057 2057 HOH HOH . N 6 HOH A 58 2058 2058 HOH HOH . N 6 HOH A 59 2059 2059 HOH HOH . N 6 HOH A 60 2060 2060 HOH HOH . N 6 HOH A 61 2061 2061 HOH HOH . N 6 HOH A 62 2062 2062 HOH HOH . N 6 HOH A 63 2063 2063 HOH HOH . N 6 HOH A 64 2064 2064 HOH HOH . N 6 HOH A 65 2065 2065 HOH HOH . N 6 HOH A 66 2066 2066 HOH HOH . N 6 HOH A 67 2067 2067 HOH HOH . N 6 HOH A 68 2068 2068 HOH HOH . N 6 HOH A 69 2069 2069 HOH HOH . N 6 HOH A 70 2070 2070 HOH HOH . N 6 HOH A 71 2071 2071 HOH HOH . N 6 HOH A 72 2072 2072 HOH HOH . N 6 HOH A 73 2073 2073 HOH HOH . N 6 HOH A 74 2074 2074 HOH HOH . N 6 HOH A 75 2075 2075 HOH HOH . N 6 HOH A 76 2076 2076 HOH HOH . N 6 HOH A 77 2077 2077 HOH HOH . N 6 HOH A 78 2078 2078 HOH HOH . N 6 HOH A 79 2079 2079 HOH HOH . N 6 HOH A 80 2080 2080 HOH HOH . N 6 HOH A 81 2081 2081 HOH HOH . N 6 HOH A 82 2082 2082 HOH HOH . N 6 HOH A 83 2083 2083 HOH HOH . N 6 HOH A 84 2084 2084 HOH HOH . N 6 HOH A 85 2085 2085 HOH HOH . N 6 HOH A 86 2086 2086 HOH HOH . N 6 HOH A 87 2087 2087 HOH HOH . N 6 HOH A 88 2088 2088 HOH HOH . N 6 HOH A 89 2089 2089 HOH HOH . N 6 HOH A 90 2090 2090 HOH HOH . N 6 HOH A 91 2091 2091 HOH HOH . N 6 HOH A 92 2092 2092 HOH HOH . N 6 HOH A 93 2093 2093 HOH HOH . N 6 HOH A 94 2094 2094 HOH HOH . N 6 HOH A 95 2095 2095 HOH HOH . N 6 HOH A 96 2096 2096 HOH HOH . N 6 HOH A 97 2097 2097 HOH HOH . N 6 HOH A 98 2098 2098 HOH HOH . N 6 HOH A 99 2099 2099 HOH HOH . N 6 HOH A 100 2100 2100 HOH HOH . N 6 HOH A 101 2101 2101 HOH HOH . N 6 HOH A 102 2102 2102 HOH HOH . N 6 HOH A 103 2103 2103 HOH HOH . N 6 HOH A 104 2104 2104 HOH HOH . N 6 HOH A 105 2105 2105 HOH HOH . N 6 HOH A 106 2106 2106 HOH HOH . N 6 HOH A 107 2107 2107 HOH HOH . O 6 HOH B 1 2001 2001 HOH HOH . O 6 HOH B 2 2002 2002 HOH HOH . O 6 HOH B 3 2003 2003 HOH HOH . O 6 HOH B 4 2004 2004 HOH HOH . O 6 HOH B 5 2005 2005 HOH HOH . O 6 HOH B 6 2006 2006 HOH HOH . O 6 HOH B 7 2007 2007 HOH HOH . O 6 HOH B 8 2008 2008 HOH HOH . O 6 HOH B 9 2009 2009 HOH HOH . O 6 HOH B 10 2010 2010 HOH HOH . O 6 HOH B 11 2011 2011 HOH HOH . O 6 HOH B 12 2012 2012 HOH HOH . O 6 HOH B 13 2013 2013 HOH HOH . O 6 HOH B 14 2014 2014 HOH HOH . O 6 HOH B 15 2015 2015 HOH HOH . O 6 HOH B 16 2016 2016 HOH HOH . O 6 HOH B 17 2017 2017 HOH HOH . O 6 HOH B 18 2018 2018 HOH HOH . O 6 HOH B 19 2019 2019 HOH HOH . O 6 HOH B 20 2020 2020 HOH HOH . O 6 HOH B 21 2021 2021 HOH HOH . O 6 HOH B 22 2022 2022 HOH HOH . O 6 HOH B 23 2023 2023 HOH HOH . O 6 HOH B 24 2024 2024 HOH HOH . O 6 HOH B 25 2025 2025 HOH HOH . O 6 HOH B 26 2026 2026 HOH HOH . O 6 HOH B 27 2027 2027 HOH HOH . O 6 HOH B 28 2028 2028 HOH HOH . O 6 HOH B 29 2029 2029 HOH HOH . O 6 HOH B 30 2030 2030 HOH HOH . O 6 HOH B 31 2031 2031 HOH HOH . O 6 HOH B 32 2032 2032 HOH HOH . O 6 HOH B 33 2033 2033 HOH HOH . O 6 HOH B 34 2034 2034 HOH HOH . O 6 HOH B 35 2035 2035 HOH HOH . O 6 HOH B 36 2036 2036 HOH HOH . O 6 HOH B 37 2037 2037 HOH HOH . O 6 HOH B 38 2038 2038 HOH HOH . O 6 HOH B 39 2039 2039 HOH HOH . O 6 HOH B 40 2040 2040 HOH HOH . O 6 HOH B 41 2041 2041 HOH HOH . O 6 HOH B 42 2042 2042 HOH HOH . O 6 HOH B 43 2043 2043 HOH HOH . O 6 HOH B 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . M 4 14.598 43.772 183.181 1 87.85 ? PA NAP 753 B 1 HETATM 2 O O1A NAP . . . M 4 15.768 43.882 182.239 1 88.59 ? O1A NAP 753 B 1 HETATM 3 O O2A NAP . . . M 4 13.936 45.016 183.674 1 88.58 ? O2A NAP 753 B 1 HETATM 4 O O5B NAP . . . M 4 13.407 42.89 182.584 1 87.18 ? O5B NAP 753 B 1 HETATM 5 C C5B NAP . . . M 4 13.515 42.292 181.294 1 85.28 ? C5B NAP 753 B 1 HETATM 6 C C4B NAP . . . M 4 12.313 42.606 180.412 1 84.15 ? C4B NAP 753 B 1 HETATM 7 O O4B NAP . . . M 4 11.033 42.134 180.938 1 82.55 ? O4B NAP 753 B 1 HETATM 8 C C3B NAP . . . M 4 12.034 44.071 180.129 1 83.56 ? C3B NAP 753 B 1 HETATM 9 O O3B NAP . . . M 4 11.705 44.143 178.734 1 82.49 ? O3B NAP 753 B 1 HETATM 10 C C2B NAP . . . M 4 10.921 44.361 181.113 1 83.63 ? C2B NAP 753 B 1 HETATM 11 O O2B NAP . . . M 4 10.188 45.611 180.887 1 84.12 ? O2B NAP 753 B 1 HETATM 12 C C1B NAP . . . M 4 10.077 43.2 180.947 1 82.73 ? C1B NAP 753 B 1 HETATM 13 N N9A NAP . . . M 4 9.064 42.957 182.023 1 82.44 ? N9A NAP 753 B 1 HETATM 14 C C8A NAP . . . M 4 8.756 43.606 183.177 1 82.87 ? C8A NAP 753 B 1 HETATM 15 N N7A NAP . . . M 4 7.733 43.003 183.827 1 82.08 ? N7A NAP 753 B 1 HETATM 16 C C5A NAP . . . M 4 7.423 41.982 183.05 1 81.14 ? C5A NAP 753 B 1 HETATM 17 C C6A NAP . . . M 4 6.415 41.02 183.251 1 80.17 ? C6A NAP 753 B 1 HETATM 18 N N6A NAP . . . M 4 5.612 41.01 184.294 1 78.84 ? N6A NAP 753 B 1 HETATM 19 N N1A NAP . . . M 4 6.275 40.041 182.295 1 81.26 ? N1A NAP 753 B 1 HETATM 20 C C2A NAP . . . M 4 7.077 39.988 181.181 1 82.25 ? C2A NAP 753 B 1 HETATM 21 N N3A NAP . . . M 4 8.049 40.902 180.969 1 81.69 ? N3A NAP 753 B 1 HETATM 22 C C4A NAP . . . M 4 8.238 41.921 181.908 1 81.81 ? C4A NAP 753 B 1 HETATM 23 O O3 NAP . . . M 4 14.939 42.72 184.365 1 88.44 ? O3 NAP 753 B 1 HETATM 24 P PN NAP . . . M 4 16.018 41.567 184.469 1 89.29 ? PN NAP 753 B 1 HETATM 25 O O1N NAP . . . M 4 16.978 41.769 183.365 1 89.34 ? O1N NAP 753 B 1 HETATM 26 O O2N NAP . . . M 4 15.241 40.269 184.522 1 87.74 ? O2N NAP 753 B 1 HETATM 27 O O5D NAP . . . M 4 16.587 42.042 185.874 1 92 ? O5D NAP 753 B 1 HETATM 28 C C5D NAP . . . M 4 15.894 41.83 187.172 1 96.35 ? C5D NAP 753 B 1 HETATM 29 C C4D NAP . . . M 4 16.655 42.393 188.344 1 98.25 ? C4D NAP 753 B 1 HETATM 30 O O4D NAP . . . M 4 16.281 43.76 188.518 1 99.18 ? O4D NAP 753 B 1 HETATM 31 C C3D NAP . . . M 4 16.418 41.686 189.728 1 99.21 ? C3D NAP 753 B 1 HETATM 32 O O3D NAP . . . M 4 17.635 41.126 190.227 1 100.31 ? O3D NAP 753 B 1 HETATM 33 C C2D NAP . . . M 4 15.827 42.733 190.657 1 100 ? C2D NAP 753 B 1 HETATM 34 O O2D NAP . . . M 4 16.516 42.845 191.905 1 99.27 ? O2D NAP 753 B 1 HETATM 35 C C1D NAP . . . M 4 15.821 44.019 189.873 1 99.8 ? C1D NAP 753 B 1 HETATM 36 N N1N NAP . . . M 4 14.507 44.698 189.623 1 98.89 ? N1N NAP 753 B 1 HETATM 37 P P2B NAP . . . M 4 10.282 46.952 181.706 1 84.29 ? P2B NAP 753 B 1 HETATM 38 O O1X NAP . . . M 4 8.922 47.144 182.245 1 83.11 ? O1X NAP 753 B 1 HETATM 39 O O2X NAP . . . M 4 10.732 47.862 180.646 1 83.18 ? O2X NAP 753 B 1 HETATM 40 O O3X NAP . . . M 4 11.315 46.7 182.751 1 84.42 ? O3X NAP 753 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #