data_2BFM
#
_model_server_result.job_id            DyBCYBU9ecmObNcsRkUAxA 
_model_server_result.datetime_utc      '2024-11-06 22:32:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1290}' 
#
_entry.id    2BFM 
#
_exptl.entry_id    2BFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              290.318 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIMETHOPRIM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BFM 
_cell.length_a            94.703 
_cell.length_b            104.443 
_cell.length_c            138.061 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C14 H18 N4 O3' 
_chem_comp.formula_weight    290.318 
_chem_comp.id                TOP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIMETHOPRIM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 TOP doub 388 n y 
C1 C8 TOP sing 389 n y 
C1 H1 TOP sing 390 n n 
N2 C3 TOP sing 391 n y 
C3 N4 TOP sing 392 n n 
C3 N5 TOP doub 393 n y 
N4 HN41 TOP sing 394 n n 
N4 HN42 TOP sing 395 n n 
N5 C6 TOP sing 396 n y 
C6 N7 TOP sing 397 n n 
C6 C8 TOP doub 398 n y 
N7 HN71 TOP sing 399 n n 
N7 HN72 TOP sing 400 n n 
C8 C9 TOP sing 401 n n 
C9 C10 TOP sing 402 n n 
C9 H91 TOP sing 403 n n 
C9 H92 TOP sing 404 n n 
C10 C11 TOP doub 405 n y 
C10 C21 TOP sing 406 n y 
C11 C12 TOP sing 407 n y 
C11 H11 TOP sing 408 n n 
C12 O13 TOP sing 409 n n 
C12 C15 TOP doub 410 n y 
O13 C14 TOP sing 411 n n 
C14 H141 TOP sing 412 n n 
C14 H142 TOP sing 413 n n 
C14 H143 TOP sing 414 n n 
C15 O16 TOP sing 415 n n 
C15 C18 TOP sing 416 n y 
O16 C17 TOP sing 417 n n 
C17 H171 TOP sing 418 n n 
C17 H172 TOP sing 419 n n 
C17 H173 TOP sing 420 n n 
C18 O19 TOP sing 421 n n 
C18 C21 TOP doub 422 n y 
O19 C20 TOP sing 423 n n 
C20 H201 TOP sing 424 n n 
C20 H202 TOP sing 425 n n 
C20 H203 TOP sing 426 n n 
C21 H21 TOP sing 427 n n 
#
_atom_sites.entry_id                     2BFM 
_atom_sites.fract_transf_matrix[1][1]    0.010559 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007243 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 1289 1289 NDP NDP . 
F 3 TOP A 1 1290 1290 TOP TOP . 
G 2 NDP B 1 1289 1289 NDP NDP . 
H 3 TOP B 1 1290 1290 TOP TOP . 
I 2 NDP C 1 1289 1289 NDP NDP . 
J 2 NDP D 1 1289 1289 NDP NDP . 
K 4 HOH A 1 2001 2001 HOH HOH . 
K 4 HOH A 2 2002 2002 HOH HOH . 
K 4 HOH A 3 2003 2003 HOH HOH . 
K 4 HOH A 4 2004 2004 HOH HOH . 
K 4 HOH A 5 2005 2005 HOH HOH . 
K 4 HOH A 6 2006 2006 HOH HOH . 
K 4 HOH A 7 2007 2007 HOH HOH . 
K 4 HOH A 8 2008 2008 HOH HOH . 
K 4 HOH A 9 2009 2009 HOH HOH . 
K 4 HOH A 10 2010 2010 HOH HOH . 
K 4 HOH A 11 2011 2011 HOH HOH . 
K 4 HOH A 12 2012 2012 HOH HOH . 
K 4 HOH A 13 2013 2013 HOH HOH . 
K 4 HOH A 14 2014 2014 HOH HOH . 
K 4 HOH A 15 2015 2015 HOH HOH . 
K 4 HOH A 16 2016 2016 HOH HOH . 
K 4 HOH A 17 2017 2017 HOH HOH . 
K 4 HOH A 18 2018 2018 HOH HOH . 
K 4 HOH A 19 2019 2019 HOH HOH . 
K 4 HOH A 20 2020 2020 HOH HOH . 
K 4 HOH A 21 2021 2021 HOH HOH . 
K 4 HOH A 22 2022 2022 HOH HOH . 
K 4 HOH A 23 2023 2023 HOH HOH . 
K 4 HOH A 24 2024 2024 HOH HOH . 
K 4 HOH A 25 2025 2025 HOH HOH . 
K 4 HOH A 26 2026 2026 HOH HOH . 
K 4 HOH A 27 2027 2027 HOH HOH . 
K 4 HOH A 28 2028 2028 HOH HOH . 
K 4 HOH A 29 2029 2029 HOH HOH . 
K 4 HOH A 30 2030 2030 HOH HOH . 
K 4 HOH A 31 2031 2031 HOH HOH . 
K 4 HOH A 32 2032 2032 HOH HOH . 
K 4 HOH A 33 2033 2033 HOH HOH . 
K 4 HOH A 34 2034 2034 HOH HOH . 
K 4 HOH A 35 2035 2035 HOH HOH . 
K 4 HOH A 36 2036 2036 HOH HOH . 
K 4 HOH A 37 2037 2037 HOH HOH . 
K 4 HOH A 38 2038 2038 HOH HOH . 
K 4 HOH A 39 2039 2039 HOH HOH . 
K 4 HOH A 40 2040 2040 HOH HOH . 
K 4 HOH A 41 2041 2041 HOH HOH . 
K 4 HOH A 42 2042 2042 HOH HOH . 
K 4 HOH A 43 2043 2043 HOH HOH . 
K 4 HOH A 44 2044 2044 HOH HOH . 
K 4 HOH A 45 2045 2045 HOH HOH . 
K 4 HOH A 46 2046 2046 HOH HOH . 
K 4 HOH A 47 2047 2047 HOH HOH . 
K 4 HOH A 48 2048 2048 HOH HOH . 
K 4 HOH A 49 2049 2049 HOH HOH . 
K 4 HOH A 50 2050 2050 HOH HOH . 
K 4 HOH A 51 2051 2051 HOH HOH . 
K 4 HOH A 52 2052 2052 HOH HOH . 
K 4 HOH A 53 2053 2053 HOH HOH . 
K 4 HOH A 54 2054 2054 HOH HOH . 
K 4 HOH A 55 2055 2055 HOH HOH . 
K 4 HOH A 56 2056 2056 HOH HOH . 
K 4 HOH A 57 2057 2057 HOH HOH . 
K 4 HOH A 58 2058 2058 HOH HOH . 
K 4 HOH A 59 2059 2059 HOH HOH . 
K 4 HOH A 60 2060 2060 HOH HOH . 
L 4 HOH B 1 2001 2001 HOH HOH . 
L 4 HOH B 2 2002 2002 HOH HOH . 
L 4 HOH B 3 2003 2003 HOH HOH . 
L 4 HOH B 4 2004 2004 HOH HOH . 
L 4 HOH B 5 2005 2005 HOH HOH . 
L 4 HOH B 6 2006 2006 HOH HOH . 
L 4 HOH B 7 2007 2007 HOH HOH . 
L 4 HOH B 8 2008 2008 HOH HOH . 
L 4 HOH B 9 2009 2009 HOH HOH . 
L 4 HOH B 10 2010 2010 HOH HOH . 
L 4 HOH B 11 2011 2011 HOH HOH . 
L 4 HOH B 12 2012 2012 HOH HOH . 
L 4 HOH B 13 2013 2013 HOH HOH . 
L 4 HOH B 14 2014 2014 HOH HOH . 
L 4 HOH B 15 2015 2015 HOH HOH . 
L 4 HOH B 16 2016 2016 HOH HOH . 
L 4 HOH B 17 2017 2017 HOH HOH . 
L 4 HOH B 18 2018 2018 HOH HOH . 
L 4 HOH B 19 2019 2019 HOH HOH . 
L 4 HOH B 20 2020 2020 HOH HOH . 
L 4 HOH B 21 2021 2021 HOH HOH . 
L 4 HOH B 22 2022 2022 HOH HOH . 
L 4 HOH B 23 2023 2023 HOH HOH . 
L 4 HOH B 24 2024 2024 HOH HOH . 
L 4 HOH B 25 2025 2025 HOH HOH . 
L 4 HOH B 26 2026 2026 HOH HOH . 
L 4 HOH B 27 2027 2027 HOH HOH . 
L 4 HOH B 28 2028 2028 HOH HOH . 
L 4 HOH B 29 2029 2029 HOH HOH . 
L 4 HOH B 30 2030 2030 HOH HOH . 
L 4 HOH B 31 2031 2031 HOH HOH . 
L 4 HOH B 32 2032 2032 HOH HOH . 
L 4 HOH B 33 2033 2033 HOH HOH . 
L 4 HOH B 34 2034 2034 HOH HOH . 
L 4 HOH B 35 2035 2035 HOH HOH . 
L 4 HOH B 36 2036 2036 HOH HOH . 
L 4 HOH B 37 2037 2037 HOH HOH . 
L 4 HOH B 38 2038 2038 HOH HOH . 
L 4 HOH B 39 2039 2039 HOH HOH . 
L 4 HOH B 40 2040 2040 HOH HOH . 
L 4 HOH B 41 2041 2041 HOH HOH . 
L 4 HOH B 42 2042 2042 HOH HOH . 
L 4 HOH B 43 2043 2043 HOH HOH . 
L 4 HOH B 44 2044 2044 HOH HOH . 
L 4 HOH B 45 2045 2045 HOH HOH . 
M 4 HOH C 1 2001 2001 HOH HOH . 
M 4 HOH C 2 2002 2002 HOH HOH . 
M 4 HOH C 3 2003 2003 HOH HOH . 
M 4 HOH C 4 2004 2004 HOH HOH . 
M 4 HOH C 5 2005 2005 HOH HOH . 
M 4 HOH C 6 2006 2006 HOH HOH . 
M 4 HOH C 7 2007 2007 HOH HOH . 
M 4 HOH C 8 2008 2008 HOH HOH . 
M 4 HOH C 9 2009 2009 HOH HOH . 
M 4 HOH C 10 2010 2010 HOH HOH . 
M 4 HOH C 11 2011 2011 HOH HOH . 
M 4 HOH C 12 2012 2012 HOH HOH . 
M 4 HOH C 13 2013 2013 HOH HOH . 
M 4 HOH C 14 2014 2014 HOH HOH . 
M 4 HOH C 15 2015 2015 HOH HOH . 
M 4 HOH C 16 2016 2016 HOH HOH . 
M 4 HOH C 17 2017 2017 HOH HOH . 
M 4 HOH C 18 2018 2018 HOH HOH . 
M 4 HOH C 19 2019 2019 HOH HOH . 
M 4 HOH C 20 2020 2020 HOH HOH . 
M 4 HOH C 21 2021 2021 HOH HOH . 
M 4 HOH C 22 2022 2022 HOH HOH . 
M 4 HOH C 23 2023 2023 HOH HOH . 
M 4 HOH C 24 2024 2024 HOH HOH . 
M 4 HOH C 25 2025 2025 HOH HOH . 
M 4 HOH C 26 2026 2026 HOH HOH . 
M 4 HOH C 27 2027 2027 HOH HOH . 
M 4 HOH C 28 2028 2028 HOH HOH . 
M 4 HOH C 29 2029 2029 HOH HOH . 
M 4 HOH C 30 2030 2030 HOH HOH . 
M 4 HOH C 31 2031 2031 HOH HOH . 
M 4 HOH C 32 2032 2032 HOH HOH . 
M 4 HOH C 33 2033 2033 HOH HOH . 
M 4 HOH C 34 2034 2034 HOH HOH . 
M 4 HOH C 35 2035 2035 HOH HOH . 
M 4 HOH C 36 2036 2036 HOH HOH . 
M 4 HOH C 37 2037 2037 HOH HOH . 
M 4 HOH C 38 2038 2038 HOH HOH . 
M 4 HOH C 39 2039 2039 HOH HOH . 
M 4 HOH C 40 2040 2040 HOH HOH . 
M 4 HOH C 41 2041 2041 HOH HOH . 
M 4 HOH C 42 2042 2042 HOH HOH . 
M 4 HOH C 43 2043 2043 HOH HOH . 
M 4 HOH C 44 2044 2044 HOH HOH . 
N 4 HOH D 1 2001 2001 HOH HOH . 
N 4 HOH D 2 2002 2002 HOH HOH . 
N 4 HOH D 3 2003 2003 HOH HOH . 
N 4 HOH D 4 2004 2004 HOH HOH . 
N 4 HOH D 5 2005 2005 HOH HOH . 
N 4 HOH D 6 2006 2006 HOH HOH . 
N 4 HOH D 7 2007 2007 HOH HOH . 
N 4 HOH D 8 2008 2008 HOH HOH . 
N 4 HOH D 9 2009 2009 HOH HOH . 
N 4 HOH D 10 2010 2010 HOH HOH . 
N 4 HOH D 11 2011 2011 HOH HOH . 
N 4 HOH D 12 2012 2012 HOH HOH . 
N 4 HOH D 13 2013 2013 HOH HOH . 
N 4 HOH D 14 2014 2014 HOH HOH . 
N 4 HOH D 15 2015 2015 HOH HOH . 
N 4 HOH D 16 2016 2016 HOH HOH . 
N 4 HOH D 17 2017 2017 HOH HOH . 
N 4 HOH D 18 2018 2018 HOH HOH . 
N 4 HOH D 19 2019 2019 HOH HOH . 
N 4 HOH D 20 2020 2020 HOH HOH . 
N 4 HOH D 21 2021 2021 HOH HOH . 
N 4 HOH D 22 2022 2022 HOH HOH . 
N 4 HOH D 23 2023 2023 HOH HOH . 
N 4 HOH D 24 2024 2024 HOH HOH . 
N 4 HOH D 25 2025 2025 HOH HOH . 
N 4 HOH D 26 2026 2026 HOH HOH . 
N 4 HOH D 27 2027 2027 HOH HOH . 
N 4 HOH D 28 2028 2028 HOH HOH . 
N 4 HOH D 29 2029 2029 HOH HOH . 
N 4 HOH D 30 2030 2030 HOH HOH . 
N 4 HOH D 31 2031 2031 HOH HOH . 
N 4 HOH D 32 2032 2032 HOH HOH . 
N 4 HOH D 33 2033 2033 HOH HOH . 
N 4 HOH D 34 2034 2034 HOH HOH . 
N 4 HOH D 35 2035 2035 HOH HOH . 
N 4 HOH D 36 2036 2036 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TOP . . . H 3 27.263 34.593 72.889 1 50.78 ? C1 TOP 1290 B 1 
HETATM 2 N N2 TOP . . . H 3 26.358 33.708 73.345 1 50.8 ? N2 TOP 1290 B 1 
HETATM 3 C C3 TOP . . . H 3 26.679 32.784 74.298 1 50.45 ? C3 TOP 1290 B 1 
HETATM 4 N N4 TOP . . . H 3 25.746 31.905 74.752 1 48.9 ? N4 TOP 1290 B 1 
HETATM 5 N N5 TOP . . . H 3 27.938 32.739 74.805 1 50.92 ? N5 TOP 1290 B 1 
HETATM 6 C C6 TOP . . . H 3 28.881 33.61 74.369 1 51.5 ? C6 TOP 1290 B 1 
HETATM 7 N N7 TOP . . . H 3 30.136 33.554 74.885 1 52.47 ? N7 TOP 1290 B 1 
HETATM 8 C C8 TOP . . . H 3 28.559 34.549 73.396 1 51.67 ? C8 TOP 1290 B 1 
HETATM 9 C C9 TOP . . . H 3 29.59 35.542 72.916 1 53.04 ? C9 TOP 1290 B 1 
HETATM 10 C C10 TOP . . . H 3 30.462 35.087 71.773 1 54.19 ? C10 TOP 1290 B 1 
HETATM 11 C C11 TOP . . . H 3 31.099 33.848 71.781 1 55.16 ? C11 TOP 1290 B 1 
HETATM 12 C C12 TOP . . . H 3 31.9 33.472 70.702 1 56.95 ? C12 TOP 1290 B 1 
HETATM 13 O O13 TOP . . . H 3 32.467 32.344 70.744 1 58.56 ? O13 TOP 1290 B 1 
HETATM 14 C C14 TOP . . . H 3 31.923 31.158 70.159 1 58.33 ? C14 TOP 1290 B 1 
HETATM 15 C C15 TOP . . . H 3 32.085 34.362 69.623 1 57.16 ? C15 TOP 1290 B 1 
HETATM 16 O O16 TOP . . . H 3 32.807 34.032 68.634 1 58.82 ? O16 TOP 1290 B 1 
HETATM 17 C C17 TOP . . . H 3 34.211 34.326 68.543 1 59.1 ? C17 TOP 1290 B 1 
HETATM 18 C C18 TOP . . . H 3 31.449 35.613 69.623 1 55.91 ? C18 TOP 1290 B 1 
HETATM 19 O O19 TOP . . . H 3 31.603 36.419 68.661 1 55.81 ? O19 TOP 1290 B 1 
HETATM 20 C C20 TOP . . . H 3 31.16 37.785 68.72 1 56.4 ? C20 TOP 1290 B 1 
HETATM 21 C C21 TOP . . . H 3 30.639 35.962 70.707 1 54.81 ? C21 TOP 1290 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#