data_2BFV # _model_server_result.job_id BFZhRagxxJNXAdxqAKgOkQ _model_server_result.datetime_utc '2025-03-05 18:14:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 2BFV # _exptl.entry_id 2BFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ESTRIOL 3-(B-D-GLUCURONIDE)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BFV _cell.length_a 53.6 _cell.length_b 53.6 _cell.length_c 83.8 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C24 H32 O9' _chem_comp.formula_weight 464.505 _chem_comp.id STG _chem_comp.mon_nstd_flag . _chem_comp.name 'ESTRIOL 3-(B-D-GLUCURONIDE)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STG doub 290 n y C1 C10 STG sing 291 n y C1 H1 STG sing 292 n n C2 C3 STG sing 293 n y C2 H2 STG sing 294 n n C3 C4 STG doub 295 n y C3 O20 STG sing 296 n n C4 C5 STG sing 297 n y C4 H4 STG sing 298 n n C5 C6 STG sing 299 n n C5 C10 STG doub 300 n y C6 C7 STG sing 301 n n C6 H61 STG sing 302 n n C6 H62 STG sing 303 n n C7 C8 STG sing 304 n n C7 H71 STG sing 305 n n C7 H72 STG sing 306 n n C8 C9 STG sing 307 n n C8 C14 STG sing 308 n n C8 H8 STG sing 309 n n C9 C10 STG sing 310 n n C9 C11 STG sing 311 n n C9 H9 STG sing 312 n n C11 C12 STG sing 313 n n C11 H111 STG sing 314 n n C11 H112 STG sing 315 n n C12 C13 STG sing 316 n n C12 H121 STG sing 317 n n C12 H122 STG sing 318 n n C13 C14 STG sing 319 n n C13 C17 STG sing 320 n n C13 C18 STG sing 321 n n C14 C15 STG sing 322 n n C14 H14 STG sing 323 n n C15 C16 STG sing 324 n n C15 H151 STG sing 325 n n C15 H152 STG sing 326 n n C16 C17 STG sing 327 n n C16 O33 STG sing 328 n n C16 H16 STG sing 329 n n C17 O19 STG sing 330 n n C17 H17 STG sing 331 n n C18 H181 STG sing 332 n n C18 H182 STG sing 333 n n C18 H183 STG sing 334 n n O19 HO1 STG sing 335 n n O20 C21 STG sing 336 n n C21 C22 STG sing 337 n n C21 O27 STG sing 338 n n C21 H21 STG sing 339 n n C22 C23 STG sing 340 n n C22 O28 STG sing 341 n n C22 H22 STG sing 342 n n C23 C24 STG sing 343 n n C23 O29 STG sing 344 n n C23 H23 STG sing 345 n n C24 C25 STG sing 346 n n C24 O30 STG sing 347 n n C24 H24 STG sing 348 n n C25 C26 STG sing 349 n n C25 O27 STG sing 350 n n C25 H25 STG sing 351 n n C26 O31 STG doub 352 n n C26 O32 STG sing 353 n n O28 HO8 STG sing 354 n n O29 HO9 STG sing 355 n n O30 HO3 STG sing 356 n n O32 HO2 STG sing 357 n n O33 HO0 STG sing 358 n n # _atom_sites.entry_id 2BFV _atom_sites.fract_transf_matrix[1][1] 0.018657 _atom_sites.fract_transf_matrix[1][2] 0.010771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 STG H 1 200 200 STG STG . D 4 HOH L 1 114 200 HOH HOH . D 4 HOH L 2 115 201 HOH HOH . D 4 HOH L 3 116 202 HOH HOH . D 4 HOH L 4 117 203 HOH HOH . D 4 HOH L 5 118 204 HOH HOH . D 4 HOH L 6 119 205 HOH HOH . D 4 HOH L 7 120 206 HOH HOH . D 4 HOH L 8 121 207 HOH HOH . D 4 HOH L 9 122 208 HOH HOH . D 4 HOH L 10 123 209 HOH HOH . D 4 HOH L 11 124 210 HOH HOH . D 4 HOH L 12 125 211 HOH HOH . D 4 HOH L 13 126 212 HOH HOH . D 4 HOH L 14 127 213 HOH HOH . D 4 HOH L 15 128 214 HOH HOH . D 4 HOH L 16 129 215 HOH HOH . D 4 HOH L 17 130 216 HOH HOH . D 4 HOH L 18 131 217 HOH HOH . D 4 HOH L 19 132 218 HOH HOH . D 4 HOH L 20 133 219 HOH HOH . D 4 HOH L 21 134 220 HOH HOH . D 4 HOH L 22 135 221 HOH HOH . D 4 HOH L 23 136 222 HOH HOH . D 4 HOH L 24 137 223 HOH HOH . D 4 HOH L 25 138 224 HOH HOH . D 4 HOH L 26 139 225 HOH HOH . D 4 HOH L 27 140 226 HOH HOH . E 4 HOH H 1 201 300 HOH HOH . E 4 HOH H 2 202 301 HOH HOH . E 4 HOH H 3 203 302 HOH HOH . E 4 HOH H 4 204 303 HOH HOH . E 4 HOH H 5 205 304 HOH HOH . E 4 HOH H 6 206 305 HOH HOH . E 4 HOH H 7 207 306 HOH HOH . E 4 HOH H 8 208 307 HOH HOH . E 4 HOH H 9 209 308 HOH HOH . E 4 HOH H 10 210 309 HOH HOH . E 4 HOH H 11 211 310 HOH HOH . E 4 HOH H 12 212 311 HOH HOH . E 4 HOH H 13 213 312 HOH HOH . E 4 HOH H 14 214 313 HOH HOH . E 4 HOH H 15 215 314 HOH HOH . E 4 HOH H 16 216 315 HOH HOH . E 4 HOH H 17 217 316 HOH HOH . E 4 HOH H 18 218 317 HOH HOH . E 4 HOH H 19 219 318 HOH HOH . E 4 HOH H 20 220 319 HOH HOH . E 4 HOH H 21 221 320 HOH HOH . E 4 HOH H 22 222 321 HOH HOH . E 4 HOH H 23 223 322 HOH HOH . E 4 HOH H 24 224 323 HOH HOH . E 4 HOH H 25 225 324 HOH HOH . E 4 HOH H 26 226 325 HOH HOH . E 4 HOH H 27 227 326 HOH HOH . E 4 HOH H 28 228 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STG . . . C 3 -13.442 14.216 3.197 1 24.5 ? C1 STG 200 H 1 HETATM 2 C C2 STG . . . C 3 -13.447 13.118 4.031 1 23.73 ? C2 STG 200 H 1 HETATM 3 C C3 STG . . . C 3 -14.51 12.25 3.976 1 23.86 ? C3 STG 200 H 1 HETATM 4 C C4 STG . . . C 3 -15.58 12.452 3.113 1 24.18 ? C4 STG 200 H 1 HETATM 5 C C5 STG . . . C 3 -15.56 13.581 2.262 1 24.61 ? C5 STG 200 H 1 HETATM 6 C C6 STG . . . C 3 -16.725 13.772 1.33 1 24.31 ? C6 STG 200 H 1 HETATM 7 C C7 STG . . . C 3 -16.497 14.672 0.174 1 25.15 ? C7 STG 200 H 1 HETATM 8 C C8 STG . . . C 3 -15.018 15.099 -0.017 1 26.38 ? C8 STG 200 H 1 HETATM 9 C C9 STG . . . C 3 -14.49 15.679 1.342 1 25.43 ? C9 STG 200 H 1 HETATM 10 C C10 STG . . . C 3 -14.483 14.491 2.298 1 24.63 ? C10 STG 200 H 1 HETATM 11 C C11 STG . . . C 3 -13.074 16.309 1.133 1 26.23 ? C11 STG 200 H 1 HETATM 12 C C12 STG . . . C 3 -13.157 17.453 0.097 1 28.03 ? C12 STG 200 H 1 HETATM 13 C C13 STG . . . C 3 -13.592 16.901 -1.257 1 28.69 ? C13 STG 200 H 1 HETATM 14 C C14 STG . . . C 3 -14.964 16.198 -1.059 1 27.92 ? C14 STG 200 H 1 HETATM 15 C C15 STG . . . C 3 -15.382 15.797 -2.497 1 28.47 ? C15 STG 200 H 1 HETATM 16 C C16 STG . . . C 3 -14.878 16.999 -3.328 1 29.22 ? C16 STG 200 H 1 HETATM 17 C C17 STG . . . C 3 -14.046 17.874 -2.379 1 29.43 ? C17 STG 200 H 1 HETATM 18 C C18 STG . . . C 3 -12.493 16.006 -1.847 1 28.43 ? C18 STG 200 H 1 HETATM 19 O O19 STG . . . C 3 -12.997 18.59 -3.026 1 30.01 ? O19 STG 200 H 1 HETATM 20 O O20 STG . . . C 3 -14.475 11.162 4.815 1 24.99 ? O20 STG 200 H 1 HETATM 21 C C21 STG . . . C 3 -15.517 10.162 4.589 1 23.93 ? C21 STG 200 H 1 HETATM 22 C C22 STG . . . C 3 -15.023 8.867 5.285 1 23.11 ? C22 STG 200 H 1 HETATM 23 C C23 STG . . . C 3 -16.173 7.863 5.502 1 22.84 ? C23 STG 200 H 1 HETATM 24 C C24 STG . . . C 3 -17.448 8.505 6.126 1 23.76 ? C24 STG 200 H 1 HETATM 25 C C25 STG . . . C 3 -17.808 9.804 5.35 1 25.5 ? C25 STG 200 H 1 HETATM 26 C C26 STG . . . C 3 -18.98 10.533 5.994 1 26.44 ? C26 STG 200 H 1 HETATM 27 O O27 STG . . . C 3 -16.645 10.685 5.371 1 25.07 ? O27 STG 200 H 1 HETATM 28 O O28 STG . . . C 3 -13.996 8.245 4.515 1 22.14 ? O28 STG 200 H 1 HETATM 29 O O29 STG . . . C 3 -15.834 6.717 6.225 1 21.95 ? O29 STG 200 H 1 HETATM 30 O O30 STG . . . C 3 -18.473 7.536 5.984 1 24.23 ? O30 STG 200 H 1 HETATM 31 O O31 STG . . . C 3 -19.007 11.943 6.189 1 29.24 ? O31 STG 200 H 1 HETATM 32 O O32 STG . . . C 3 -20.124 9.853 6.438 1 29.49 ? O32 STG 200 H 1 HETATM 33 O O33 STG . . . C 3 -15.991 17.721 -3.899 1 31 ? O33 STG 200 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 33 #