data_2BGL
#
_model_server_result.job_id            zxcD2hY5_m1YE0dLrnOtyA 
_model_server_result.datetime_utc      '2024-11-26 01:42:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bgl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1300}' 
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_entry.id    2BGL 
#
_exptl.entry_id    2BGL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BGL 
_cell.length_a            58.51 
_cell.length_b            118.91 
_cell.length_c            132 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'F 2 2 2' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 59.455 66 
3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 29.255 0 66 
4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 29.255 59.455 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAJ doub 237 n n 
PA O2A NAJ sing 238 n n 
PA O5B NAJ sing 239 n n 
PA O3 NAJ sing 240 n n 
O5B C5B NAJ sing 241 n n 
C5B C4B NAJ sing 242 n n 
C5B H51A NAJ sing 243 n n 
C5B H52A NAJ sing 244 n n 
C4B O4B NAJ sing 245 n n 
C4B C3B NAJ sing 246 n n 
C4B H4B NAJ sing 247 n n 
O4B C1B NAJ sing 248 n n 
C3B O3B NAJ sing 249 n n 
C3B C2B NAJ sing 250 n n 
C3B H3B NAJ sing 251 n n 
O3B HO3A NAJ sing 252 n n 
C2B O2B NAJ sing 253 n n 
C2B C1B NAJ sing 254 n n 
C2B H2B NAJ sing 255 n n 
O2B HO2A NAJ sing 256 n n 
C1B N9A NAJ sing 257 n n 
C1B H1B NAJ sing 258 n n 
N9A C8A NAJ sing 259 n y 
N9A C4A NAJ sing 260 n y 
C8A N7A NAJ doub 261 n y 
C8A H8A NAJ sing 262 n n 
N7A C5A NAJ sing 263 n y 
C5A C6A NAJ sing 264 n y 
C5A C4A NAJ doub 265 n y 
C6A N6A NAJ sing 266 n n 
C6A N1A NAJ doub 267 n y 
N6A H61A NAJ sing 268 n n 
N6A H62A NAJ sing 269 n n 
N1A C2A NAJ sing 270 n y 
N1A H1A NAJ sing 271 n n 
C2A N3A NAJ doub 272 n y 
C2A H2A NAJ sing 273 n n 
N3A C4A NAJ sing 274 n y 
O3 PN NAJ sing 275 n n 
PN O1N NAJ doub 276 n n 
PN O2N NAJ sing 277 n n 
PN O5D NAJ sing 278 n n 
O5D C5D NAJ sing 279 n n 
C5D C4D NAJ sing 280 n n 
C5D H51N NAJ sing 281 n n 
C5D H52N NAJ sing 282 n n 
C4D O4D NAJ sing 283 n n 
C4D C3D NAJ sing 284 n n 
C4D H4D NAJ sing 285 n n 
O4D C1D NAJ sing 286 n n 
C3D O3D NAJ sing 287 n n 
C3D C2D NAJ sing 288 n n 
C3D H3D NAJ sing 289 n n 
O3D HO3N NAJ sing 290 n n 
C2D O2D NAJ sing 291 n n 
C2D C1D NAJ sing 292 n n 
C2D H2D NAJ sing 293 n n 
O2D HO2N NAJ sing 294 n n 
C1D N1N NAJ sing 295 n n 
C1D H1D NAJ sing 296 n n 
N1N C2N NAJ sing 297 n y 
N1N C6N NAJ doub 298 n y 
C2N C3N NAJ doub 299 n y 
C2N H2N NAJ sing 300 n n 
C3N C7N NAJ sing 301 n n 
C3N C4N NAJ sing 302 n y 
C7N O7N NAJ doub 303 n n 
C7N N7N NAJ sing 304 n n 
N7N H71N NAJ sing 305 n n 
N7N H72N NAJ sing 306 n n 
C4N C5N NAJ doub 307 n y 
C4N H4N NAJ sing 308 n n 
C5N C6N NAJ sing 309 n y 
C5N H5N NAJ sing 310 n n 
C6N H6N NAJ sing 311 n n 
#
_atom_sites.entry_id                     2BGL 
_atom_sites.fract_transf_matrix[1][1]    0.017091 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAJ A 1 1300 1300 NAJ NAJ . 
C 3 HOH A 1 2001 2001 HOH HOH . 
C 3 HOH A 2 2002 2002 HOH HOH . 
C 3 HOH A 3 2003 2003 HOH HOH . 
C 3 HOH A 4 2004 2004 HOH HOH . 
C 3 HOH A 5 2005 2005 HOH HOH . 
C 3 HOH A 6 2006 2006 HOH HOH . 
C 3 HOH A 7 2007 2007 HOH HOH . 
C 3 HOH A 8 2008 2008 HOH HOH . 
C 3 HOH A 9 2009 2009 HOH HOH . 
C 3 HOH A 10 2010 2010 HOH HOH . 
C 3 HOH A 11 2011 2011 HOH HOH . 
C 3 HOH A 12 2012 2012 HOH HOH . 
C 3 HOH A 13 2013 2013 HOH HOH . 
C 3 HOH A 14 2014 2014 HOH HOH . 
C 3 HOH A 15 2015 2015 HOH HOH . 
C 3 HOH A 16 2016 2016 HOH HOH . 
C 3 HOH A 17 2017 2017 HOH HOH . 
C 3 HOH A 18 2018 2018 HOH HOH . 
C 3 HOH A 19 2019 2019 HOH HOH . 
C 3 HOH A 20 2020 2020 HOH HOH . 
C 3 HOH A 21 2021 2021 HOH HOH . 
C 3 HOH A 22 2022 2022 HOH HOH . 
C 3 HOH A 23 2023 2023 HOH HOH . 
C 3 HOH A 24 2024 2024 HOH HOH . 
C 3 HOH A 25 2025 2025 HOH HOH . 
C 3 HOH A 26 2026 2026 HOH HOH . 
C 3 HOH A 27 2027 2027 HOH HOH . 
C 3 HOH A 28 2028 2028 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAJ . . . B 2 2.991 10.32 16.701 1 40.15 ? PA NAJ 1300 A 1 
HETATM 2 O O1A NAJ . . . B 2 2.96 9.434 17.892 1 39.83 ? O1A NAJ 1300 A 1 
HETATM 3 O O2A NAJ . . . B 2 1.933 10.193 15.668 1 36.8 ? O2A NAJ 1300 A 1 
HETATM 4 O O5B NAJ . . . B 2 4.419 10.266 15.918 1 39.27 ? O5B NAJ 1300 A 1 
HETATM 5 C C5B NAJ . . . B 2 5.591 9.691 16.537 1 43.2 ? C5B NAJ 1300 A 1 
HETATM 6 C C4B NAJ . . . B 2 5.965 8.276 16.066 1 37.42 ? C4B NAJ 1300 A 1 
HETATM 7 O O4B NAJ . . . B 2 6.694 7.614 17.118 1 32.05 ? O4B NAJ 1300 A 1 
HETATM 8 C C3B NAJ . . . B 2 4.804 7.324 15.75 1 28.84 ? C3B NAJ 1300 A 1 
HETATM 9 O O3B NAJ . . . B 2 4.885 6.841 14.398 1 23.45 ? O3B NAJ 1300 A 1 
HETATM 10 C C2B NAJ . . . B 2 4.963 6.185 16.745 1 24.44 ? C2B NAJ 1300 A 1 
HETATM 11 O O2B NAJ . . . B 2 4.445 4.971 16.192 1 30.8 ? O2B NAJ 1300 A 1 
HETATM 12 C C1B NAJ . . . B 2 6.464 6.229 16.866 1 23.91 ? C1B NAJ 1300 A 1 
HETATM 13 N N9A NAJ . . . B 2 7.137 5.333 17.824 1 17.19 ? N9A NAJ 1300 A 1 
HETATM 14 C C8A NAJ . . . B 2 6.791 5.08 19.098 1 14.21 ? C8A NAJ 1300 A 1 
HETATM 15 N N7A NAJ . . . B 2 7.727 4.329 19.693 1 21.18 ? N7A NAJ 1300 A 1 
HETATM 16 C C5A NAJ . . . B 2 8.643 4.131 18.749 1 16.75 ? C5A NAJ 1300 A 1 
HETATM 17 C C6A NAJ . . . B 2 9.861 3.49 18.927 1 9.96 ? C6A NAJ 1300 A 1 
HETATM 18 N N6A NAJ . . . B 2 10.211 2.974 20.101 1 17.15 ? N6A NAJ 1300 A 1 
HETATM 19 N N1A NAJ . . . B 2 10.707 3.498 17.874 1 4.07 ? N1A NAJ 1300 A 1 
HETATM 20 C C2A NAJ . . . B 2 10.384 4.088 16.72 1 8.88 ? C2A NAJ 1300 A 1 
HETATM 21 N N3A NAJ . . . B 2 9.209 4.704 16.554 1 11.53 ? N3A NAJ 1300 A 1 
HETATM 22 C C4A NAJ . . . B 2 8.311 4.75 17.568 1 16.14 ? C4A NAJ 1300 A 1 
HETATM 23 O O3 NAJ . . . B 2 2.985 11.797 17.339 1 35.01 ? O3 NAJ 1300 A 1 
HETATM 24 P PN NAJ . . . B 2 3.65 13.212 16.986 1 27.04 ? PN NAJ 1300 A 1 
HETATM 25 O O1N NAJ . . . B 2 2.963 14.198 17.841 1 24.95 ? O1N NAJ 1300 A 1 
HETATM 26 O O2N NAJ . . . B 2 3.619 13.424 15.521 1 31.29 ? O2N NAJ 1300 A 1 
HETATM 27 O O5D NAJ . . . B 2 5.16 12.967 17.477 1 17.87 ? O5D NAJ 1300 A 1 
HETATM 28 C C5D NAJ . . . B 2 5.404 12.97 18.888 1 21.48 ? C5D NAJ 1300 A 1 
HETATM 29 C C4D NAJ . . . B 2 6.528 13.923 19.286 1 20.04 ? C4D NAJ 1300 A 1 
HETATM 30 O O4D NAJ . . . B 2 6.132 15.315 19.245 1 21.35 ? O4D NAJ 1300 A 1 
HETATM 31 C C3D NAJ . . . B 2 6.924 13.634 20.715 1 15.97 ? C3D NAJ 1300 A 1 
HETATM 32 O O3D NAJ . . . B 2 8.331 13.821 20.943 1 4.03 ? O3D NAJ 1300 A 1 
HETATM 33 C C2D NAJ . . . B 2 6.032 14.582 21.473 1 17.57 ? C2D NAJ 1300 A 1 
HETATM 34 O O2D NAJ . . . B 2 6.669 14.781 22.729 1 30.02 ? O2D NAJ 1300 A 1 
HETATM 35 C C1D NAJ . . . B 2 6.011 15.829 20.592 1 27.91 ? C1D NAJ 1300 A 1 
HETATM 36 N N1N NAJ . . . B 2 4.803 16.707 20.757 1 40.66 ? N1N NAJ 1300 A 1 
HETATM 37 C C2N NAJ . . . B 2 3.647 16.498 19.975 1 38.46 ? C2N NAJ 1300 A 1 
HETATM 38 C C3N NAJ . . . B 2 2.458 17.182 20.224 1 38.18 ? C3N NAJ 1300 A 1 
HETATM 39 C C7N NAJ . . . B 2 1.318 17.023 19.22 1 45.48 ? C7N NAJ 1300 A 1 
HETATM 40 O O7N NAJ . . . B 2 1.547 16.587 18.093 1 50.98 ? O7N NAJ 1300 A 1 
HETATM 41 N N7N NAJ . . . B 2 0.109 17.396 19.637 1 51.39 ? N7N NAJ 1300 A 1 
HETATM 42 C C4N NAJ . . . B 2 2.392 18.099 21.276 1 36.85 ? C4N NAJ 1300 A 1 
HETATM 43 C C5N NAJ . . . B 2 3.526 18.361 22.047 1 37.53 ? C5N NAJ 1300 A 1 
HETATM 44 C C6N NAJ . . . B 2 4.725 17.678 21.787 1 42.9 ? C6N NAJ 1300 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#