data_2BGM # _model_server_result.job_id ZhBSCT9YGze_Lb1f1rK0bA _model_server_result.datetime_utc '2024-10-19 11:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1300}' # _entry.id 2BGM # _exptl.entry_id 2BGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BGM _cell.length_a 57.35 _cell.length_b 118.74 _cell.length_c 131.25 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 59.37 65.625 3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 28.675 0 65.625 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 28.675 59.37 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAJ _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAJ doub 287 n n PA O2A NAJ sing 288 n n PA O5B NAJ sing 289 n n PA O3 NAJ sing 290 n n O5B C5B NAJ sing 291 n n C5B C4B NAJ sing 292 n n C5B H51A NAJ sing 293 n n C5B H52A NAJ sing 294 n n C4B O4B NAJ sing 295 n n C4B C3B NAJ sing 296 n n C4B H4B NAJ sing 297 n n O4B C1B NAJ sing 298 n n C3B O3B NAJ sing 299 n n C3B C2B NAJ sing 300 n n C3B H3B NAJ sing 301 n n O3B HO3A NAJ sing 302 n n C2B O2B NAJ sing 303 n n C2B C1B NAJ sing 304 n n C2B H2B NAJ sing 305 n n O2B HO2A NAJ sing 306 n n C1B N9A NAJ sing 307 n n C1B H1B NAJ sing 308 n n N9A C8A NAJ sing 309 n y N9A C4A NAJ sing 310 n y C8A N7A NAJ doub 311 n y C8A H8A NAJ sing 312 n n N7A C5A NAJ sing 313 n y C5A C6A NAJ sing 314 n y C5A C4A NAJ doub 315 n y C6A N6A NAJ sing 316 n n C6A N1A NAJ doub 317 n y N6A H61A NAJ sing 318 n n N6A H62A NAJ sing 319 n n N1A C2A NAJ sing 320 n y N1A H1A NAJ sing 321 n n C2A N3A NAJ doub 322 n y C2A H2A NAJ sing 323 n n N3A C4A NAJ sing 324 n y O3 PN NAJ sing 325 n n PN O1N NAJ doub 326 n n PN O2N NAJ sing 327 n n PN O5D NAJ sing 328 n n O5D C5D NAJ sing 329 n n C5D C4D NAJ sing 330 n n C5D H51N NAJ sing 331 n n C5D H52N NAJ sing 332 n n C4D O4D NAJ sing 333 n n C4D C3D NAJ sing 334 n n C4D H4D NAJ sing 335 n n O4D C1D NAJ sing 336 n n C3D O3D NAJ sing 337 n n C3D C2D NAJ sing 338 n n C3D H3D NAJ sing 339 n n O3D HO3N NAJ sing 340 n n C2D O2D NAJ sing 341 n n C2D C1D NAJ sing 342 n n C2D H2D NAJ sing 343 n n O2D HO2N NAJ sing 344 n n C1D N1N NAJ sing 345 n n C1D H1D NAJ sing 346 n n N1N C2N NAJ sing 347 n y N1N C6N NAJ doub 348 n y C2N C3N NAJ doub 349 n y C2N H2N NAJ sing 350 n n C3N C7N NAJ sing 351 n n C3N C4N NAJ sing 352 n y C7N O7N NAJ doub 353 n n C7N N7N NAJ sing 354 n n N7N H71N NAJ sing 355 n n N7N H72N NAJ sing 356 n n C4N C5N NAJ doub 357 n y C4N H4N NAJ sing 358 n n C5N C6N NAJ sing 359 n y C5N H5N NAJ sing 360 n n C6N H6N NAJ sing 361 n n # _atom_sites.entry_id 2BGM _atom_sites.fract_transf_matrix[1][1] 0.017437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAJ A 1 1300 1300 NAJ NAJ . C 3 MAX A 1 6001 6001 MAX MAX . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAJ . . . B 2 2.845 10.342 16.619 1 21.54 ? PA NAJ 1300 A 1 HETATM 2 O O1A NAJ . . . B 2 2.543 9.372 17.692 1 24.98 ? O1A NAJ 1300 A 1 HETATM 3 O O2A NAJ . . . B 2 1.899 10.504 15.497 1 23.59 ? O2A NAJ 1300 A 1 HETATM 4 O O5B NAJ . . . B 2 4.343 10.106 16.051 1 14.16 ? O5B NAJ 1300 A 1 HETATM 5 C C5B NAJ . . . B 2 5.426 9.639 16.883 1 15.18 ? C5B NAJ 1300 A 1 HETATM 6 C C4B NAJ . . . B 2 5.958 8.344 16.279 1 20.41 ? C4B NAJ 1300 A 1 HETATM 7 O O4B NAJ . . . B 2 6.818 7.66 17.208 1 19.48 ? O4B NAJ 1300 A 1 HETATM 8 C C3B NAJ . . . B 2 4.848 7.343 15.952 1 20.18 ? C3B NAJ 1300 A 1 HETATM 9 O O3B NAJ . . . B 2 4.679 7.196 14.538 1 20.54 ? O3B NAJ 1300 A 1 HETATM 10 C C2B NAJ . . . B 2 5.265 6.026 16.608 1 17.87 ? C2B NAJ 1300 A 1 HETATM 11 O O2B NAJ . . . B 2 5.054 4.878 15.78 1 20.21 ? O2B NAJ 1300 A 1 HETATM 12 C C1B NAJ . . . B 2 6.724 6.27 16.848 1 15.97 ? C1B NAJ 1300 A 1 HETATM 13 N N9A NAJ . . . B 2 7.261 5.341 17.855 1 12.46 ? N9A NAJ 1300 A 1 HETATM 14 C C8A NAJ . . . B 2 6.771 5.034 19.067 1 10.89 ? C8A NAJ 1300 A 1 HETATM 15 N N7A NAJ . . . B 2 7.628 4.252 19.732 1 7.87 ? N7A NAJ 1300 A 1 HETATM 16 C C5A NAJ . . . B 2 8.631 4.092 18.882 1 4.96 ? C5A NAJ 1300 A 1 HETATM 17 C C6A NAJ . . . B 2 9.759 3.339 19.103 1 5.93 ? C6A NAJ 1300 A 1 HETATM 18 N N6A NAJ . . . B 2 9.994 2.802 20.293 1 10.4 ? N6A NAJ 1300 A 1 HETATM 19 N N1A NAJ . . . B 2 10.642 3.27 18.082 1 6.69 ? N1A NAJ 1300 A 1 HETATM 20 C C2A NAJ . . . B 2 10.446 3.899 16.923 1 5.93 ? C2A NAJ 1300 A 1 HETATM 21 N N3A NAJ . . . B 2 9.356 4.621 16.725 1 11.07 ? N3A NAJ 1300 A 1 HETATM 22 C C4A NAJ . . . B 2 8.431 4.736 17.693 1 10.46 ? C4A NAJ 1300 A 1 HETATM 23 O O3 NAJ . . . B 2 2.955 11.754 17.381 1 27.06 ? O3 NAJ 1300 A 1 HETATM 24 P PN NAJ . . . B 2 3.555 13.226 17.082 1 26.68 ? PN NAJ 1300 A 1 HETATM 25 O O1N NAJ . . . B 2 2.512 14.19 17.516 1 29.95 ? O1N NAJ 1300 A 1 HETATM 26 O O2N NAJ . . . B 2 4.069 13.308 15.697 1 28.55 ? O2N NAJ 1300 A 1 HETATM 27 O O5D NAJ . . . B 2 4.811 13.188 18.101 1 26.81 ? O5D NAJ 1300 A 1 HETATM 28 C C5D NAJ . . . B 2 6.175 13.472 17.737 1 21.09 ? C5D NAJ 1300 A 1 HETATM 29 C C4D NAJ . . . B 2 6.925 14.056 18.938 1 19.6 ? C4D NAJ 1300 A 1 HETATM 30 O O4D NAJ . . . B 2 6.38 15.346 19.307 1 23.33 ? O4D NAJ 1300 A 1 HETATM 31 C C3D NAJ . . . B 2 6.842 13.242 20.213 1 16.06 ? C3D NAJ 1300 A 1 HETATM 32 O O3D NAJ . . . B 2 8.092 13.321 20.9 1 14.69 ? O3D NAJ 1300 A 1 HETATM 33 C C2D NAJ . . . B 2 5.769 13.948 21.022 1 17.28 ? C2D NAJ 1300 A 1 HETATM 34 O O2D NAJ . . . B 2 5.903 13.633 22.395 1 21.26 ? O2D NAJ 1300 A 1 HETATM 35 C C1D NAJ . . . B 2 6.1 15.389 20.722 1 20.33 ? C1D NAJ 1300 A 1 HETATM 36 N N1N NAJ . . . B 2 5.032 16.38 21.022 1 21.92 ? N1N NAJ 1300 A 1 HETATM 37 C C2N NAJ . . . B 2 3.714 16.214 20.539 1 25.89 ? C2N NAJ 1300 A 1 HETATM 38 C C3N NAJ . . . B 2 2.728 17.185 20.742 1 22.91 ? C3N NAJ 1300 A 1 HETATM 39 C C7N NAJ . . . B 2 1.448 17.185 19.887 1 23.11 ? C7N NAJ 1300 A 1 HETATM 40 O O7N NAJ . . . B 2 0.503 17.927 20.166 1 23.44 ? O7N NAJ 1300 A 1 HETATM 41 N N7N NAJ . . . B 2 1.433 16.355 18.847 1 19.89 ? N7N NAJ 1300 A 1 HETATM 42 C C4N NAJ . . . B 2 3.043 18.315 21.499 1 22.86 ? C4N NAJ 1300 A 1 HETATM 43 C C5N NAJ . . . B 2 4.339 18.504 21.981 1 18.07 ? C5N NAJ 1300 A 1 HETATM 44 C C6N NAJ . . . B 2 5.332 17.558 21.732 1 21.57 ? C6N NAJ 1300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #