data_2BH3 # _model_server_result.job_id lXLLxK1EzWecir4S35lUcg _model_server_result.datetime_utc '2024-11-18 14:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2BH3 # _exptl.entry_id 2BH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BH3 _cell.length_a 138.012 _cell.length_b 138.012 _cell.length_c 230.734 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 69.006 69.006 115.367 3 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -69.006 69.006 115.367 4 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 138.012 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 71 A HIS 71 1_555 H ZN ZN . A ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 A NE2 HIS 243 A HIS 243 1_555 I ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc3 A OD1 ASP 260 A ASP 260 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 A OD2 ASP 260 A ASP 260 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc5 A OD1 ASP 271 A ASP 271 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 A OD2 ASP 271 A ASP 271 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 A NE2 HIS 354 A HIS 354 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc8 A NE2 HIS 361 A HIS 361 1_555 I ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 A OE2 GLU 383 A GLU 383 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc10 A OE1 GLU 406 A GLU 406 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 A OE2 GLU 406 A GLU 406 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 B N PRO . A PRO 501 1_555 I ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc13 B O PRO . A PRO 501 1_555 I ZN ZN . A ZN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc14 D ZN ZN . A ZN 1001 1_555 J O HOH . A HOH 2145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc15 E ZN ZN . A ZN 1002 1_555 J O HOH . A HOH 2145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc16 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2087 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc17 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2089 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc18 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2091 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc19 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc20 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc21 F MG MG . A MG 1003 1_555 J O HOH . A HOH 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc22 I ZN ZN . A ZN 1008 1_555 J O HOH . A HOH 2146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 190 n n N H LEU sing 191 n n N H2 LEU sing 192 n n CA C LEU sing 193 n n CA CB LEU sing 194 n n CA HA LEU sing 195 n n C O LEU doub 196 n n C OXT LEU sing 197 n n CB CG LEU sing 198 n n CB HB2 LEU sing 199 n n CB HB3 LEU sing 200 n n CG CD1 LEU sing 201 n n CG CD2 LEU sing 202 n n CG HG LEU sing 203 n n CD1 HD11 LEU sing 204 n n CD1 HD12 LEU sing 205 n n CD1 HD13 LEU sing 206 n n CD2 HD21 LEU sing 207 n n CD2 HD22 LEU sing 208 n n CD2 HD23 LEU sing 209 n n OXT HXT LEU sing 210 n n # _atom_sites.entry_id 2BH3 _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRO A 1 501 501 PRO PRO . C 3 LEU A 1 502 502 LEU LEU . D 4 ZN A 1 1001 1001 ZN ZN . E 4 ZN A 1 1002 1002 ZN ZN . F 5 MG A 1 1003 1003 MG MG . G 6 FLC A 1 1005 1005 FLC FLC . H 4 ZN A 1 1007 1007 ZN ZN . I 4 ZN A 1 1008 1008 ZN ZN . J 7 HOH A 1 2001 2001 HOH HOH . J 7 HOH A 2 2002 2002 HOH HOH . J 7 HOH A 3 2003 2003 HOH HOH . J 7 HOH A 4 2004 2004 HOH HOH . J 7 HOH A 5 2005 2005 HOH HOH . J 7 HOH A 6 2006 2006 HOH HOH . J 7 HOH A 7 2007 2007 HOH HOH . J 7 HOH A 8 2008 2008 HOH HOH . J 7 HOH A 9 2009 2009 HOH HOH . J 7 HOH A 10 2010 2010 HOH HOH . J 7 HOH A 11 2011 2011 HOH HOH . J 7 HOH A 12 2012 2012 HOH HOH . J 7 HOH A 13 2013 2013 HOH HOH . J 7 HOH A 14 2014 2014 HOH HOH . J 7 HOH A 15 2015 2015 HOH HOH . J 7 HOH A 16 2016 2016 HOH HOH . J 7 HOH A 17 2017 2017 HOH HOH . J 7 HOH A 18 2018 2018 HOH HOH . J 7 HOH A 19 2019 2019 HOH HOH . J 7 HOH A 20 2020 2020 HOH HOH . J 7 HOH A 21 2021 2021 HOH HOH . J 7 HOH A 22 2022 2022 HOH HOH . J 7 HOH A 23 2023 2023 HOH HOH . J 7 HOH A 24 2024 2024 HOH HOH . J 7 HOH A 25 2025 2025 HOH HOH . J 7 HOH A 26 2026 2026 HOH HOH . J 7 HOH A 27 2027 2027 HOH HOH . J 7 HOH A 28 2028 2028 HOH HOH . J 7 HOH A 29 2029 2029 HOH HOH . J 7 HOH A 30 2030 2030 HOH HOH . J 7 HOH A 31 2031 2031 HOH HOH . J 7 HOH A 32 2032 2032 HOH HOH . J 7 HOH A 33 2033 2033 HOH HOH . J 7 HOH A 34 2034 2034 HOH HOH . J 7 HOH A 35 2035 2035 HOH HOH . J 7 HOH A 36 2036 2036 HOH HOH . J 7 HOH A 37 2037 2037 HOH HOH . J 7 HOH A 38 2038 2038 HOH HOH . J 7 HOH A 39 2039 2039 HOH HOH . J 7 HOH A 40 2040 2040 HOH HOH . J 7 HOH A 41 2041 2041 HOH HOH . J 7 HOH A 42 2042 2042 HOH HOH . J 7 HOH A 43 2043 2043 HOH HOH . J 7 HOH A 44 2044 2044 HOH HOH . J 7 HOH A 45 2045 2045 HOH HOH . J 7 HOH A 46 2046 2046 HOH HOH . J 7 HOH A 47 2047 2047 HOH HOH . J 7 HOH A 48 2048 2048 HOH HOH . J 7 HOH A 49 2049 2049 HOH HOH . J 7 HOH A 50 2050 2050 HOH HOH . J 7 HOH A 51 2051 2051 HOH HOH . J 7 HOH A 52 2052 2052 HOH HOH . J 7 HOH A 53 2053 2053 HOH HOH . J 7 HOH A 54 2054 2054 HOH HOH . J 7 HOH A 55 2055 2055 HOH HOH . J 7 HOH A 56 2056 2056 HOH HOH . J 7 HOH A 57 2057 2057 HOH HOH . J 7 HOH A 58 2058 2058 HOH HOH . J 7 HOH A 59 2059 2059 HOH HOH . J 7 HOH A 60 2060 2060 HOH HOH . J 7 HOH A 61 2061 2061 HOH HOH . J 7 HOH A 62 2062 2062 HOH HOH . J 7 HOH A 63 2063 2063 HOH HOH . J 7 HOH A 64 2064 2064 HOH HOH . J 7 HOH A 65 2065 2065 HOH HOH . J 7 HOH A 66 2066 2066 HOH HOH . J 7 HOH A 67 2067 2067 HOH HOH . J 7 HOH A 68 2068 2068 HOH HOH . J 7 HOH A 69 2069 2069 HOH HOH . J 7 HOH A 70 2070 2070 HOH HOH . J 7 HOH A 71 2071 2071 HOH HOH . J 7 HOH A 72 2072 2072 HOH HOH . J 7 HOH A 73 2073 2073 HOH HOH . J 7 HOH A 74 2074 2074 HOH HOH . J 7 HOH A 75 2075 2075 HOH HOH . J 7 HOH A 76 2076 2076 HOH HOH . J 7 HOH A 77 2077 2077 HOH HOH . J 7 HOH A 78 2078 2078 HOH HOH . J 7 HOH A 79 2079 2079 HOH HOH . J 7 HOH A 80 2080 2080 HOH HOH . J 7 HOH A 81 2081 2081 HOH HOH . J 7 HOH A 82 2082 2082 HOH HOH . J 7 HOH A 83 2083 2083 HOH HOH . J 7 HOH A 84 2084 2084 HOH HOH . J 7 HOH A 85 2085 2085 HOH HOH . J 7 HOH A 86 2086 2086 HOH HOH . J 7 HOH A 87 2087 2087 HOH HOH . J 7 HOH A 88 2088 2088 HOH HOH . J 7 HOH A 89 2089 2089 HOH HOH . J 7 HOH A 90 2090 2090 HOH HOH . J 7 HOH A 91 2091 2091 HOH HOH . J 7 HOH A 92 2092 2092 HOH HOH . J 7 HOH A 93 2093 2093 HOH HOH . J 7 HOH A 94 2094 2094 HOH HOH . J 7 HOH A 95 2095 2095 HOH HOH . J 7 HOH A 96 2096 2096 HOH HOH . J 7 HOH A 97 2097 2097 HOH HOH . J 7 HOH A 98 2098 2098 HOH HOH . J 7 HOH A 99 2099 2099 HOH HOH . J 7 HOH A 100 2100 2100 HOH HOH . J 7 HOH A 101 2101 2101 HOH HOH . J 7 HOH A 102 2102 2102 HOH HOH . J 7 HOH A 103 2103 2103 HOH HOH . J 7 HOH A 104 2104 2104 HOH HOH . J 7 HOH A 105 2105 2105 HOH HOH . J 7 HOH A 106 2106 2106 HOH HOH . J 7 HOH A 107 2107 2107 HOH HOH . J 7 HOH A 108 2108 2108 HOH HOH . J 7 HOH A 109 2109 2109 HOH HOH . J 7 HOH A 110 2110 2110 HOH HOH . J 7 HOH A 111 2111 2111 HOH HOH . J 7 HOH A 112 2112 2112 HOH HOH . J 7 HOH A 113 2113 2113 HOH HOH . J 7 HOH A 114 2114 2114 HOH HOH . J 7 HOH A 115 2115 2115 HOH HOH . J 7 HOH A 116 2116 2116 HOH HOH . J 7 HOH A 117 2117 2117 HOH HOH . J 7 HOH A 118 2118 2118 HOH HOH . J 7 HOH A 119 2119 2119 HOH HOH . J 7 HOH A 120 2120 2120 HOH HOH . J 7 HOH A 121 2121 2121 HOH HOH . J 7 HOH A 122 2122 2122 HOH HOH . J 7 HOH A 123 2123 2123 HOH HOH . J 7 HOH A 124 2124 2124 HOH HOH . J 7 HOH A 125 2125 2125 HOH HOH . J 7 HOH A 126 2126 2126 HOH HOH . J 7 HOH A 127 2127 2127 HOH HOH . J 7 HOH A 128 2128 2128 HOH HOH . J 7 HOH A 129 2129 2129 HOH HOH . J 7 HOH A 130 2130 2130 HOH HOH . J 7 HOH A 131 2131 2131 HOH HOH . J 7 HOH A 132 2132 2132 HOH HOH . J 7 HOH A 133 2133 2133 HOH HOH . J 7 HOH A 134 2134 2134 HOH HOH . J 7 HOH A 135 2135 2135 HOH HOH . J 7 HOH A 136 2136 2136 HOH HOH . J 7 HOH A 137 2137 2137 HOH HOH . J 7 HOH A 138 2138 2138 HOH HOH . J 7 HOH A 139 2139 2139 HOH HOH . J 7 HOH A 140 2140 2140 HOH HOH . J 7 HOH A 141 2141 2141 HOH HOH . J 7 HOH A 142 2142 2142 HOH HOH . J 7 HOH A 143 2143 2143 HOH HOH . J 7 HOH A 144 2144 2144 HOH HOH . J 7 HOH A 145 2145 2145 HOH HOH . J 7 HOH A 146 2146 2146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . C 3 28.063 60.034 41.47 1 57.17 ? N LEU 502 A 1 HETATM 2 C CA LEU . . . C 3 27.216 61.229 41.467 1 57.82 ? CA LEU 502 A 1 HETATM 3 C C LEU . . . C 3 27.384 61.864 40.094 1 57.95 ? C LEU 502 A 1 HETATM 4 O O LEU . . . C 3 26.438 62.324 39.459 1 58.41 ? O LEU 502 A 1 HETATM 5 C CB LEU . . . C 3 27.633 62.208 42.578 1 56.83 ? CB LEU 502 A 1 HETATM 6 C CG LEU . . . C 3 26.794 63.482 42.766 1 56.96 ? CG LEU 502 A 1 HETATM 7 C CD1 LEU . . . C 3 25.431 63.184 43.344 1 55.58 ? CD1 LEU 502 A 1 HETATM 8 C CD2 LEU . . . C 3 27.519 64.471 43.659 1 58.47 ? CD2 LEU 502 A 1 HETATM 9 O OXT LEU . . . C 3 28.498 61.914 39.576 1 58.53 ? OXT LEU 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #