data_2BH4 # _model_server_result.job_id i8VVoOz6UjtAAgJefBAzdQ _model_server_result.datetime_utc '2024-10-20 05:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1123}' # _entry.id 2BH4 # _exptl.entry_id 2BH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BH4 _cell.length_a 30.868 _cell.length_b 42.88 _cell.length_c 87.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 15 X CYS 15 1_555 B CAB HEC . X HEC 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale2 A SG CYS 18 X CYS 18 1_555 B CAC HEC . X HEC 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 B FE HEC . X HEC 1123 1_555 A NE2 HIS 19 X HIS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B FE HEC . X HEC 1123 1_555 A NZ LYS 100 X LYS 100 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 B FE HEC . X HEC 1123 1_555 A NZ LYS 100 X LYS 100 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BH4 _atom_sites.fract_transf_matrix[1][1] 0.032396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC X 1 1123 1123 HEC HEC . C 3 HOH X 1 2001 2001 HOH HOH . C 3 HOH X 2 2002 2002 HOH HOH . C 3 HOH X 3 2003 2003 HOH HOH . C 3 HOH X 4 2004 2004 HOH HOH . C 3 HOH X 5 2005 2005 HOH HOH . C 3 HOH X 6 2006 2006 HOH HOH . C 3 HOH X 7 2007 2007 HOH HOH . C 3 HOH X 8 2008 2008 HOH HOH . C 3 HOH X 9 2009 2009 HOH HOH . C 3 HOH X 10 2010 2010 HOH HOH . C 3 HOH X 11 2011 2011 HOH HOH . C 3 HOH X 12 2012 2012 HOH HOH . C 3 HOH X 13 2013 2013 HOH HOH . C 3 HOH X 14 2014 2014 HOH HOH . C 3 HOH X 15 2015 2015 HOH HOH . C 3 HOH X 16 2016 2016 HOH HOH . C 3 HOH X 17 2017 2017 HOH HOH . C 3 HOH X 18 2018 2018 HOH HOH . C 3 HOH X 19 2019 2019 HOH HOH . C 3 HOH X 20 2020 2020 HOH HOH . C 3 HOH X 21 2021 2021 HOH HOH . C 3 HOH X 22 2022 2022 HOH HOH . C 3 HOH X 23 2023 2023 HOH HOH . C 3 HOH X 24 2024 2024 HOH HOH . C 3 HOH X 25 2025 2025 HOH HOH . C 3 HOH X 26 2026 2026 HOH HOH . C 3 HOH X 27 2027 2027 HOH HOH . C 3 HOH X 28 2028 2028 HOH HOH . C 3 HOH X 29 2029 2029 HOH HOH . C 3 HOH X 30 2030 2030 HOH HOH . C 3 HOH X 31 2031 2031 HOH HOH . C 3 HOH X 32 2032 2032 HOH HOH . C 3 HOH X 33 2033 2033 HOH HOH . C 3 HOH X 34 2034 2034 HOH HOH . C 3 HOH X 35 2035 2035 HOH HOH . C 3 HOH X 36 2036 2036 HOH HOH . C 3 HOH X 37 2037 2037 HOH HOH . C 3 HOH X 38 2038 2038 HOH HOH . C 3 HOH X 39 2039 2039 HOH HOH . C 3 HOH X 40 2040 2040 HOH HOH . C 3 HOH X 41 2041 2041 HOH HOH . C 3 HOH X 42 2042 2042 HOH HOH . C 3 HOH X 43 2043 2043 HOH HOH . C 3 HOH X 44 2044 2044 HOH HOH . C 3 HOH X 45 2045 2045 HOH HOH . C 3 HOH X 46 2046 2046 HOH HOH . C 3 HOH X 47 2047 2047 HOH HOH . C 3 HOH X 48 2048 2048 HOH HOH . C 3 HOH X 49 2049 2049 HOH HOH . C 3 HOH X 50 2050 2050 HOH HOH . C 3 HOH X 51 2051 2051 HOH HOH . C 3 HOH X 52 2052 2052 HOH HOH . C 3 HOH X 53 2053 2053 HOH HOH . C 3 HOH X 54 2054 2054 HOH HOH . C 3 HOH X 55 2055 2055 HOH HOH . C 3 HOH X 56 2056 2056 HOH HOH . C 3 HOH X 57 2057 2057 HOH HOH . C 3 HOH X 58 2058 2058 HOH HOH . C 3 HOH X 59 2059 2059 HOH HOH . C 3 HOH X 60 2060 2060 HOH HOH . C 3 HOH X 61 2061 2061 HOH HOH . C 3 HOH X 62 2062 2062 HOH HOH . C 3 HOH X 63 2063 2063 HOH HOH . C 3 HOH X 64 2064 2064 HOH HOH . C 3 HOH X 65 2065 2065 HOH HOH . C 3 HOH X 66 2066 2066 HOH HOH . C 3 HOH X 67 2067 2067 HOH HOH . C 3 HOH X 68 2068 2068 HOH HOH . C 3 HOH X 69 2069 2069 HOH HOH . C 3 HOH X 70 2070 2070 HOH HOH . C 3 HOH X 71 2071 2071 HOH HOH . C 3 HOH X 72 2072 2072 HOH HOH . C 3 HOH X 73 2073 2073 HOH HOH . C 3 HOH X 74 2074 2074 HOH HOH . C 3 HOH X 75 2075 2075 HOH HOH . C 3 HOH X 76 2076 2076 HOH HOH . C 3 HOH X 77 2077 2077 HOH HOH . C 3 HOH X 78 2078 2078 HOH HOH . C 3 HOH X 79 2079 2079 HOH HOH . C 3 HOH X 80 2080 2080 HOH HOH . C 3 HOH X 81 2081 2081 HOH HOH . C 3 HOH X 82 2082 2082 HOH HOH . C 3 HOH X 83 2083 2083 HOH HOH . C 3 HOH X 84 2084 2084 HOH HOH . C 3 HOH X 85 2085 2085 HOH HOH . C 3 HOH X 86 2086 2086 HOH HOH . C 3 HOH X 87 2087 2087 HOH HOH . C 3 HOH X 88 2088 2088 HOH HOH . C 3 HOH X 89 2089 2089 HOH HOH . C 3 HOH X 90 2090 2090 HOH HOH . C 3 HOH X 91 2091 2091 HOH HOH . C 3 HOH X 92 2092 2092 HOH HOH . C 3 HOH X 93 2093 2093 HOH HOH . C 3 HOH X 94 2094 2094 HOH HOH . C 3 HOH X 95 2095 2095 HOH HOH . C 3 HOH X 96 2096 2096 HOH HOH . C 3 HOH X 97 2097 2097 HOH HOH . C 3 HOH X 98 2098 2098 HOH HOH . C 3 HOH X 99 2099 2099 HOH HOH . C 3 HOH X 100 2100 2100 HOH HOH . C 3 HOH X 101 2101 2101 HOH HOH . C 3 HOH X 102 2102 2102 HOH HOH . C 3 HOH X 103 2103 2103 HOH HOH . C 3 HOH X 104 2104 2104 HOH HOH . C 3 HOH X 105 2105 2105 HOH HOH . C 3 HOH X 106 2106 2106 HOH HOH . C 3 HOH X 107 2107 2107 HOH HOH . C 3 HOH X 108 2108 2108 HOH HOH . C 3 HOH X 109 2109 2109 HOH HOH . C 3 HOH X 110 2110 2110 HOH HOH . C 3 HOH X 111 2111 2111 HOH HOH . C 3 HOH X 112 2112 2112 HOH HOH . C 3 HOH X 113 2113 2113 HOH HOH . C 3 HOH X 114 2114 2114 HOH HOH . C 3 HOH X 115 2115 2115 HOH HOH . C 3 HOH X 116 2116 2116 HOH HOH . C 3 HOH X 117 2117 2117 HOH HOH . C 3 HOH X 118 2118 2118 HOH HOH . C 3 HOH X 119 2119 2119 HOH HOH . C 3 HOH X 120 2120 2120 HOH HOH . C 3 HOH X 121 2121 2121 HOH HOH . C 3 HOH X 122 2122 2122 HOH HOH . C 3 HOH X 123 2123 2123 HOH HOH . C 3 HOH X 124 2124 2124 HOH HOH . C 3 HOH X 125 2125 2125 HOH HOH . C 3 HOH X 126 2126 2126 HOH HOH . C 3 HOH X 127 2127 2127 HOH HOH . C 3 HOH X 128 2128 2128 HOH HOH . C 3 HOH X 129 2129 2129 HOH HOH . C 3 HOH X 130 2130 2130 HOH HOH . C 3 HOH X 131 2131 2131 HOH HOH . C 3 HOH X 132 2132 2132 HOH HOH . C 3 HOH X 133 2133 2133 HOH HOH . C 3 HOH X 134 2134 2134 HOH HOH . C 3 HOH X 135 2135 2135 HOH HOH . C 3 HOH X 136 2136 2136 HOH HOH . C 3 HOH X 137 2137 2137 HOH HOH . C 3 HOH X 138 2138 2138 HOH HOH . C 3 HOH X 139 2139 2139 HOH HOH . C 3 HOH X 140 2140 2140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 6.994 10.004 34.954 1 13.4 ? FE HEC 1123 X 1 HETATM 2 C CHA HEC . . . B 2 5.866 6.882 34.231 1 13.33 ? CHA HEC 1123 X 1 HETATM 3 C CHB HEC . . . B 2 4.343 11.35 33.27 1 13.25 ? CHB HEC 1123 X 1 HETATM 4 C CHC HEC . . . B 2 7.899 13.141 36.001 1 13.1 ? CHC HEC 1123 X 1 HETATM 5 C CHD HEC . . . B 2 9.955 8.772 36.112 1 15.35 ? CHD HEC 1123 X 1 HETATM 6 N NA HEC . . . B 2 5.417 9.253 33.955 1 13.86 ? NA HEC 1123 X 1 HETATM 7 C C1A HEC . . . B 2 5.099 7.925 33.771 1 12.39 ? C1A HEC 1123 X 1 HETATM 8 C C2A HEC . . . B 2 3.873 7.791 33.035 1 12.39 ? C2A HEC 1123 X 1 HETATM 9 C C3A HEC . . . B 2 3.451 9.039 32.777 1 12.01 ? C3A HEC 1123 X 1 HETATM 10 C C4A HEC . . . B 2 4.407 9.975 33.348 1 12.02 ? C4A HEC 1123 X 1 HETATM 11 C CMA HEC . . . B 2 2.176 9.423 32.022 1 13.75 ? CMA HEC 1123 X 1 HETATM 12 C CAA HEC . . . B 2 3.246 6.461 32.6 1 14.31 ? CAA HEC 1123 X 1 HETATM 13 C CBA HEC . . . B 2 3.837 6.119 31.234 1 13.93 ? CBA HEC 1123 X 1 HETATM 14 C CGA HEC . . . B 2 3.402 4.805 30.628 1 14.21 ? CGA HEC 1123 X 1 HETATM 15 O O1A HEC . . . B 2 4.014 4.419 29.578 1 14.92 ? O1A HEC 1123 X 1 HETATM 16 O O2A HEC . . . B 2 2.463 4.14 31.144 1 14.17 ? O2A HEC 1123 X 1 HETATM 17 N NB HEC . . . B 2 6.263 11.895 34.684 1 12.34 ? NB HEC 1123 X 1 HETATM 18 C C1B HEC . . . B 2 5.198 12.232 33.878 1 12.49 ? C1B HEC 1123 X 1 HETATM 19 C C2B HEC . . . B 2 5.069 13.673 33.884 1 12.7 ? C2B HEC 1123 X 1 HETATM 20 C C3B HEC . . . B 2 6.014 14.158 34.678 1 12.82 ? C3B HEC 1123 X 1 HETATM 21 C C4B HEC . . . B 2 6.815 13.058 35.179 1 12.23 ? C4B HEC 1123 X 1 HETATM 22 C CMB HEC . . . B 2 4.011 14.448 33.083 1 14.21 ? CMB HEC 1123 X 1 HETATM 23 C CAB HEC . . . B 2 6.25 15.639 35.041 1 15.02 ? CAB HEC 1123 X 1 HETATM 24 C CBB HEC . . . B 2 5.202 16.232 35.687 1 14.11 ? CBB HEC 1123 X 1 HETATM 25 N NC HEC . . . B 2 8.592 10.809 35.857 1 14.91 ? NC HEC 1123 X 1 HETATM 26 C C1C HEC . . . B 2 8.78 12.101 36.254 1 12.1 ? C1C HEC 1123 X 1 HETATM 27 C C2C HEC . . . B 2 10.067 12.238 36.898 1 14.05 ? C2C HEC 1123 X 1 HETATM 28 C C3C HEC . . . B 2 10.661 11.039 36.943 1 15.28 ? C3C HEC 1123 X 1 HETATM 29 C C4C HEC . . . B 2 9.742 10.132 36.264 1 11.3 ? C4C HEC 1123 X 1 HETATM 30 C CMC HEC . . . B 2 10.603 13.578 37.441 1 16.06 ? CMC HEC 1123 X 1 HETATM 31 C CAC HEC . . . B 2 12.046 10.636 37.521 1 17.48 ? CAC HEC 1123 X 1 HETATM 32 C CBC HEC . . . B 2 12.437 10.996 38.774 1 16.1 ? CBC HEC 1123 X 1 HETATM 33 N ND HEC . . . B 2 7.771 8.17 35.145 1 12.7 ? ND HEC 1123 X 1 HETATM 34 C C1D HEC . . . B 2 9.014 7.876 35.688 1 12.38 ? C1D HEC 1123 X 1 HETATM 35 C C2D HEC . . . B 2 9.156 6.443 35.82 1 14.09 ? C2D HEC 1123 X 1 HETATM 36 C C3D HEC . . . B 2 7.908 5.869 35.257 1 11.79 ? C3D HEC 1123 X 1 HETATM 37 C C4D HEC . . . B 2 7.064 7.003 34.859 1 13.56 ? C4D HEC 1123 X 1 HETATM 38 C CMD HEC . . . B 2 10.328 5.629 36.376 1 15.82 ? CMD HEC 1123 X 1 HETATM 39 C CAD HEC . . . B 2 7.583 4.363 35.241 1 13.34 ? CAD HEC 1123 X 1 HETATM 40 C CBD HEC . . . B 2 6.694 4.183 36.487 1 15.06 ? CBD HEC 1123 X 1 HETATM 41 C CGD HEC . . . B 2 6.578 2.737 36.961 1 16.16 ? CGD HEC 1123 X 1 HETATM 42 O O1D HEC . . . B 2 7.026 1.831 36.224 1 20.43 ? O1D HEC 1123 X 1 HETATM 43 O O2D HEC . . . B 2 6.007 2.493 38.055 1 20.67 ? O2D HEC 1123 X 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 533 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 43 #