data_2BHD # _model_server_result.job_id d0FbR-YAs58FKWE5F0cidQ _model_server_result.datetime_utc '2024-12-12 02:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1444}' # _entry.id 2BHD # _exptl.entry_id 2BHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BHD _cell.length_a 138.569 _cell.length_b 138.569 _cell.length_c 230.962 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 69.2845 69.2845 115.481 3 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -69.2845 69.2845 115.481 4 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 138.569 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 260 A ASP 260 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 A OD2 ASP 260 A ASP 260 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc3 A OD2 ASP 271 A ASP 271 1_555 C MG MG . A MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A OD1 ASP 271 A ASP 271 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc5 A OD2 ASP 271 A ASP 271 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc6 A NE2 HIS 354 A HIS 354 1_555 C MG MG . A MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A OE2 GLU 383 A GLU 383 1_555 C MG MG . A MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc8 A OE2 GLU 406 A GLU 406 1_555 C MG MG . A MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc9 A OE1 GLU 406 A GLU 406 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 A OE2 GLU 406 A GLU 406 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc11 C MG MG . A MG 1441 1_555 D MG MG . A MG 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc12 C MG MG . A MG 1441 1_555 G O HOH . A HOH 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc13 D MG MG . A MG 1442 1_555 G O HOH . A HOH 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc14 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2054 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc15 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2055 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc16 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2057 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc17 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc18 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc19 E MG MG . A MG 1443 1_555 G O HOH . A HOH 2090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 2BHD _atom_sites.fract_transf_matrix[1][1] 0.007217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1441 1441 MG MG . D 3 MG A 1 1442 1442 MG MG . E 3 MG A 1 1443 1443 MG MG . F 4 FLC A 1 1444 1444 FLC FLC . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . G 5 HOH A 57 2057 2057 HOH HOH . G 5 HOH A 58 2058 2058 HOH HOH . G 5 HOH A 59 2059 2059 HOH HOH . G 5 HOH A 60 2060 2060 HOH HOH . G 5 HOH A 61 2061 2061 HOH HOH . G 5 HOH A 62 2062 2062 HOH HOH . G 5 HOH A 63 2063 2063 HOH HOH . G 5 HOH A 64 2064 2064 HOH HOH . G 5 HOH A 65 2065 2065 HOH HOH . G 5 HOH A 66 2066 2066 HOH HOH . G 5 HOH A 67 2067 2067 HOH HOH . G 5 HOH A 68 2068 2068 HOH HOH . G 5 HOH A 69 2069 2069 HOH HOH . G 5 HOH A 70 2070 2070 HOH HOH . G 5 HOH A 71 2071 2071 HOH HOH . G 5 HOH A 72 2072 2072 HOH HOH . G 5 HOH A 73 2073 2073 HOH HOH . G 5 HOH A 74 2074 2074 HOH HOH . G 5 HOH A 75 2075 2075 HOH HOH . G 5 HOH A 76 2076 2076 HOH HOH . G 5 HOH A 77 2077 2077 HOH HOH . G 5 HOH A 78 2078 2078 HOH HOH . G 5 HOH A 79 2079 2079 HOH HOH . G 5 HOH A 80 2080 2080 HOH HOH . G 5 HOH A 81 2081 2081 HOH HOH . G 5 HOH A 82 2082 2082 HOH HOH . G 5 HOH A 83 2083 2083 HOH HOH . G 5 HOH A 84 2084 2084 HOH HOH . G 5 HOH A 85 2085 2085 HOH HOH . G 5 HOH A 86 2086 2086 HOH HOH . G 5 HOH A 87 2087 2087 HOH HOH . G 5 HOH A 88 2088 2088 HOH HOH . G 5 HOH A 89 2089 2089 HOH HOH . G 5 HOH A 90 2090 2090 HOH HOH . G 5 HOH A 91 2091 2091 HOH HOH . G 5 HOH A 92 2092 2092 HOH HOH . G 5 HOH A 93 2093 2093 HOH HOH . G 5 HOH A 94 2094 2094 HOH HOH . G 5 HOH A 95 2095 2095 HOH HOH . G 5 HOH A 96 2096 2096 HOH HOH . G 5 HOH A 97 2097 2097 HOH HOH . G 5 HOH A 98 2098 2098 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . F 4 43.794 45.312 62.829 1 74.59 ? CAC FLC 1444 A 1 HETATM 2 C CA FLC . . . F 4 44.08 44.013 62.031 1 74.74 ? CA FLC 1444 A 1 HETATM 3 C CB FLC . . . F 4 45.093 44.031 60.841 1 75.3 ? CB FLC 1444 A 1 HETATM 4 C CBC FLC . . . F 4 46.23 42.986 61.063 1 76.3 ? CBC FLC 1444 A 1 HETATM 5 C CG FLC . . . F 4 45.819 45.401 60.604 1 74.45 ? CG FLC 1444 A 1 HETATM 6 C CGC FLC . . . F 4 44.993 46.608 60.092 1 72.68 ? CGC FLC 1444 A 1 HETATM 7 O OA1 FLC . . . F 4 42.61 45.74 62.829 1 73.17 ? OA1 FLC 1444 A 1 HETATM 8 O OA2 FLC . . . F 4 44.753 45.844 63.429 1 74.41 ? OA2 FLC 1444 A 1 HETATM 9 O OB1 FLC . . . F 4 46.131 42.19 62.028 1 76.28 ? OB1 FLC 1444 A 1 HETATM 10 O OB2 FLC . . . F 4 47.188 42.996 60.253 1 76.06 ? OB2 FLC 1444 A 1 HETATM 11 O OG1 FLC . . . F 4 43.868 46.791 60.577 1 70.92 ? OG1 FLC 1444 A 1 HETATM 12 O OG2 FLC . . . F 4 45.517 47.352 59.239 1 70.94 ? OG2 FLC 1444 A 1 HETATM 13 O OHB FLC . . . F 4 44.378 43.614 59.68 1 72.99 ? OHB FLC 1444 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #