data_2BHH # _model_server_result.job_id eflQ3hjcohiFQ8NrrJQsKg _model_server_result.datetime_utc '2024-12-26 13:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1299}' # _entry.id 2BHH # _exptl.entry_id 2BHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.5 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2E,3S)-3-HYDROXY-5'-[(4-HYDROXYPIPERIDIN-1-YL)SULFONYL]-3-METHYL-1,3-DIHYDRO-2,3'-BIINDOL-2'(1'H)-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BHH _cell.length_a 53.679 _cell.length_b 69.526 _cell.length_c 71.168 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 N3 O5 S' _chem_comp.formula_weight 441.5 _chem_comp.id RYU _chem_comp.mon_nstd_flag . _chem_comp.name "(2E,3S)-3-HYDROXY-5'-[(4-HYDROXYPIPERIDIN-1-YL)SULFONYL]-3-METHYL-1,3-DIHYDRO-2,3'-BIINDOL-2'(1'H)-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RYU doub 277 n y C1 C6 RYU sing 278 n y C1 H1 RYU sing 279 n n C2 C3 RYU sing 280 n y C2 H2 RYU sing 281 n n C3 C4 RYU doub 282 n y C3 H3 RYU sing 283 n n C4 C5 RYU sing 284 n y C4 H4 RYU sing 285 n n C5 C6 RYU doub 286 n y C5 N9 RYU sing 287 n n C6 C7 RYU sing 288 n n C7 C71 RYU sing 289 n n C7 O71 RYU sing 290 n n C7 C8 RYU sing 291 n n C71 H711 RYU sing 292 n n C71 H712 RYU sing 293 n n C71 H713 RYU sing 294 n n O71 H71 RYU sing 295 n n C8 N9 RYU sing 296 n n C8 C10 RYU doub 297 z n N9 H9 RYU sing 298 n n C10 C11 RYU sing 299 n n C10 C14 RYU sing 300 n n C11 O11 RYU doub 301 n n C11 N12 RYU sing 302 n n N12 C13 RYU sing 303 n n N12 H12 RYU sing 304 n n C13 C14 RYU doub 305 n y C13 C18 RYU sing 306 n y C14 C15 RYU sing 307 n y C15 C16 RYU doub 308 n y C15 H15 RYU sing 309 n n C16 C17 RYU sing 310 n y C16 S19 RYU sing 311 n n C17 C18 RYU doub 312 n y C17 H17 RYU sing 313 n n C18 H18 RYU sing 314 n n S19 O19 RYU doub 315 n n S19 O1 RYU doub 316 n n S19 N20 RYU sing 317 n n N20 C21 RYU sing 318 n n N20 C25 RYU sing 319 n n C21 C22 RYU sing 320 n n C21 H211 RYU sing 321 n n C21 H212 RYU sing 322 n n C22 C23 RYU sing 323 n n C22 H221 RYU sing 324 n n C22 H222 RYU sing 325 n n C23 O23 RYU sing 326 n n C23 C24 RYU sing 327 n n C23 H23 RYU sing 328 n n O23 HA RYU sing 329 n n C24 C25 RYU sing 330 n n C24 H241 RYU sing 331 n n C24 H242 RYU sing 332 n n C25 H251 RYU sing 333 n n C25 H252 RYU sing 334 n n # _atom_sites.entry_id 2BHH _atom_sites.fract_transf_matrix[1][1] 0.018629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RYU A 1 1299 1299 RYU RYU . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RYU . . . B 2 3.825 24.406 7.696 1 45.78 ? C1 RYU 1299 A 1 HETATM 2 C C2 RYU . . . B 2 5.096 24.09 7.067 1 46.82 ? C2 RYU 1299 A 1 HETATM 3 C C3 RYU . . . B 2 5.496 24.694 5.807 1 47.83 ? C3 RYU 1299 A 1 HETATM 4 C C4 RYU . . . B 2 4.758 25.817 5.25 1 47.96 ? C4 RYU 1299 A 1 HETATM 5 C C5 RYU . . . B 2 3.588 26.25 5.99 1 46.58 ? C5 RYU 1299 A 1 HETATM 6 C C6 RYU . . . B 2 3.069 25.489 7.103 1 45.9 ? C6 RYU 1299 A 1 HETATM 7 C C7 RYU . . . B 2 1.766 25.991 7.489 1 45.21 ? C7 RYU 1299 A 1 HETATM 8 C C71 RYU . . . B 2 1.769 26.231 8.974 1 45.56 ? C71 RYU 1299 A 1 HETATM 9 O O71 RYU . . . B 2 0.809 25.103 7.207 1 44.95 ? O71 RYU 1299 A 1 HETATM 10 C C8 RYU . . . B 2 1.714 27.198 6.676 1 45.52 ? C8 RYU 1299 A 1 HETATM 11 N N9 RYU . . . B 2 2.776 27.383 5.761 1 45.92 ? N9 RYU 1299 A 1 HETATM 12 C C10 RYU . . . B 2 0.725 28.249 6.797 1 45.81 ? C10 RYU 1299 A 1 HETATM 13 C C11 RYU . . . B 2 0.855 29.681 6.329 1 43.63 ? C11 RYU 1299 A 1 HETATM 14 O O11 RYU . . . B 2 1.776 30.013 5.589 1 42.14 ? O11 RYU 1299 A 1 HETATM 15 N N12 RYU . . . B 2 -0.018 30.578 6.773 1 43.37 ? N12 RYU 1299 A 1 HETATM 16 C C13 RYU . . . B 2 -0.807 29.774 7.628 1 46.58 ? C13 RYU 1299 A 1 HETATM 17 C C14 RYU . . . B 2 -0.431 28.372 7.658 1 47.9 ? C14 RYU 1299 A 1 HETATM 18 C C15 RYU . . . B 2 -1.055 27.351 8.485 1 50.04 ? C15 RYU 1299 A 1 HETATM 19 C C16 RYU . . . B 2 -1.975 27.886 9.469 1 53.13 ? C16 RYU 1299 A 1 HETATM 20 C C17 RYU . . . B 2 -2.455 29.259 9.404 1 52.08 ? C17 RYU 1299 A 1 HETATM 21 C C18 RYU . . . B 2 -1.878 30.234 8.49 1 49.51 ? C18 RYU 1299 A 1 HETATM 22 S S19 RYU . . . B 2 -2.562 27.004 10.927 1 56.7 ? S19 RYU 1299 A 1 HETATM 23 O O19 RYU . . . B 2 -1.514 27.557 12.212 1 56.65 ? O19 RYU 1299 A 1 HETATM 24 O O1 RYU . . . B 2 -4.158 27.658 10.824 1 53.99 ? O1 RYU 1299 A 1 HETATM 25 N N20 RYU . . . B 2 -2.512 25.242 11.153 1 57.36 ? N20 RYU 1299 A 1 HETATM 26 C C21 RYU . . . B 2 -2.302 24.618 12.479 1 59.85 ? C21 RYU 1299 A 1 HETATM 27 C C22 RYU . . . B 2 -1.004 23.819 12.532 1 60.76 ? C22 RYU 1299 A 1 HETATM 28 C C23 RYU . . . B 2 -0.836 22.868 11.344 1 61.9 ? C23 RYU 1299 A 1 HETATM 29 O O23 RYU . . . B 2 0.349 22.064 11.374 1 63.16 ? O23 RYU 1299 A 1 HETATM 30 C C24 RYU . . . B 2 -1.071 23.592 10.02 1 61.18 ? C24 RYU 1299 A 1 HETATM 31 C C25 RYU . . . B 2 -2.385 24.35 9.992 1 59.22 ? C25 RYU 1299 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #