data_2BI4 # _model_server_result.job_id f38_cqUK_ARMKUYuecf2Og _model_server_result.datetime_utc '2025-01-02 23:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1385}' # _entry.id 2BI4 # _exptl.entry_id 2BI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BI4 _cell.length_a 109.422 _cell.length_b 109.422 _cell.length_c 182.459 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 205 A ASP 196 1_555 C FE FE . A FE 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A NE2 HIS 209 A HIS 200 1_555 C FE FE . A FE 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc3 A NE2 HIS 272 A HIS 263 1_555 C FE FE . A FE 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc4 A NE2 HIS 286 A HIS 277 1_555 C FE FE . A FE 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc5 B OD1 ASP 205 B ASP 1196 1_555 F FE FE . B FE 2384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 B NE2 HIS 209 B HIS 1200 1_555 F FE FE . B FE 2384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 B NE2 HIS 272 B HIS 1263 1_555 F FE FE . B FE 2384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B NE2 HIS 286 B HIS 1277 1_555 F FE FE . B FE 2384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 2BI4 _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0.005276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 1384 1384 FE FE . D 3 NAD A 1 1385 1385 NAD NAD . E 4 CL B 1 500 500 CL CL . F 2 FE B 1 2384 2384 FE FE . G 3 NAD B 1 2385 2385 NAD NAD . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . I 5 HOH B 10 2010 2010 HOH HOH . I 5 HOH B 11 2011 2011 HOH HOH . I 5 HOH B 12 2012 2012 HOH HOH . I 5 HOH B 13 2013 2013 HOH HOH . I 5 HOH B 14 2014 2014 HOH HOH . I 5 HOH B 15 2015 2015 HOH HOH . I 5 HOH B 16 2016 2016 HOH HOH . I 5 HOH B 17 2017 2017 HOH HOH . I 5 HOH B 18 2018 2018 HOH HOH . I 5 HOH B 19 2019 2019 HOH HOH . I 5 HOH B 20 2020 2020 HOH HOH . I 5 HOH B 21 2021 2021 HOH HOH . I 5 HOH B 22 2022 2022 HOH HOH . I 5 HOH B 23 2023 2023 HOH HOH . I 5 HOH B 24 2024 2024 HOH HOH . I 5 HOH B 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 8.214 79.849 80.466 1 50.8 ? PA NAD 1385 A 1 HETATM 2 O O1A NAD . . . D 3 7.022 80.538 80.835 1 51.18 ? O1A NAD 1385 A 1 HETATM 3 O O2A NAD . . . D 3 9.593 80.385 80.642 1 51.25 ? O2A NAD 1385 A 1 HETATM 4 O O5B NAD . . . D 3 8.159 79.441 78.917 1 50.24 ? O5B NAD 1385 A 1 HETATM 5 C C5B NAD . . . D 3 7.049 78.665 78.525 1 50.07 ? C5B NAD 1385 A 1 HETATM 6 C C4B NAD . . . D 3 6.964 78.741 76.98 1 51.88 ? C4B NAD 1385 A 1 HETATM 7 O O4B NAD . . . D 3 5.712 78.029 76.816 1 53.83 ? O4B NAD 1385 A 1 HETATM 8 C C3B NAD . . . D 3 6.686 80.155 76.464 1 53.09 ? C3B NAD 1385 A 1 HETATM 9 O O3B NAD . . . D 3 7.157 80.162 75.123 1 53.49 ? O3B NAD 1385 A 1 HETATM 10 C C2B NAD . . . D 3 5.192 80.309 76.551 1 53.91 ? C2B NAD 1385 A 1 HETATM 11 O O2B NAD . . . D 3 4.616 81.169 75.588 1 54.57 ? O2B NAD 1385 A 1 HETATM 12 C C1B NAD . . . D 3 4.642 78.859 76.418 1 53.98 ? C1B NAD 1385 A 1 HETATM 13 N N9A NAD . . . D 3 3.558 78.681 77.361 1 53.06 ? N9A NAD 1385 A 1 HETATM 14 C C8A NAD . . . D 3 3.469 79.025 78.69 1 53.29 ? C8A NAD 1385 A 1 HETATM 15 N N7A NAD . . . D 3 2.315 78.712 79.236 1 53.25 ? N7A NAD 1385 A 1 HETATM 16 C C5A NAD . . . D 3 1.602 78.144 78.189 1 53.59 ? C5A NAD 1385 A 1 HETATM 17 C C6A NAD . . . D 3 0.296 77.593 78.156 1 54.51 ? C6A NAD 1385 A 1 HETATM 18 N N6A NAD . . . D 3 -0.565 77.547 79.189 1 55.69 ? N6A NAD 1385 A 1 HETATM 19 N N1A NAD . . . D 3 -0.146 77.095 76.942 1 53.5 ? N1A NAD 1385 A 1 HETATM 20 C C2A NAD . . . D 3 0.67 77.107 75.796 1 51.41 ? C2A NAD 1385 A 1 HETATM 21 N N3A NAD . . . D 3 1.947 77.617 75.808 1 49.25 ? N3A NAD 1385 A 1 HETATM 22 C C4A NAD . . . D 3 2.375 78.137 77.026 1 52.4 ? C4A NAD 1385 A 1 HETATM 23 O O3 NAD . . . D 3 8.239 78.391 81.096 1 50.21 ? O3 NAD 1385 A 1 HETATM 24 P PN NAD . . . D 3 7.999 77.823 82.538 1 49.38 ? PN NAD 1385 A 1 HETATM 25 O O1N NAD . . . D 3 8.489 76.438 82.567 1 50.64 ? O1N NAD 1385 A 1 HETATM 26 O O2N NAD . . . D 3 6.575 78.015 82.827 1 47.59 ? O2N NAD 1385 A 1 HETATM 27 O O5D NAD . . . D 3 8.946 78.724 83.451 1 49.86 ? O5D NAD 1385 A 1 HETATM 28 C C5D NAD . . . D 3 10.305 78.293 83.779 1 52.72 ? C5D NAD 1385 A 1 HETATM 29 C C4D NAD . . . D 3 11.009 79.406 84.509 1 55.97 ? C4D NAD 1385 A 1 HETATM 30 O O4D NAD . . . D 3 10.901 79.259 85.944 1 58.51 ? O4D NAD 1385 A 1 HETATM 31 C C3D NAD . . . D 3 12.54 79.499 84.23 1 56.36 ? C3D NAD 1385 A 1 HETATM 32 O O3D NAD . . . D 3 12.934 80.879 84.059 1 55.24 ? O3D NAD 1385 A 1 HETATM 33 C C2D NAD . . . D 3 13.14 78.817 85.465 1 57.18 ? C2D NAD 1385 A 1 HETATM 34 O O2D NAD . . . D 3 14.497 79.166 85.667 1 56.54 ? O2D NAD 1385 A 1 HETATM 35 C C1D NAD . . . D 3 12.217 79.268 86.555 1 58.4 ? C1D NAD 1385 A 1 HETATM 36 N N1N NAD . . . D 3 12.127 78.354 87.775 1 59.9 ? N1N NAD 1385 A 1 HETATM 37 C C2N NAD . . . D 3 12.909 78.57 88.969 1 60.41 ? C2N NAD 1385 A 1 HETATM 38 C C3N NAD . . . D 3 12.714 77.71 90.077 1 58.69 ? C3N NAD 1385 A 1 HETATM 39 C C7N NAD . . . D 3 13.522 77.894 91.384 1 58.2 ? C7N NAD 1385 A 1 HETATM 40 O O7N NAD . . . D 3 13.313 77.077 92.289 1 58.53 ? O7N NAD 1385 A 1 HETATM 41 N N7N NAD . . . D 3 14.388 78.857 91.537 1 58.6 ? N7N NAD 1385 A 1 HETATM 42 C C4N NAD . . . D 3 11.752 76.614 89.989 1 58.04 ? C4N NAD 1385 A 1 HETATM 43 C C5N NAD . . . D 3 11.018 76.436 88.78 1 58.64 ? C5N NAD 1385 A 1 HETATM 44 C C6N NAD . . . D 3 11.195 77.283 87.679 1 58.18 ? C6N NAD 1385 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #