data_2BIF # _model_server_result.job_id D3h_bmexx5YOFctS2ujElw _model_server_result.datetime_utc '2024-11-26 09:40:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":515}' # _entry.id 2BIF # _exptl.entry_id 2BIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 116.9 _cell.angle_beta 99.31 _cell.angle_gamma 105.2 _cell.entry_id 2BIF _cell.length_a 61.74 _cell.length_b 73.51 _cell.length_c 76.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 53 A THR 52 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A OD1 ASP 129 A ASP 128 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc3 H O1B ANP . A ANP 500 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 H O1G ANP . A ANP 500 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 387 n n P O2 PO4 sing 388 n n P O3 PO4 sing 389 n n P O4 PO4 sing 390 n n # _atom_sites.entry_id 2BIF _atom_sites.fract_transf_matrix[1][1] 0.016197 _atom_sites.fract_transf_matrix[1][2] 0.004401 _atom_sites.fract_transf_matrix[1][3] 0.005784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014097 _atom_sites.fract_transf_matrix[2][3] 0.008573 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 510 510 BOG BOG . D 3 F6P A 1 520 520 F6P F6P . E 2 BOG A 1 555 555 BOG BOG . F 4 MG A 1 501 501 MG MG . G 5 PO4 A 1 515 515 PO4 PO4 . H 6 ANP A 1 500 500 ANP APP . I 7 SIN A 1 505 505 SIN SUX . J 2 BOG B 1 525 525 BOG BOG . K 3 F6P B 1 550 550 F6P F6P . L 5 PO4 B 1 530 530 PO4 PO4 . M 5 PO4 B 1 545 545 PO4 PO4 . N 7 SIN B 1 535 535 SIN SUX . O 8 HOH A 1 600 600 HOH HOH . O 8 HOH A 2 601 601 HOH HOH . O 8 HOH A 3 602 602 HOH HOH . O 8 HOH A 4 603 603 HOH HOH . O 8 HOH A 5 604 604 HOH HOH . O 8 HOH A 6 605 605 HOH HOH . O 8 HOH A 7 606 606 HOH HOH . O 8 HOH A 8 607 607 HOH HOH . O 8 HOH A 9 608 608 HOH HOH . O 8 HOH A 10 609 609 HOH HOH . O 8 HOH A 11 610 610 HOH HOH . O 8 HOH A 12 611 611 HOH HOH . O 8 HOH A 13 612 612 HOH HOH . O 8 HOH A 14 613 613 HOH HOH . O 8 HOH A 15 614 614 HOH HOH . O 8 HOH A 16 615 615 HOH HOH . O 8 HOH A 17 616 616 HOH HOH . O 8 HOH A 18 617 617 HOH HOH . O 8 HOH A 19 618 618 HOH HOH . O 8 HOH A 20 619 619 HOH HOH . O 8 HOH A 21 620 620 HOH HOH . O 8 HOH A 22 621 621 HOH HOH . O 8 HOH A 23 622 622 HOH HOH . O 8 HOH A 24 623 623 HOH HOH . O 8 HOH A 25 624 624 HOH HOH . O 8 HOH A 26 625 625 HOH HOH . O 8 HOH A 27 626 626 HOH HOH . O 8 HOH A 28 627 627 HOH HOH . O 8 HOH A 29 628 628 HOH HOH . O 8 HOH A 30 629 629 HOH HOH . O 8 HOH A 31 630 630 HOH HOH . O 8 HOH A 32 631 631 HOH HOH . O 8 HOH A 33 632 632 HOH HOH . O 8 HOH A 34 633 633 HOH HOH . O 8 HOH A 35 634 634 HOH HOH . O 8 HOH A 36 635 635 HOH HOH . O 8 HOH A 37 636 636 HOH HOH . O 8 HOH A 38 637 637 HOH HOH . O 8 HOH A 39 638 638 HOH HOH . O 8 HOH A 40 639 639 HOH HOH . O 8 HOH A 41 640 640 HOH HOH . O 8 HOH A 42 641 641 HOH HOH . O 8 HOH A 43 642 642 HOH HOH . O 8 HOH A 44 643 643 HOH HOH . O 8 HOH A 45 644 644 HOH HOH . O 8 HOH A 46 645 645 HOH HOH . O 8 HOH A 47 646 646 HOH HOH . O 8 HOH A 48 648 648 HOH HOH . O 8 HOH A 49 649 649 HOH HOH . O 8 HOH A 50 650 650 HOH HOH . O 8 HOH A 51 651 651 HOH HOH . O 8 HOH A 52 652 652 HOH HOH . O 8 HOH A 53 653 653 HOH HOH . O 8 HOH A 54 654 654 HOH HOH . O 8 HOH A 55 655 655 HOH HOH . O 8 HOH A 56 656 656 HOH HOH . O 8 HOH A 57 657 657 HOH HOH . O 8 HOH A 58 658 658 HOH HOH . O 8 HOH A 59 659 659 HOH HOH . O 8 HOH A 60 660 660 HOH HOH . O 8 HOH A 61 661 661 HOH HOH . O 8 HOH A 62 662 662 HOH HOH . O 8 HOH A 63 663 663 HOH HOH . O 8 HOH A 64 664 664 HOH HOH . O 8 HOH A 65 665 665 HOH HOH . O 8 HOH A 66 667 667 HOH HOH . O 8 HOH A 67 668 668 HOH HOH . O 8 HOH A 68 669 669 HOH HOH . O 8 HOH A 69 670 670 HOH HOH . O 8 HOH A 70 671 671 HOH HOH . O 8 HOH A 71 672 672 HOH HOH . O 8 HOH A 72 673 673 HOH HOH . O 8 HOH A 73 674 674 HOH HOH . O 8 HOH A 74 675 675 HOH HOH . O 8 HOH A 75 676 676 HOH HOH . O 8 HOH A 76 677 677 HOH HOH . O 8 HOH A 77 678 678 HOH HOH . O 8 HOH A 78 679 679 HOH HOH . O 8 HOH A 79 680 680 HOH HOH . O 8 HOH A 80 681 681 HOH HOH . O 8 HOH A 81 682 682 HOH HOH . O 8 HOH A 82 683 683 HOH HOH . O 8 HOH A 83 685 685 HOH HOH . O 8 HOH A 84 686 686 HOH HOH . O 8 HOH A 85 687 687 HOH HOH . O 8 HOH A 86 688 688 HOH HOH . O 8 HOH A 87 689 689 HOH HOH . O 8 HOH A 88 690 690 HOH HOH . O 8 HOH A 89 691 691 HOH HOH . O 8 HOH A 90 692 692 HOH HOH . O 8 HOH A 91 693 693 HOH HOH . O 8 HOH A 92 694 694 HOH HOH . O 8 HOH A 93 695 695 HOH HOH . O 8 HOH A 94 696 696 HOH HOH . O 8 HOH A 95 697 697 HOH HOH . O 8 HOH A 96 698 698 HOH HOH . O 8 HOH A 97 699 699 HOH HOH . O 8 HOH A 98 700 700 HOH HOH . O 8 HOH A 99 701 701 HOH HOH . O 8 HOH A 100 702 702 HOH HOH . O 8 HOH A 101 703 703 HOH HOH . O 8 HOH A 102 704 704 HOH HOH . O 8 HOH A 103 705 705 HOH HOH . O 8 HOH A 104 706 706 HOH HOH . O 8 HOH A 105 707 707 HOH HOH . O 8 HOH A 106 708 708 HOH HOH . O 8 HOH A 107 709 709 HOH HOH . O 8 HOH A 108 710 710 HOH HOH . O 8 HOH A 109 711 711 HOH HOH . O 8 HOH A 110 712 712 HOH HOH . O 8 HOH A 111 713 713 HOH HOH . O 8 HOH A 112 714 714 HOH HOH . O 8 HOH A 113 715 715 HOH HOH . O 8 HOH A 114 716 716 HOH HOH . O 8 HOH A 115 817 817 HOH HOH . O 8 HOH A 116 818 818 HOH HOH . O 8 HOH A 117 908 908 HOH HOH . O 8 HOH A 118 922 922 HOH HOH . O 8 HOH A 119 936 936 HOH HOH . O 8 HOH A 120 939 939 HOH HOH . O 8 HOH A 121 944 944 HOH HOH . O 8 HOH A 122 957 957 HOH HOH . P 8 HOH B 1 647 647 HOH HOH . P 8 HOH B 2 666 666 HOH HOH . P 8 HOH B 3 684 684 HOH HOH . P 8 HOH B 4 800 800 HOH HOH . P 8 HOH B 5 801 801 HOH HOH . P 8 HOH B 6 802 802 HOH HOH . P 8 HOH B 7 803 803 HOH HOH . P 8 HOH B 8 804 804 HOH HOH . P 8 HOH B 9 805 805 HOH HOH . P 8 HOH B 10 806 806 HOH HOH . P 8 HOH B 11 807 807 HOH HOH . P 8 HOH B 12 808 808 HOH HOH . P 8 HOH B 13 809 809 HOH HOH . P 8 HOH B 14 810 810 HOH HOH . P 8 HOH B 15 811 811 HOH HOH . P 8 HOH B 16 812 812 HOH HOH . P 8 HOH B 17 813 813 HOH HOH . P 8 HOH B 18 814 814 HOH HOH . P 8 HOH B 19 815 815 HOH HOH . P 8 HOH B 20 816 816 HOH HOH . P 8 HOH B 21 819 819 HOH HOH . P 8 HOH B 22 820 820 HOH HOH . P 8 HOH B 23 821 821 HOH HOH . P 8 HOH B 24 822 822 HOH HOH . P 8 HOH B 25 823 823 HOH HOH . P 8 HOH B 26 824 824 HOH HOH . P 8 HOH B 27 825 825 HOH HOH . P 8 HOH B 28 826 826 HOH HOH . P 8 HOH B 29 827 827 HOH HOH . P 8 HOH B 30 828 828 HOH HOH . P 8 HOH B 31 829 829 HOH HOH . P 8 HOH B 32 830 830 HOH HOH . P 8 HOH B 33 831 831 HOH HOH . P 8 HOH B 34 832 832 HOH HOH . P 8 HOH B 35 833 833 HOH HOH . P 8 HOH B 36 834 834 HOH HOH . P 8 HOH B 37 835 835 HOH HOH . P 8 HOH B 38 836 836 HOH HOH . P 8 HOH B 39 837 837 HOH HOH . P 8 HOH B 40 838 838 HOH HOH . P 8 HOH B 41 839 839 HOH HOH . P 8 HOH B 42 840 840 HOH HOH . P 8 HOH B 43 841 841 HOH HOH . P 8 HOH B 44 842 842 HOH HOH . P 8 HOH B 45 843 843 HOH HOH . P 8 HOH B 46 844 844 HOH HOH . P 8 HOH B 47 845 845 HOH HOH . P 8 HOH B 48 846 846 HOH HOH . P 8 HOH B 49 847 847 HOH HOH . P 8 HOH B 50 848 848 HOH HOH . P 8 HOH B 51 849 849 HOH HOH . P 8 HOH B 52 850 850 HOH HOH . P 8 HOH B 53 851 851 HOH HOH . P 8 HOH B 54 852 852 HOH HOH . P 8 HOH B 55 853 853 HOH HOH . P 8 HOH B 56 854 854 HOH HOH . P 8 HOH B 57 855 855 HOH HOH . P 8 HOH B 58 856 856 HOH HOH . P 8 HOH B 59 857 857 HOH HOH . P 8 HOH B 60 858 858 HOH HOH . P 8 HOH B 61 859 859 HOH HOH . P 8 HOH B 62 860 860 HOH HOH . P 8 HOH B 63 861 861 HOH HOH . P 8 HOH B 64 862 862 HOH HOH . P 8 HOH B 65 863 863 HOH HOH . P 8 HOH B 66 864 864 HOH HOH . P 8 HOH B 67 865 865 HOH HOH . P 8 HOH B 68 866 866 HOH HOH . P 8 HOH B 69 867 867 HOH HOH . P 8 HOH B 70 868 868 HOH HOH . P 8 HOH B 71 869 869 HOH HOH . P 8 HOH B 72 870 870 HOH HOH . P 8 HOH B 73 871 871 HOH HOH . P 8 HOH B 74 872 872 HOH HOH . P 8 HOH B 75 873 873 HOH HOH . P 8 HOH B 76 874 874 HOH HOH . P 8 HOH B 77 875 875 HOH HOH . P 8 HOH B 78 876 876 HOH HOH . P 8 HOH B 79 877 877 HOH HOH . P 8 HOH B 80 878 878 HOH HOH . P 8 HOH B 81 879 879 HOH HOH . P 8 HOH B 82 880 880 HOH HOH . P 8 HOH B 83 881 881 HOH HOH . P 8 HOH B 84 882 882 HOH HOH . P 8 HOH B 85 883 883 HOH HOH . P 8 HOH B 86 884 884 HOH HOH . P 8 HOH B 87 885 885 HOH HOH . P 8 HOH B 88 886 886 HOH HOH . P 8 HOH B 89 887 887 HOH HOH . P 8 HOH B 90 888 888 HOH HOH . P 8 HOH B 91 889 889 HOH HOH . P 8 HOH B 92 890 890 HOH HOH . P 8 HOH B 93 891 891 HOH HOH . P 8 HOH B 94 892 892 HOH HOH . P 8 HOH B 95 893 893 HOH HOH . P 8 HOH B 96 894 894 HOH HOH . P 8 HOH B 97 895 895 HOH HOH . P 8 HOH B 98 896 896 HOH HOH . P 8 HOH B 99 897 897 HOH HOH . P 8 HOH B 100 898 898 HOH HOH . P 8 HOH B 101 899 899 HOH HOH . P 8 HOH B 102 900 900 HOH HOH . P 8 HOH B 103 901 901 HOH HOH . P 8 HOH B 104 902 902 HOH HOH . P 8 HOH B 105 903 903 HOH HOH . P 8 HOH B 106 904 904 HOH HOH . P 8 HOH B 107 905 905 HOH HOH . P 8 HOH B 108 906 906 HOH HOH . P 8 HOH B 109 907 907 HOH HOH . P 8 HOH B 110 909 909 HOH HOH . P 8 HOH B 111 910 910 HOH HOH . P 8 HOH B 112 911 911 HOH HOH . P 8 HOH B 113 912 912 HOH HOH . P 8 HOH B 114 913 913 HOH HOH . P 8 HOH B 115 914 914 HOH HOH . P 8 HOH B 116 915 915 HOH HOH . P 8 HOH B 117 916 916 HOH HOH . P 8 HOH B 118 917 917 HOH HOH . P 8 HOH B 119 918 918 HOH HOH . P 8 HOH B 120 919 919 HOH HOH . P 8 HOH B 121 920 920 HOH HOH . P 8 HOH B 122 921 921 HOH HOH . P 8 HOH B 123 923 923 HOH HOH . P 8 HOH B 124 924 924 HOH HOH . P 8 HOH B 125 925 925 HOH HOH . P 8 HOH B 126 926 926 HOH HOH . P 8 HOH B 127 927 927 HOH HOH . P 8 HOH B 128 928 928 HOH HOH . P 8 HOH B 129 929 929 HOH HOH . P 8 HOH B 130 930 930 HOH HOH . P 8 HOH B 131 931 931 HOH HOH . P 8 HOH B 132 932 932 HOH HOH . P 8 HOH B 133 933 933 HOH HOH . P 8 HOH B 134 934 934 HOH HOH . P 8 HOH B 135 935 935 HOH HOH . P 8 HOH B 136 937 937 HOH HOH . P 8 HOH B 137 938 938 HOH HOH . P 8 HOH B 138 940 940 HOH HOH . P 8 HOH B 139 941 941 HOH HOH . P 8 HOH B 140 942 942 HOH HOH . P 8 HOH B 141 943 943 HOH HOH . P 8 HOH B 142 945 945 HOH HOH . P 8 HOH B 143 946 946 HOH HOH . P 8 HOH B 144 947 947 HOH HOH . P 8 HOH B 145 948 948 HOH HOH . P 8 HOH B 146 949 949 HOH HOH . P 8 HOH B 147 950 950 HOH HOH . P 8 HOH B 148 951 951 HOH HOH . P 8 HOH B 149 952 952 HOH HOH . P 8 HOH B 150 953 953 HOH HOH . P 8 HOH B 151 954 954 HOH HOH . P 8 HOH B 152 955 955 HOH HOH . P 8 HOH B 153 956 956 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 5 73.65 -37.501 -4.783 1 48.23 ? P PO4 515 A 1 HETATM 2 O O1 PO4 . . . G 5 74.358 -38.829 -5.033 1 49.45 ? O1 PO4 515 A 1 HETATM 3 O O2 PO4 . . . G 5 74.364 -36.347 -5.441 1 49.22 ? O2 PO4 515 A 1 HETATM 4 O O3 PO4 . . . G 5 72.211 -37.524 -5.226 1 44.42 ? O3 PO4 515 A 1 HETATM 5 O O4 PO4 . . . G 5 73.692 -37.284 -3.322 1 53.92 ? O4 PO4 515 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #