data_2BIL # _model_server_result.job_id k-HcBmQTxxbTAMHtD0jsVQ _model_server_result.datetime_utc '2024-11-29 23:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1307}' # _entry.id 2BIL # _exptl.entry_id 2BIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.484 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BIL _cell.length_a 98.1 _cell.length_b 98.1 _cell.length_c 80.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 N4 O2' _chem_comp.formula_weight 412.484 _chem_comp.id BI1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RBT205 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD NBC BI1 sing 70 n n CBD HBD1 BI1 sing 71 n n CBD HBD2 BI1 sing 72 n n CBD HBD3 BI1 sing 73 n n NBC CBE BI1 sing 74 n n NBC CBB BI1 sing 75 n n CBE HBE1 BI1 sing 76 n n CBE HBE2 BI1 sing 77 n n CBE HBE3 BI1 sing 78 n n CBB CBA BI1 sing 79 n n CBB HBB1 BI1 sing 80 n n CBB HBB2 BI1 sing 81 n n CBA CAY BI1 sing 82 n n CBA HBA1 BI1 sing 83 n n CBA HBA2 BI1 sing 84 n n CAY NAH BI1 sing 85 n n CAY HAY1 BI1 sing 86 n n CAY HAY2 BI1 sing 87 n n NAH CAW BI1 sing 88 n y NAH CAE BI1 sing 89 n y CAW CAG BI1 doub 90 n y CAW HAW BI1 sing 91 n n CAE CAF BI1 sing 92 n y CAE CAD BI1 doub 93 n y CAF CAA BI1 doub 94 n y CAF HAF BI1 sing 95 n n CAA CAB BI1 sing 96 n y CAA HAA BI1 sing 97 n n CAB CAC BI1 doub 98 n y CAB HAB BI1 sing 99 n n CAC CAD BI1 sing 100 n y CAC HAC BI1 sing 101 n n CAD CAG BI1 sing 102 n y CAG CAI BI1 sing 103 n n CAI CAT BI1 sing 104 n n CAI CAJ BI1 doub 105 n n CAT OAZ BI1 doub 106 n n CAT NAU BI1 sing 107 n n NAU CAV BI1 sing 108 n n NAU HAU BI1 sing 109 n n CAV OAX BI1 doub 110 n n CAV CAJ BI1 sing 111 n n CAJ CAK BI1 sing 112 n n CAK CAM BI1 sing 113 n y CAK CAL BI1 doub 114 n y CAM CAP BI1 sing 115 n y CAM CAN BI1 doub 116 n y CAP CAQ BI1 doub 117 n y CAP HAP BI1 sing 118 n n CAQ CAR BI1 sing 119 n y CAQ HAQ BI1 sing 120 n n CAR CAS BI1 doub 121 n y CAR HAR BI1 sing 122 n n CAS CAN BI1 sing 123 n y CAS HAS BI1 sing 124 n n CAN NAO BI1 sing 125 n y NAO CAL BI1 sing 126 n y NAO HAO BI1 sing 127 n n CAL HAL BI1 sing 128 n n # _atom_sites.entry_id 2BIL _atom_sites.fract_transf_matrix[1][1] 0.010194 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BI1 B 1 1307 1307 BI1 BI1 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH B 1 2001 2001 HOH HOH . E 4 HOH B 2 2002 2002 HOH HOH . E 4 HOH B 3 2003 2003 HOH HOH . E 4 HOH B 4 2004 2004 HOH HOH . E 4 HOH B 5 2005 2005 HOH HOH . E 4 HOH B 6 2006 2006 HOH HOH . E 4 HOH B 7 2007 2007 HOH HOH . E 4 HOH B 8 2008 2008 HOH HOH . E 4 HOH B 9 2009 2009 HOH HOH . E 4 HOH B 10 2010 2010 HOH HOH . E 4 HOH B 11 2011 2011 HOH HOH . E 4 HOH B 12 2012 2012 HOH HOH . E 4 HOH B 13 2013 2013 HOH HOH . E 4 HOH B 14 2014 2014 HOH HOH . E 4 HOH B 15 2015 2015 HOH HOH . E 4 HOH B 16 2016 2016 HOH HOH . E 4 HOH B 17 2017 2017 HOH HOH . E 4 HOH B 18 2018 2018 HOH HOH . E 4 HOH B 19 2019 2019 HOH HOH . E 4 HOH B 20 2020 2020 HOH HOH . E 4 HOH B 21 2021 2021 HOH HOH . E 4 HOH B 22 2022 2022 HOH HOH . E 4 HOH B 23 2023 2023 HOH HOH . E 4 HOH B 24 2024 2024 HOH HOH . E 4 HOH B 25 2025 2025 HOH HOH . E 4 HOH B 26 2026 2026 HOH HOH . E 4 HOH B 27 2027 2027 HOH HOH . E 4 HOH B 28 2028 2028 HOH HOH . E 4 HOH B 29 2029 2029 HOH HOH . E 4 HOH B 30 2030 2030 HOH HOH . E 4 HOH B 31 2031 2031 HOH HOH . E 4 HOH B 32 2032 2032 HOH HOH . E 4 HOH B 33 2033 2033 HOH HOH . E 4 HOH B 34 2034 2034 HOH HOH . E 4 HOH B 35 2035 2035 HOH HOH . E 4 HOH B 36 2036 2036 HOH HOH . E 4 HOH B 37 2037 2037 HOH HOH . E 4 HOH B 38 2038 2038 HOH HOH . E 4 HOH B 39 2039 2039 HOH HOH . E 4 HOH B 40 2040 2040 HOH HOH . E 4 HOH B 41 2041 2041 HOH HOH . E 4 HOH B 42 2042 2042 HOH HOH . E 4 HOH B 43 2043 2043 HOH HOH . E 4 HOH B 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBD BI1 . . . C 3 -37.521 4.497 -6.106 1 49.65 ? CBD BI1 1307 B 1 HETATM 2 N NBC BI1 . . . C 3 -38.433 4.006 -5.094 1 50.82 ? NBC BI1 1307 B 1 HETATM 3 C CBE BI1 . . . C 3 -39.556 3.14 -5.494 1 51.1 ? CBE BI1 1307 B 1 HETATM 4 C CBB BI1 . . . C 3 -38.17 4.441 -3.708 1 49.76 ? CBB BI1 1307 B 1 HETATM 5 C CBA BI1 . . . C 3 -39.099 3.773 -2.676 1 49.36 ? CBA BI1 1307 B 1 HETATM 6 C CAY BI1 . . . C 3 -38.402 3.777 -1.318 1 47.35 ? CAY BI1 1307 B 1 HETATM 7 N NAH BI1 . . . C 3 -39.169 3.16 -0.222 1 47.96 ? NAH BI1 1307 B 1 HETATM 8 C CAW BI1 . . . C 3 -40.511 2.898 -0.148 1 46.69 ? CAW BI1 1307 B 1 HETATM 9 C CAE BI1 . . . C 3 -38.573 2.819 0.941 1 47.4 ? CAE BI1 1307 B 1 HETATM 10 C CAF BI1 . . . C 3 -37.246 2.92 1.352 1 46.84 ? CAF BI1 1307 B 1 HETATM 11 C CAA BI1 . . . C 3 -36.849 2.485 2.613 1 46.26 ? CAA BI1 1307 B 1 HETATM 12 C CAB BI1 . . . C 3 -37.799 1.961 3.475 1 47.22 ? CAB BI1 1307 B 1 HETATM 13 C CAC BI1 . . . C 3 -39.151 1.87 3.078 1 47.34 ? CAC BI1 1307 B 1 HETATM 14 C CAD BI1 . . . C 3 -39.542 2.309 1.814 1 47.14 ? CAD BI1 1307 B 1 HETATM 15 C CAG BI1 . . . C 3 -40.749 2.331 1.1 1 45.56 ? CAG BI1 1307 B 1 HETATM 16 C CAI BI1 . . . C 3 -42.121 1.937 1.599 1 44.72 ? CAI BI1 1307 B 1 HETATM 17 C CAT BI1 . . . C 3 -42.591 1.983 3.008 1 42.93 ? CAT BI1 1307 B 1 HETATM 18 O OAZ BI1 . . . C 3 -41.832 2.297 3.996 1 41.82 ? OAZ BI1 1307 B 1 HETATM 19 N NAU BI1 . . . C 3 -43.911 1.641 3.177 1 41.25 ? NAU BI1 1307 B 1 HETATM 20 C CAV BI1 . . . C 3 -44.386 1.38 1.932 1 41.79 ? CAV BI1 1307 B 1 HETATM 21 O OAX BI1 . . . C 3 -45.616 1.038 1.712 1 43.23 ? OAX BI1 1307 B 1 HETATM 22 C CAJ BI1 . . . C 3 -43.339 1.508 0.9 1 41.06 ? CAJ BI1 1307 B 1 HETATM 23 C CAK BI1 . . . C 3 -43.516 1.401 -0.554 1 42.28 ? CAK BI1 1307 B 1 HETATM 24 C CAM BI1 . . . C 3 -42.476 1.022 -1.404 1 43.03 ? CAM BI1 1307 B 1 HETATM 25 C CAP BI1 . . . C 3 -41.129 0.588 -1.192 1 40.17 ? CAP BI1 1307 B 1 HETATM 26 C CAQ BI1 . . . C 3 -40.337 0.247 -2.284 1 40.87 ? CAQ BI1 1307 B 1 HETATM 27 C CAR BI1 . . . C 3 -40.907 0.338 -3.567 1 41.97 ? CAR BI1 1307 B 1 HETATM 28 C CAS BI1 . . . C 3 -42.247 0.786 -3.766 1 41.64 ? CAS BI1 1307 B 1 HETATM 29 C CAN BI1 . . . C 3 -43.062 1.15 -2.671 1 41.89 ? CAN BI1 1307 B 1 HETATM 30 N NAO BI1 . . . C 3 -44.365 1.602 -2.516 1 41.75 ? NAO BI1 1307 B 1 HETATM 31 C CAL BI1 . . . C 3 -44.681 1.778 -1.205 1 40.82 ? CAL BI1 1307 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 31 #