data_2BIS
#
_model_server_result.job_id            Sz_4uiY6muWWCpNQBOsR2g 
_model_server_result.datetime_utc      '2025-02-26 07:39:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bis 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":603}' 
#
_entry.id    2BIS 
#
_exptl.entry_id    2BIS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.161 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          131.19 
_cell.angle_gamma         90 
_cell.entry_id            2BIS 
_cell.length_a            202.985 
_cell.length_b            73.973 
_cell.length_c            148.221 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BIS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PQS monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K 1 1 
B,L,M,N,O,P,Q 2 1 
C,R,S,T,U,V,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             S 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 224 A CYS 221 1_555 A SG CYS 353 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 224 B CYS 221 1_555 B SG CYS 353 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf3 C SG CYS 224 C CYS 221 1_555 C SG CYS 353 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
covale ? covale1 A OE1 GLU 342 A GLU 339 1_555 I O3 GOL . A GOL 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? 
#
_chem_comp.formula           'C9 H14 N2 O12 P2' 
_chem_comp.formula_weight    404.161 
_chem_comp.id                UDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2BIS 
_atom_sites.fract_transf_matrix[1][1]    0.004926 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004311 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GLC A 1 601 601 GLC GLC . 
E 3 DIO A 1 604 604 DIO DIO . 
F 3 DIO A 1 605 605 DIO DIO . 
G 3 DIO A 1 606 606 DIO DIO . 
H 3 DIO A 1 607 607 DIO DIO . 
I 4 GOL A 1 614 614 GOL GOL . 
J 4 GOL A 1 615 615 GOL GOL . 
K 4 GOL A 1 616 616 GOL GOL . 
L 3 DIO B 1 608 608 DIO DIO . 
M 3 DIO B 1 609 609 DIO DIO . 
N 3 DIO B 1 610 610 DIO DIO . 
O 4 GOL B 1 617 617 GOL GOL . 
P 4 GOL B 1 618 618 GOL GOL . 
Q 4 GOL B 1 619 619 GOL GOL . 
R 2 GLC C 1 602 602 GLC GLC . 
S 5 UDP C 1 603 603 UDP UDP . 
T 3 DIO C 1 611 611 DIO DIO . 
U 3 DIO C 1 612 612 DIO DIO . 
V 3 DIO C 1 613 613 DIO DIO . 
W 4 GOL C 1 620 620 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UDP . . . S 5 60.39 -39.743 9.871 1 80.02 ? N1 UDP 603 C 1 
HETATM 2 C C2 UDP . . . S 5 61.328 -40.261 10.78 1 80.34 ? C2 UDP 603 C 1 
HETATM 3 N N3 UDP . . . S 5 61.922 -39.494 11.68 1 80.12 ? N3 UDP 603 C 1 
HETATM 4 C C4 UDP . . . S 5 61.635 -38.203 11.723 1 80.37 ? C4 UDP 603 C 1 
HETATM 5 C C5 UDP . . . S 5 60.719 -37.644 10.847 1 80.46 ? C5 UDP 603 C 1 
HETATM 6 C C6 UDP . . . S 5 60.094 -38.446 9.911 1 80.4 ? C6 UDP 603 C 1 
HETATM 7 O O2 UDP . . . S 5 61.617 -41.462 10.751 1 81.87 ? O2 UDP 603 C 1 
HETATM 8 O O4 UDP . . . S 5 62.199 -37.493 12.563 1 81.48 ? O4 UDP 603 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#