data_2BIY
#
_model_server_result.job_id            auecWUDTNlKhYA17gQK9eg 
_model_server_result.datetime_utc      '2024-10-18 01:25:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2biy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1373}' 
#
_entry.id    2BIY 
#
_exptl.entry_id    2BIY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BIY 
_cell.length_a            121.827 
_cell.length_b            121.827 
_cell.length_c            47.75 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     2BIY 
_atom_sites.fract_transf_matrix[1][1]    0.008208 
_atom_sites.fract_transf_matrix[1][2]    0.004739 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1359 1359 GOL GOL . 
C 2 GOL A 1 1360 1360 GOL GOL . 
D 2 GOL A 1 1361 1361 GOL GOL . 
E 2 GOL A 1 1362 1362 GOL GOL . 
F 2 GOL A 1 1363 1363 GOL GOL . 
G 2 GOL A 1 1364 1364 GOL GOL . 
H 2 GOL A 1 1365 1365 GOL GOL . 
I 3 SO4 A 1 1366 1366 SO4 SO4 . 
J 3 SO4 A 1 1367 1367 SO4 SO4 . 
K 3 SO4 A 1 1368 1368 SO4 SO4 . 
L 3 SO4 A 1 1369 1369 SO4 SO4 . 
M 3 SO4 A 1 1370 1370 SO4 SO4 . 
N 3 SO4 A 1 1371 1371 SO4 SO4 . 
O 3 SO4 A 1 1372 1372 SO4 SO4 . 
P 4 ATP A 1 1373 1373 ATP ATP . 
Q 5 HOH A 1 2001 2001 HOH HOH . 
Q 5 HOH A 2 2002 2002 HOH HOH . 
Q 5 HOH A 3 2003 2003 HOH HOH . 
Q 5 HOH A 4 2004 2004 HOH HOH . 
Q 5 HOH A 5 2005 2005 HOH HOH . 
Q 5 HOH A 6 2006 2006 HOH HOH . 
Q 5 HOH A 7 2007 2007 HOH HOH . 
Q 5 HOH A 8 2008 2008 HOH HOH . 
Q 5 HOH A 9 2009 2009 HOH HOH . 
Q 5 HOH A 10 2010 2010 HOH HOH . 
Q 5 HOH A 11 2011 2011 HOH HOH . 
Q 5 HOH A 12 2012 2012 HOH HOH . 
Q 5 HOH A 13 2013 2013 HOH HOH . 
Q 5 HOH A 14 2014 2014 HOH HOH . 
Q 5 HOH A 15 2015 2015 HOH HOH . 
Q 5 HOH A 16 2016 2016 HOH HOH . 
Q 5 HOH A 17 2017 2017 HOH HOH . 
Q 5 HOH A 18 2018 2018 HOH HOH . 
Q 5 HOH A 19 2019 2019 HOH HOH . 
Q 5 HOH A 20 2020 2020 HOH HOH . 
Q 5 HOH A 21 2021 2021 HOH HOH . 
Q 5 HOH A 22 2022 2022 HOH HOH . 
Q 5 HOH A 23 2023 2023 HOH HOH . 
Q 5 HOH A 24 2024 2024 HOH HOH . 
Q 5 HOH A 25 2025 2025 HOH HOH . 
Q 5 HOH A 26 2026 2026 HOH HOH . 
Q 5 HOH A 27 2027 2027 HOH HOH . 
Q 5 HOH A 28 2028 2028 HOH HOH . 
Q 5 HOH A 29 2029 2029 HOH HOH . 
Q 5 HOH A 30 2030 2030 HOH HOH . 
Q 5 HOH A 31 2031 2031 HOH HOH . 
Q 5 HOH A 32 2032 2032 HOH HOH . 
Q 5 HOH A 33 2033 2033 HOH HOH . 
Q 5 HOH A 34 2034 2034 HOH HOH . 
Q 5 HOH A 35 2035 2035 HOH HOH . 
Q 5 HOH A 36 2036 2036 HOH HOH . 
Q 5 HOH A 37 2037 2037 HOH HOH . 
Q 5 HOH A 38 2038 2038 HOH HOH . 
Q 5 HOH A 39 2039 2039 HOH HOH . 
Q 5 HOH A 40 2040 2040 HOH HOH . 
Q 5 HOH A 41 2041 2041 HOH HOH . 
Q 5 HOH A 42 2042 2042 HOH HOH . 
Q 5 HOH A 43 2043 2043 HOH HOH . 
Q 5 HOH A 44 2044 2044 HOH HOH . 
Q 5 HOH A 45 2045 2045 HOH HOH . 
Q 5 HOH A 46 2046 2046 HOH HOH . 
Q 5 HOH A 47 2047 2047 HOH HOH . 
Q 5 HOH A 48 2048 2048 HOH HOH . 
Q 5 HOH A 49 2049 2049 HOH HOH . 
Q 5 HOH A 50 2050 2050 HOH HOH . 
Q 5 HOH A 51 2051 2051 HOH HOH . 
Q 5 HOH A 52 2052 2052 HOH HOH . 
Q 5 HOH A 53 2053 2053 HOH HOH . 
Q 5 HOH A 54 2054 2054 HOH HOH . 
Q 5 HOH A 55 2055 2055 HOH HOH . 
Q 5 HOH A 56 2056 2056 HOH HOH . 
Q 5 HOH A 57 2057 2057 HOH HOH . 
Q 5 HOH A 58 2058 2058 HOH HOH . 
Q 5 HOH A 59 2059 2059 HOH HOH . 
Q 5 HOH A 60 2060 2060 HOH HOH . 
Q 5 HOH A 61 2061 2061 HOH HOH . 
Q 5 HOH A 62 2062 2062 HOH HOH . 
Q 5 HOH A 63 2063 2063 HOH HOH . 
Q 5 HOH A 64 2064 2064 HOH HOH . 
Q 5 HOH A 65 2065 2065 HOH HOH . 
Q 5 HOH A 66 2066 2066 HOH HOH . 
Q 5 HOH A 67 2067 2067 HOH HOH . 
Q 5 HOH A 68 2068 2068 HOH HOH . 
Q 5 HOH A 69 2069 2069 HOH HOH . 
Q 5 HOH A 70 2070 2070 HOH HOH . 
Q 5 HOH A 71 2071 2071 HOH HOH . 
Q 5 HOH A 72 2072 2072 HOH HOH . 
Q 5 HOH A 73 2073 2073 HOH HOH . 
Q 5 HOH A 74 2074 2074 HOH HOH . 
Q 5 HOH A 75 2075 2075 HOH HOH . 
Q 5 HOH A 76 2076 2076 HOH HOH . 
Q 5 HOH A 77 2077 2077 HOH HOH . 
Q 5 HOH A 78 2078 2078 HOH HOH . 
Q 5 HOH A 79 2079 2079 HOH HOH . 
Q 5 HOH A 80 2080 2080 HOH HOH . 
Q 5 HOH A 81 2081 2081 HOH HOH . 
Q 5 HOH A 82 2082 2082 HOH HOH . 
Q 5 HOH A 83 2083 2083 HOH HOH . 
Q 5 HOH A 84 2084 2084 HOH HOH . 
Q 5 HOH A 85 2085 2085 HOH HOH . 
Q 5 HOH A 86 2086 2086 HOH HOH . 
Q 5 HOH A 87 2087 2087 HOH HOH . 
Q 5 HOH A 88 2088 2088 HOH HOH . 
Q 5 HOH A 89 2089 2089 HOH HOH . 
Q 5 HOH A 90 2090 2090 HOH HOH . 
Q 5 HOH A 91 2091 2091 HOH HOH . 
Q 5 HOH A 92 2092 2092 HOH HOH . 
Q 5 HOH A 93 2093 2093 HOH HOH . 
Q 5 HOH A 94 2094 2094 HOH HOH . 
Q 5 HOH A 95 2095 2095 HOH HOH . 
Q 5 HOH A 96 2096 2096 HOH HOH . 
Q 5 HOH A 97 2097 2097 HOH HOH . 
Q 5 HOH A 98 2098 2098 HOH HOH . 
Q 5 HOH A 99 2099 2099 HOH HOH . 
Q 5 HOH A 100 2100 2100 HOH HOH . 
Q 5 HOH A 101 2101 2101 HOH HOH . 
Q 5 HOH A 102 2102 2102 HOH HOH . 
Q 5 HOH A 103 2103 2103 HOH HOH . 
Q 5 HOH A 104 2104 2104 HOH HOH . 
Q 5 HOH A 105 2105 2105 HOH HOH . 
Q 5 HOH A 106 2106 2106 HOH HOH . 
Q 5 HOH A 107 2107 2107 HOH HOH . 
Q 5 HOH A 108 2108 2108 HOH HOH . 
Q 5 HOH A 109 2109 2109 HOH HOH . 
Q 5 HOH A 110 2110 2110 HOH HOH . 
Q 5 HOH A 111 2111 2111 HOH HOH . 
Q 5 HOH A 112 2112 2112 HOH HOH . 
Q 5 HOH A 113 2113 2113 HOH HOH . 
Q 5 HOH A 114 2114 2114 HOH HOH . 
Q 5 HOH A 115 2115 2115 HOH HOH . 
Q 5 HOH A 116 2116 2116 HOH HOH . 
Q 5 HOH A 117 2117 2117 HOH HOH . 
Q 5 HOH A 118 2118 2118 HOH HOH . 
Q 5 HOH A 119 2119 2119 HOH HOH . 
Q 5 HOH A 120 2120 2120 HOH HOH . 
Q 5 HOH A 121 2121 2121 HOH HOH . 
Q 5 HOH A 122 2122 2122 HOH HOH . 
Q 5 HOH A 123 2123 2123 HOH HOH . 
Q 5 HOH A 124 2124 2124 HOH HOH . 
Q 5 HOH A 125 2125 2125 HOH HOH . 
Q 5 HOH A 126 2126 2126 HOH HOH . 
Q 5 HOH A 127 2127 2127 HOH HOH . 
Q 5 HOH A 128 2128 2128 HOH HOH . 
Q 5 HOH A 129 2129 2129 HOH HOH . 
Q 5 HOH A 130 2130 2130 HOH HOH . 
Q 5 HOH A 131 2131 2131 HOH HOH . 
Q 5 HOH A 132 2132 2132 HOH HOH . 
Q 5 HOH A 133 2133 2133 HOH HOH . 
Q 5 HOH A 134 2134 2134 HOH HOH . 
Q 5 HOH A 135 2135 2135 HOH HOH . 
Q 5 HOH A 136 2136 2136 HOH HOH . 
Q 5 HOH A 137 2137 2137 HOH HOH . 
Q 5 HOH A 138 2138 2138 HOH HOH . 
Q 5 HOH A 139 2139 2139 HOH HOH . 
Q 5 HOH A 140 2140 2140 HOH HOH . 
Q 5 HOH A 141 2141 2141 HOH HOH . 
Q 5 HOH A 142 2142 2142 HOH HOH . 
Q 5 HOH A 143 2143 2143 HOH HOH . 
Q 5 HOH A 144 2144 2144 HOH HOH . 
Q 5 HOH A 145 2145 2145 HOH HOH . 
Q 5 HOH A 146 2146 2146 HOH HOH . 
Q 5 HOH A 147 2147 2147 HOH HOH . 
Q 5 HOH A 148 2148 2148 HOH HOH . 
Q 5 HOH A 149 2149 2149 HOH HOH . 
Q 5 HOH A 150 2150 2150 HOH HOH . 
Q 5 HOH A 151 2151 2151 HOH HOH . 
Q 5 HOH A 152 2152 2152 HOH HOH . 
Q 5 HOH A 153 2153 2153 HOH HOH . 
Q 5 HOH A 154 2154 2154 HOH HOH . 
Q 5 HOH A 155 2155 2155 HOH HOH . 
Q 5 HOH A 156 2156 2156 HOH HOH . 
Q 5 HOH A 157 2157 2157 HOH HOH . 
Q 5 HOH A 158 2158 2158 HOH HOH . 
Q 5 HOH A 159 2159 2159 HOH HOH . 
Q 5 HOH A 160 2160 2160 HOH HOH . 
Q 5 HOH A 161 2161 2161 HOH HOH . 
Q 5 HOH A 162 2162 2162 HOH HOH . 
Q 5 HOH A 163 2163 2163 HOH HOH . 
Q 5 HOH A 164 2164 2164 HOH HOH . 
Q 5 HOH A 165 2165 2165 HOH HOH . 
Q 5 HOH A 166 2166 2166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 4 16.283 78.786 28.125 1 42.31 ? PG ATP 1373 A 1 
HETATM 2 O O1G ATP . . . P 4 15.944 79.096 26.664 1 41.37 ? O1G ATP 1373 A 1 
HETATM 3 O O2G ATP . . . P 4 15.118 79.108 29.079 1 41.2 ? O2G ATP 1373 A 1 
HETATM 4 O O3G ATP . . . P 4 16.627 77.329 28.186 1 41.3 ? O3G ATP 1373 A 1 
HETATM 5 P PB ATP . . . P 4 19.074 79.324 28.34 1 42.45 ? PB ATP 1373 A 1 
HETATM 6 O O1B ATP . . . P 4 19.857 80.579 28.474 1 41.95 ? O1B ATP 1373 A 1 
HETATM 7 O O2B ATP . . . P 4 19.148 78.665 26.957 1 40.6 ? O2B ATP 1373 A 1 
HETATM 8 O O3B ATP . . . P 4 17.521 79.708 28.603 1 42.92 ? O3B ATP 1373 A 1 
HETATM 9 P PA ATP . . . P 4 20.947 77.518 29.662 1 40.27 ? PA ATP 1373 A 1 
HETATM 10 O O1A ATP . . . P 4 20.948 76.965 31.044 1 40.89 ? O1A ATP 1373 A 1 
HETATM 11 O O2A ATP . . . P 4 21.263 76.491 28.556 1 39.52 ? O2A ATP 1373 A 1 
HETATM 12 O O3A ATP . . . P 4 19.508 78.254 29.49 1 40.58 ? O3A ATP 1373 A 1 
HETATM 13 O O5' ATP . . . P 4 22.081 78.673 29.577 1 35.04 ? O5' ATP 1373 A 1 
HETATM 14 C C5' ATP . . . P 4 22.078 79.693 30.523 1 32.83 ? C5' ATP 1373 A 1 
HETATM 15 C C4' ATP . . . P 4 23.088 80.75 30.106 1 35 ? C4' ATP 1373 A 1 
HETATM 16 O O4' ATP . . . P 4 24.388 80.37 30.54 1 31.42 ? O4' ATP 1373 A 1 
HETATM 17 C C3' ATP . . . P 4 23.21 81.042 28.609 1 34.74 ? C3' ATP 1373 A 1 
HETATM 18 O O3' ATP . . . P 4 22.155 81.901 28.156 1 37.03 ? O3' ATP 1373 A 1 
HETATM 19 C C2' ATP . . . P 4 24.599 81.658 28.577 1 34.46 ? C2' ATP 1373 A 1 
HETATM 20 O O2' ATP . . . P 4 24.606 83.021 28.974 1 36.17 ? O2' ATP 1373 A 1 
HETATM 21 C C1' ATP . . . P 4 25.353 80.873 29.653 1 31.99 ? C1' ATP 1373 A 1 
HETATM 22 N N9 ATP . . . P 4 26.086 79.713 29.112 1 27.23 ? N9 ATP 1373 A 1 
HETATM 23 C C8 ATP . . . P 4 25.539 78.557 28.626 1 27.01 ? C8 ATP 1373 A 1 
HETATM 24 N N7 ATP . . . P 4 26.552 77.696 28.283 1 25.67 ? N7 ATP 1373 A 1 
HETATM 25 C C5 ATP . . . P 4 27.721 78.327 28.561 1 23.51 ? C5 ATP 1373 A 1 
HETATM 26 C C6 ATP . . . P 4 29.024 77.918 28.382 1 21.69 ? C6 ATP 1373 A 1 
HETATM 27 N N6 ATP . . . P 4 29.225 76.745 27.763 1 19.75 ? N6 ATP 1373 A 1 
HETATM 28 N N1 ATP . . . P 4 30.045 78.765 28.759 1 20.78 ? N1 ATP 1373 A 1 
HETATM 29 C C2 ATP . . . P 4 29.771 80.013 29.305 1 24.49 ? C2 ATP 1373 A 1 
HETATM 30 N N3 ATP . . . P 4 28.455 80.409 29.479 1 23.62 ? N3 ATP 1373 A 1 
HETATM 31 C C4 ATP . . . P 4 27.451 79.575 29.107 1 26.51 ? C4 ATP 1373 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#