data_2BJ8
#
_model_server_result.job_id            Gd0O9_NQow2VKBQs1RNu1A 
_model_server_result.datetime_utc      '2024-10-18 16:20:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bj8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1138}' 
#
_entry.id    2BJ8 
#
_exptl.entry_id    2BJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BJ8 
_cell.length_a            110.208 
_cell.length_b            110.208 
_cell.length_c            78.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -26.2 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 64 A HIS 64 6_554 H NI NI . B NI 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc2 A OD2 ASP 65 A ASP 65 6_554 H NI NI . B NI 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc3 A OD1 ASP 65 A ASP 65 6_554 H NI NI . B NI 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc4 A OD2 ASP 75 A ASP 75 6_554 G NI NI . B NI 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 A NE2 HIS 78 A HIS 78 6_554 F NI NI . B NI 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc6 A NE2 HIS 89 A HIS 89 1_555 C NI NI . A NI 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc7 A ND1 HIS 91 A HIS 91 1_555 C NI NI . A NI 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc8 A SG CYS 97 A CYS 97 1_555 C NI NI . A NI 1137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc9 C NI NI . A NI 1137 1_555 B NE2 HIS 78 B HIS 78 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc10 M O HOH . A HOH 2036 6_554 H NI NI . B NI 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc11 B OD2 ASP 36 B ASP 36 1_555 I NI NI . B NI 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc12 B NE2 HIS 64 B HIS 64 1_555 G NI NI . B NI 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc13 B OD2 ASP 65 B ASP 65 1_555 G NI NI . B NI 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc14 B OD1 ASP 65 B ASP 65 1_555 G NI NI . B NI 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc15 B OD2 ASP 75 B ASP 75 1_555 H NI NI . B NI 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc16 B NE2 HIS 89 B HIS 89 1_555 F NI NI . B NI 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc17 B ND1 HIS 91 B HIS 91 1_555 F NI NI . B NI 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc18 B SG CYS 97 B CYS 97 1_555 F NI NI . B NI 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 279 n n 
O1 HO1 PG4 sing 280 n n 
C1 C2 PG4 sing 281 n n 
C1 H11 PG4 sing 282 n n 
C1 H12 PG4 sing 283 n n 
C2 O2 PG4 sing 284 n n 
C2 H21 PG4 sing 285 n n 
C2 H22 PG4 sing 286 n n 
O2 C3 PG4 sing 287 n n 
C3 C4 PG4 sing 288 n n 
C3 H31 PG4 sing 289 n n 
C3 H32 PG4 sing 290 n n 
C4 O3 PG4 sing 291 n n 
C4 H41 PG4 sing 292 n n 
C4 H42 PG4 sing 293 n n 
O3 C5 PG4 sing 294 n n 
C5 C6 PG4 sing 295 n n 
C5 H51 PG4 sing 296 n n 
C5 H52 PG4 sing 297 n n 
C6 O4 PG4 sing 298 n n 
C6 H61 PG4 sing 299 n n 
C6 H62 PG4 sing 300 n n 
O4 C7 PG4 sing 301 n n 
C7 C8 PG4 sing 302 n n 
C7 H71 PG4 sing 303 n n 
C7 H72 PG4 sing 304 n n 
C8 O5 PG4 sing 305 n n 
C8 H81 PG4 sing 306 n n 
C8 H82 PG4 sing 307 n n 
O5 HO5 PG4 sing 308 n n 
#
_atom_sites.entry_id                     2BJ8 
_atom_sites.fract_transf_matrix[1][1]    0.009074 
_atom_sites.fract_transf_matrix[1][2]    0.005239 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 1137 1137 NI NI . 
D 3 PG4 A 1 1138 1138 PG4 PG4 . 
E 4 EPE A 1 1139 1139 EPE EPE . 
F 2 NI B 1 1139 1139 NI NI . 
G 2 NI B 1 1140 1140 NI NI . 
H 2 NI B 1 1141 1141 NI NI . 
I 2 NI B 1 1142 1142 NI NI . 
J 5 CL B 1 1143 1143 CL CL . 
K 6 EDO B 1 1144 1144 EDO EDO . 
L 2 NI B 1 1145 1145 NI NI . 
M 7 HOH A 1 2001 2001 HOH HOH . 
M 7 HOH A 2 2002 2002 HOH HOH . 
M 7 HOH A 3 2003 2003 HOH HOH . 
M 7 HOH A 4 2004 2004 HOH HOH . 
M 7 HOH A 5 2005 2005 HOH HOH . 
M 7 HOH A 6 2006 2006 HOH HOH . 
M 7 HOH A 7 2007 2007 HOH HOH . 
M 7 HOH A 8 2008 2008 HOH HOH . 
M 7 HOH A 9 2009 2009 HOH HOH . 
M 7 HOH A 10 2010 2010 HOH HOH . 
M 7 HOH A 11 2011 2011 HOH HOH . 
M 7 HOH A 12 2012 2012 HOH HOH . 
M 7 HOH A 13 2013 2013 HOH HOH . 
M 7 HOH A 14 2014 2014 HOH HOH . 
M 7 HOH A 15 2015 2015 HOH HOH . 
M 7 HOH A 16 2016 2016 HOH HOH . 
M 7 HOH A 17 2017 2017 HOH HOH . 
M 7 HOH A 18 2018 2018 HOH HOH . 
M 7 HOH A 19 2019 2019 HOH HOH . 
M 7 HOH A 20 2020 2020 HOH HOH . 
M 7 HOH A 21 2021 2021 HOH HOH . 
M 7 HOH A 22 2022 2022 HOH HOH . 
M 7 HOH A 23 2023 2023 HOH HOH . 
M 7 HOH A 24 2024 2024 HOH HOH . 
M 7 HOH A 25 2025 2025 HOH HOH . 
M 7 HOH A 26 2026 2026 HOH HOH . 
M 7 HOH A 27 2027 2027 HOH HOH . 
M 7 HOH A 28 2028 2028 HOH HOH . 
M 7 HOH A 29 2029 2029 HOH HOH . 
M 7 HOH A 30 2030 2030 HOH HOH . 
M 7 HOH A 31 2031 2031 HOH HOH . 
M 7 HOH A 32 2032 2032 HOH HOH . 
M 7 HOH A 33 2033 2033 HOH HOH . 
M 7 HOH A 34 2034 2034 HOH HOH . 
M 7 HOH A 35 2035 2035 HOH HOH . 
M 7 HOH A 36 2036 2036 HOH HOH . 
M 7 HOH A 37 2037 2037 HOH HOH . 
M 7 HOH A 38 2038 2038 HOH HOH . 
M 7 HOH A 39 2039 2039 HOH HOH . 
M 7 HOH A 40 2040 2040 HOH HOH . 
M 7 HOH A 41 2041 2041 HOH HOH . 
M 7 HOH A 42 2042 2042 HOH HOH . 
M 7 HOH A 43 2043 2043 HOH HOH . 
M 7 HOH A 44 2044 2044 HOH HOH . 
M 7 HOH A 45 2045 2045 HOH HOH . 
M 7 HOH A 46 2046 2046 HOH HOH . 
M 7 HOH A 47 2047 2047 HOH HOH . 
M 7 HOH A 48 2048 2048 HOH HOH . 
N 7 HOH B 1 2001 2001 HOH HOH . 
N 7 HOH B 2 2002 2002 HOH HOH . 
N 7 HOH B 3 2003 2003 HOH HOH . 
N 7 HOH B 4 2004 2004 HOH HOH . 
N 7 HOH B 5 2005 2005 HOH HOH . 
N 7 HOH B 6 2006 2006 HOH HOH . 
N 7 HOH B 7 2007 2007 HOH HOH . 
N 7 HOH B 8 2008 2008 HOH HOH . 
N 7 HOH B 9 2009 2009 HOH HOH . 
N 7 HOH B 10 2010 2010 HOH HOH . 
N 7 HOH B 11 2011 2011 HOH HOH . 
N 7 HOH B 12 2012 2012 HOH HOH . 
N 7 HOH B 13 2013 2013 HOH HOH . 
N 7 HOH B 14 2014 2014 HOH HOH . 
N 7 HOH B 15 2015 2015 HOH HOH . 
N 7 HOH B 16 2016 2016 HOH HOH . 
N 7 HOH B 17 2017 2017 HOH HOH . 
N 7 HOH B 18 2018 2018 HOH HOH . 
N 7 HOH B 19 2019 2019 HOH HOH . 
N 7 HOH B 20 2020 2020 HOH HOH . 
N 7 HOH B 21 2021 2021 HOH HOH . 
N 7 HOH B 22 2022 2022 HOH HOH . 
N 7 HOH B 23 2023 2023 HOH HOH . 
N 7 HOH B 24 2024 2024 HOH HOH . 
N 7 HOH B 25 2025 2025 HOH HOH . 
N 7 HOH B 26 2026 2026 HOH HOH . 
N 7 HOH B 27 2027 2027 HOH HOH . 
N 7 HOH B 28 2028 2028 HOH HOH . 
N 7 HOH B 29 2029 2029 HOH HOH . 
N 7 HOH B 30 2030 2030 HOH HOH . 
N 7 HOH B 31 2031 2031 HOH HOH . 
N 7 HOH B 32 2032 2032 HOH HOH . 
N 7 HOH B 33 2033 2033 HOH HOH . 
N 7 HOH B 34 2034 2034 HOH HOH . 
N 7 HOH B 35 2035 2035 HOH HOH . 
N 7 HOH B 36 2036 2036 HOH HOH . 
N 7 HOH B 37 2037 2037 HOH HOH . 
N 7 HOH B 38 2038 2038 HOH HOH . 
N 7 HOH B 39 2039 2039 HOH HOH . 
N 7 HOH B 40 2040 2040 HOH HOH . 
N 7 HOH B 41 2041 2041 HOH HOH . 
N 7 HOH B 42 2042 2042 HOH HOH . 
N 7 HOH B 43 2043 2043 HOH HOH . 
N 7 HOH B 44 2044 2044 HOH HOH . 
N 7 HOH B 45 2045 2045 HOH HOH . 
N 7 HOH B 46 2046 2046 HOH HOH . 
N 7 HOH B 47 2047 2047 HOH HOH . 
N 7 HOH B 48 2048 2048 HOH HOH . 
N 7 HOH B 49 2049 2049 HOH HOH . 
N 7 HOH B 50 2050 2050 HOH HOH . 
N 7 HOH B 51 2051 2051 HOH HOH . 
N 7 HOH B 52 2052 2052 HOH HOH . 
N 7 HOH B 53 2053 2053 HOH HOH . 
N 7 HOH B 54 2054 2054 HOH HOH . 
N 7 HOH B 55 2055 2055 HOH HOH . 
N 7 HOH B 56 2056 2056 HOH HOH . 
N 7 HOH B 57 2057 2057 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . D 3 -0.698 79.259 -14.162 1 95.42 ? O1 PG4 1138 A 1 
HETATM 2 C C1 PG4 . . . D 3 0.591 79.271 -14.829 1 93.25 ? C1 PG4 1138 A 1 
HETATM 3 C C2 PG4 . . . D 3 1.717 78.939 -13.818 1 90.96 ? C2 PG4 1138 A 1 
HETATM 4 O O2 PG4 . . . D 3 1.729 77.517 -13.529 1 79.28 ? O2 PG4 1138 A 1 
HETATM 5 C C3 PG4 . . . D 3 2.972 76.924 -13.99 1 85.67 ? C3 PG4 1138 A 1 
HETATM 6 C C4 PG4 . . . D 3 2.846 75.388 -14.036 1 81 ? C4 PG4 1138 A 1 
HETATM 7 O O3 PG4 . . . D 3 1.959 74.989 -15.115 1 82.8 ? O3 PG4 1138 A 1 
HETATM 8 C C5 PG4 . . . D 3 2.518 73.854 -15.823 1 73.33 ? C5 PG4 1138 A 1 
HETATM 9 C C6 PG4 . . . D 3 1.516 73.336 -16.875 1 69.82 ? C6 PG4 1138 A 1 
HETATM 10 O O4 PG4 . . . D 3 1.316 74.329 -17.914 1 76.82 ? O4 PG4 1138 A 1 
HETATM 11 C C7 PG4 . . . D 3 2.098 73.995 -19.091 1 65.33 ? C7 PG4 1138 A 1 
HETATM 12 C C8 PG4 . . . D 3 2.364 75.262 -19.926 1 71.74 ? C8 PG4 1138 A 1 
HETATM 13 O O5 PG4 . . . D 3 3.76 75.306 -20.335 1 68.98 ? O5 PG4 1138 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#