data_2BKJ # _model_server_result.job_id PEFqK9lfKbQg5GjXHffIAg _model_server_result.datetime_utc '2025-06-28 10:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":241}' # _entry.id 2BKJ # _exptl.entry_id 2BKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.7 _cell.angle_gamma 90 _cell.entry_id 2BKJ _cell.length_a 51.2 _cell.length_b 85.9 _cell.length_c 59.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2BKJ _atom_sites.fract_transf_matrix[1][1] 0.019531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 241 241 FMN FMN . D 2 FMN B 1 241 241 FMN FMN . E 3 NAD B 1 243 243 NAD NAD . F 4 HOH A 1 302 302 HOH HOH . F 4 HOH A 2 303 303 HOH HOH . F 4 HOH A 3 305 305 HOH HOH . F 4 HOH A 4 306 306 HOH HOH . F 4 HOH A 5 307 307 HOH HOH . F 4 HOH A 6 308 308 HOH HOH . F 4 HOH A 7 310 310 HOH HOH . F 4 HOH A 8 311 311 HOH HOH . F 4 HOH A 9 312 312 HOH HOH . F 4 HOH A 10 313 313 HOH HOH . F 4 HOH A 11 314 314 HOH HOH . F 4 HOH A 12 315 315 HOH HOH . F 4 HOH A 13 316 316 HOH HOH . F 4 HOH A 14 317 317 HOH HOH . F 4 HOH A 15 318 318 HOH HOH . F 4 HOH A 16 323 323 HOH HOH . F 4 HOH A 17 327 327 HOH HOH . F 4 HOH A 18 328 328 HOH HOH . F 4 HOH A 19 335 335 HOH HOH . F 4 HOH A 20 342 342 HOH HOH . F 4 HOH A 21 344 344 HOH HOH . F 4 HOH A 22 345 345 HOH HOH . F 4 HOH A 23 348 348 HOH HOH . F 4 HOH A 24 349 349 HOH HOH . F 4 HOH A 25 350 350 HOH HOH . F 4 HOH A 26 351 351 HOH HOH . F 4 HOH A 27 355 355 HOH HOH . F 4 HOH A 28 357 357 HOH HOH . F 4 HOH A 29 359 359 HOH HOH . F 4 HOH A 30 360 360 HOH HOH . F 4 HOH A 31 365 365 HOH HOH . F 4 HOH A 32 366 366 HOH HOH . F 4 HOH A 33 369 369 HOH HOH . F 4 HOH A 34 371 371 HOH HOH . F 4 HOH A 35 373 373 HOH HOH . F 4 HOH A 36 374 374 HOH HOH . F 4 HOH A 37 375 375 HOH HOH . F 4 HOH A 38 387 387 HOH HOH . F 4 HOH A 39 393 393 HOH HOH . F 4 HOH A 40 395 395 HOH HOH . F 4 HOH A 41 400 400 HOH HOH . F 4 HOH A 42 401 401 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 320 320 HOH HOH . G 4 HOH B 3 321 321 HOH HOH . G 4 HOH B 4 322 322 HOH HOH . G 4 HOH B 5 324 324 HOH HOH . G 4 HOH B 6 325 325 HOH HOH . G 4 HOH B 7 326 326 HOH HOH . G 4 HOH B 8 329 329 HOH HOH . G 4 HOH B 9 330 330 HOH HOH . G 4 HOH B 10 331 331 HOH HOH . G 4 HOH B 11 332 332 HOH HOH . G 4 HOH B 12 333 333 HOH HOH . G 4 HOH B 13 334 334 HOH HOH . G 4 HOH B 14 336 336 HOH HOH . G 4 HOH B 15 337 337 HOH HOH . G 4 HOH B 16 338 338 HOH HOH . G 4 HOH B 17 339 339 HOH HOH . G 4 HOH B 18 340 340 HOH HOH . G 4 HOH B 19 341 341 HOH HOH . G 4 HOH B 20 343 343 HOH HOH . G 4 HOH B 21 346 346 HOH HOH . G 4 HOH B 22 352 352 HOH HOH . G 4 HOH B 23 353 353 HOH HOH . G 4 HOH B 24 354 354 HOH HOH . G 4 HOH B 25 358 358 HOH HOH . G 4 HOH B 26 362 362 HOH HOH . G 4 HOH B 27 363 363 HOH HOH . G 4 HOH B 28 367 367 HOH HOH . G 4 HOH B 29 381 381 HOH HOH . G 4 HOH B 30 384 384 HOH HOH . G 4 HOH B 31 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -7.008 -3.349 9.417 1 8.12 ? N1 FMN 241 A 1 HETATM 2 C C2 FMN . . . C 2 -7.509 -3.77 8.201 1 8.4 ? C2 FMN 241 A 1 HETATM 3 O O2 FMN . . . C 2 -8.528 -4.441 8.103 1 8.36 ? O2 FMN 241 A 1 HETATM 4 N N3 FMN . . . C 2 -6.738 -3.402 7.113 1 7.96 ? N3 FMN 241 A 1 HETATM 5 C C4 FMN . . . C 2 -5.526 -2.719 7.162 1 8.04 ? C4 FMN 241 A 1 HETATM 6 O O4 FMN . . . C 2 -4.943 -2.509 6.096 1 7.52 ? O4 FMN 241 A 1 HETATM 7 C C4A FMN . . . C 2 -5.127 -2.325 8.496 1 7.95 ? C4A FMN 241 A 1 HETATM 8 N N5 FMN . . . C 2 -4.074 -1.439 8.532 1 7.48 ? N5 FMN 241 A 1 HETATM 9 C C5A FMN . . . C 2 -3.737 -0.89 9.739 1 7.28 ? C5A FMN 241 A 1 HETATM 10 C C6 FMN . . . C 2 -2.775 0.086 9.744 1 7.67 ? C6 FMN 241 A 1 HETATM 11 C C7 FMN . . . C 2 -2.469 0.738 10.923 1 7.16 ? C7 FMN 241 A 1 HETATM 12 C C7M FMN . . . C 2 -1.553 1.981 10.886 1 7.26 ? C7M FMN 241 A 1 HETATM 13 C C8 FMN . . . C 2 -3.075 0.338 12.114 1 6.32 ? C8 FMN 241 A 1 HETATM 14 C C8M FMN . . . C 2 -2.728 1.001 13.432 1 5.4 ? C8M FMN 241 A 1 HETATM 15 C C9 FMN . . . C 2 -4.003 -0.662 12.108 1 6.46 ? C9 FMN 241 A 1 HETATM 16 C C9A FMN . . . C 2 -4.376 -1.261 10.918 1 7.25 ? C9A FMN 241 A 1 HETATM 17 N N10 FMN . . . C 2 -5.403 -2.194 10.902 1 7.92 ? N10 FMN 241 A 1 HETATM 18 C C10 FMN . . . C 2 -5.832 -2.652 9.667 1 7.9 ? C10 FMN 241 A 1 HETATM 19 C C1' FMN . . . C 2 -6.265 -2.22 11.938 1 9.09 ? C1' FMN 241 A 1 HETATM 20 C C2' FMN . . . C 2 -6.426 -3.55 12.686 1 9.78 ? C2' FMN 241 A 1 HETATM 21 O O2' FMN . . . C 2 -5.657 -4.665 12.215 1 10.78 ? O2' FMN 241 A 1 HETATM 22 C C3' FMN . . . C 2 -6.588 -3.402 14.195 1 10.37 ? C3' FMN 241 A 1 HETATM 23 O O3' FMN . . . C 2 -6.028 -2.222 14.785 1 10.43 ? O3' FMN 241 A 1 HETATM 24 C C4' FMN . . . C 2 -6.577 -4.658 15.081 1 10.73 ? C4' FMN 241 A 1 HETATM 25 O O4' FMN . . . C 2 -5.718 -5.74 14.81 1 12.06 ? O4' FMN 241 A 1 HETATM 26 C C5' FMN . . . C 2 -6.781 -4.416 16.533 1 9.93 ? C5' FMN 241 A 1 HETATM 27 O O5' FMN . . . C 2 -8.199 -4.453 16.628 1 9.8 ? O5' FMN 241 A 1 HETATM 28 P P FMN . . . C 2 -9.142 -3.213 16.919 1 10.81 ? P FMN 241 A 1 HETATM 29 O O1P FMN . . . C 2 -8.972 -3.062 18.378 1 10.69 ? O1P FMN 241 A 1 HETATM 30 O O2P FMN . . . C 2 -10.46 -3.716 16.474 1 10.8 ? O2P FMN 241 A 1 HETATM 31 O O3P FMN . . . C 2 -8.613 -2.081 16.132 1 10.35 ? O3P FMN 241 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #