data_2BKJ # _model_server_result.job_id G9NP6z63bHGDZk-Oq3ABsQ _model_server_result.datetime_utc '2024-11-05 00:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":243}' # _entry.id 2BKJ # _exptl.entry_id 2BKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.7 _cell.angle_gamma 90 _cell.entry_id 2BKJ _cell.length_a 51.2 _cell.length_b 85.9 _cell.length_c 59.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 291 n n PA O2A NAD sing 292 n n PA O5B NAD sing 293 n n PA O3 NAD sing 294 n n O2A HOA2 NAD sing 295 n n O5B C5B NAD sing 296 n n C5B C4B NAD sing 297 n n C5B H51A NAD sing 298 n n C5B H52A NAD sing 299 n n C4B O4B NAD sing 300 n n C4B C3B NAD sing 301 n n C4B H4B NAD sing 302 n n O4B C1B NAD sing 303 n n C3B O3B NAD sing 304 n n C3B C2B NAD sing 305 n n C3B H3B NAD sing 306 n n O3B HO3A NAD sing 307 n n C2B O2B NAD sing 308 n n C2B C1B NAD sing 309 n n C2B H2B NAD sing 310 n n O2B HO2A NAD sing 311 n n C1B N9A NAD sing 312 n n C1B H1B NAD sing 313 n n N9A C8A NAD sing 314 n y N9A C4A NAD sing 315 n y C8A N7A NAD doub 316 n y C8A H8A NAD sing 317 n n N7A C5A NAD sing 318 n y C5A C6A NAD sing 319 n y C5A C4A NAD doub 320 n y C6A N6A NAD sing 321 n n C6A N1A NAD doub 322 n y N6A H61A NAD sing 323 n n N6A H62A NAD sing 324 n n N1A C2A NAD sing 325 n y C2A N3A NAD doub 326 n y C2A H2A NAD sing 327 n n N3A C4A NAD sing 328 n y O3 PN NAD sing 329 n n PN O1N NAD doub 330 n n PN O2N NAD sing 331 n n PN O5D NAD sing 332 n n O5D C5D NAD sing 333 n n C5D C4D NAD sing 334 n n C5D H51N NAD sing 335 n n C5D H52N NAD sing 336 n n C4D O4D NAD sing 337 n n C4D C3D NAD sing 338 n n C4D H4D NAD sing 339 n n O4D C1D NAD sing 340 n n C3D O3D NAD sing 341 n n C3D C2D NAD sing 342 n n C3D H3D NAD sing 343 n n O3D HO3N NAD sing 344 n n C2D O2D NAD sing 345 n n C2D C1D NAD sing 346 n n C2D H2D NAD sing 347 n n O2D HO2N NAD sing 348 n n C1D N1N NAD sing 349 n n C1D H1D NAD sing 350 n n N1N C2N NAD sing 351 n y N1N C6N NAD doub 352 n y C2N C3N NAD doub 353 n y C2N H2N NAD sing 354 n n C3N C7N NAD sing 355 n n C3N C4N NAD sing 356 n y C7N O7N NAD doub 357 n n C7N N7N NAD sing 358 n n N7N H71N NAD sing 359 n n N7N H72N NAD sing 360 n n C4N C5N NAD doub 361 n y C4N H4N NAD sing 362 n n C5N C6N NAD sing 363 n y C5N H5N NAD sing 364 n n C6N H6N NAD sing 365 n n # _atom_sites.entry_id 2BKJ _atom_sites.fract_transf_matrix[1][1] 0.019531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 241 241 FMN FMN . D 2 FMN B 1 241 241 FMN FMN . E 3 NAD B 1 243 243 NAD NAD . F 4 HOH A 1 302 302 HOH HOH . F 4 HOH A 2 303 303 HOH HOH . F 4 HOH A 3 305 305 HOH HOH . F 4 HOH A 4 306 306 HOH HOH . F 4 HOH A 5 307 307 HOH HOH . F 4 HOH A 6 308 308 HOH HOH . F 4 HOH A 7 310 310 HOH HOH . F 4 HOH A 8 311 311 HOH HOH . F 4 HOH A 9 312 312 HOH HOH . F 4 HOH A 10 313 313 HOH HOH . F 4 HOH A 11 314 314 HOH HOH . F 4 HOH A 12 315 315 HOH HOH . F 4 HOH A 13 316 316 HOH HOH . F 4 HOH A 14 317 317 HOH HOH . F 4 HOH A 15 318 318 HOH HOH . F 4 HOH A 16 323 323 HOH HOH . F 4 HOH A 17 327 327 HOH HOH . F 4 HOH A 18 328 328 HOH HOH . F 4 HOH A 19 335 335 HOH HOH . F 4 HOH A 20 342 342 HOH HOH . F 4 HOH A 21 344 344 HOH HOH . F 4 HOH A 22 345 345 HOH HOH . F 4 HOH A 23 348 348 HOH HOH . F 4 HOH A 24 349 349 HOH HOH . F 4 HOH A 25 350 350 HOH HOH . F 4 HOH A 26 351 351 HOH HOH . F 4 HOH A 27 355 355 HOH HOH . F 4 HOH A 28 357 357 HOH HOH . F 4 HOH A 29 359 359 HOH HOH . F 4 HOH A 30 360 360 HOH HOH . F 4 HOH A 31 365 365 HOH HOH . F 4 HOH A 32 366 366 HOH HOH . F 4 HOH A 33 369 369 HOH HOH . F 4 HOH A 34 371 371 HOH HOH . F 4 HOH A 35 373 373 HOH HOH . F 4 HOH A 36 374 374 HOH HOH . F 4 HOH A 37 375 375 HOH HOH . F 4 HOH A 38 387 387 HOH HOH . F 4 HOH A 39 393 393 HOH HOH . F 4 HOH A 40 395 395 HOH HOH . F 4 HOH A 41 400 400 HOH HOH . F 4 HOH A 42 401 401 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 320 320 HOH HOH . G 4 HOH B 3 321 321 HOH HOH . G 4 HOH B 4 322 322 HOH HOH . G 4 HOH B 5 324 324 HOH HOH . G 4 HOH B 6 325 325 HOH HOH . G 4 HOH B 7 326 326 HOH HOH . G 4 HOH B 8 329 329 HOH HOH . G 4 HOH B 9 330 330 HOH HOH . G 4 HOH B 10 331 331 HOH HOH . G 4 HOH B 11 332 332 HOH HOH . G 4 HOH B 12 333 333 HOH HOH . G 4 HOH B 13 334 334 HOH HOH . G 4 HOH B 14 336 336 HOH HOH . G 4 HOH B 15 337 337 HOH HOH . G 4 HOH B 16 338 338 HOH HOH . G 4 HOH B 17 339 339 HOH HOH . G 4 HOH B 18 340 340 HOH HOH . G 4 HOH B 19 341 341 HOH HOH . G 4 HOH B 20 343 343 HOH HOH . G 4 HOH B 21 346 346 HOH HOH . G 4 HOH B 22 352 352 HOH HOH . G 4 HOH B 23 353 353 HOH HOH . G 4 HOH B 24 354 354 HOH HOH . G 4 HOH B 25 358 358 HOH HOH . G 4 HOH B 26 362 362 HOH HOH . G 4 HOH B 27 363 363 HOH HOH . G 4 HOH B 28 367 367 HOH HOH . G 4 HOH B 29 381 381 HOH HOH . G 4 HOH B 30 384 384 HOH HOH . G 4 HOH B 31 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 12.574 19.534 19.6 1 20.44 ? PA NAD 243 B 1 HETATM 2 O O1A NAD . . . E 3 12.603 18.058 19.512 1 20.4 ? O1A NAD 243 B 1 HETATM 3 O O2A NAD . . . E 3 13.224 20.334 18.539 1 20.58 ? O2A NAD 243 B 1 HETATM 4 O O5B NAD . . . E 3 13.157 19.974 21.071 1 20.9 ? O5B NAD 243 B 1 HETATM 5 C C5B NAD . . . E 3 13.505 21.333 21.394 1 21.5 ? C5B NAD 243 B 1 HETATM 6 C C4B NAD . . . E 3 14.93 21.606 20.934 1 22.23 ? C4B NAD 243 B 1 HETATM 7 O O4B NAD . . . E 3 15.212 23.017 20.862 1 21.93 ? O4B NAD 243 B 1 HETATM 8 C C3B NAD . . . E 3 15.974 21.005 21.852 1 22.47 ? C3B NAD 243 B 1 HETATM 9 O O3B NAD . . . E 3 17.066 20.514 21.069 1 24.38 ? O3B NAD 243 B 1 HETATM 10 C C2B NAD . . . E 3 16.406 22.173 22.721 1 22.21 ? C2B NAD 243 B 1 HETATM 11 O O2B NAD . . . E 3 17.764 22.061 23.149 1 22.26 ? O2B NAD 243 B 1 HETATM 12 C C1B NAD . . . E 3 16.242 23.372 21.808 1 21.84 ? C1B NAD 243 B 1 HETATM 13 N N9A NAD . . . E 3 15.859 24.584 22.577 1 21.14 ? N9A NAD 243 B 1 HETATM 14 C C8A NAD . . . E 3 16.457 25.783 22.527 1 20.51 ? C8A NAD 243 B 1 HETATM 15 N N7A NAD . . . E 3 15.802 26.668 23.287 1 20.22 ? N7A NAD 243 B 1 HETATM 16 C C5A NAD . . . E 3 14.803 25.97 23.807 1 21.16 ? C5A NAD 243 B 1 HETATM 17 C C6A NAD . . . E 3 13.916 26.44 24.755 1 21.46 ? C6A NAD 243 B 1 HETATM 18 N N6A NAD . . . E 3 13.898 27.702 25.18 1 22.17 ? N6A NAD 243 B 1 HETATM 19 N N1A NAD . . . E 3 13.055 25.539 25.27 1 21.71 ? N1A NAD 243 B 1 HETATM 20 C C2A NAD . . . E 3 13.064 24.264 24.874 1 21.73 ? C2A NAD 243 B 1 HETATM 21 N N3A NAD . . . E 3 13.921 23.831 23.945 1 21.27 ? N3A NAD 243 B 1 HETATM 22 C C4A NAD . . . E 3 14.817 24.68 23.402 1 21.19 ? C4A NAD 243 B 1 HETATM 23 O O3 NAD . . . E 3 11.034 19.958 19.63 1 20.41 ? O3 NAD 243 B 1 HETATM 24 P PN NAD . . . E 3 10.151 21.237 19.253 1 20.86 ? PN NAD 243 B 1 HETATM 25 O O1N NAD . . . E 3 8.79 20.758 18.934 1 19.62 ? O1N NAD 243 B 1 HETATM 26 O O2N NAD . . . E 3 10.887 22.093 18.294 1 20.46 ? O2N NAD 243 B 1 HETATM 27 O O5D NAD . . . E 3 10.095 21.961 20.677 1 23.09 ? O5D NAD 243 B 1 HETATM 28 C C5D NAD . . . E 3 10.008 23.376 20.662 1 27.01 ? C5D NAD 243 B 1 HETATM 29 C C4D NAD . . . E 3 9.968 23.986 22.046 1 30.23 ? C4D NAD 243 B 1 HETATM 30 O O4D NAD . . . E 3 11.237 24.611 22.333 1 31.6 ? O4D NAD 243 B 1 HETATM 31 C C3D NAD . . . E 3 8.968 25.113 21.982 1 31.76 ? C3D NAD 243 B 1 HETATM 32 O O3D NAD . . . E 3 8.479 25.521 23.267 1 32.43 ? O3D NAD 243 B 1 HETATM 33 C C2D NAD . . . E 3 9.799 26.175 21.283 1 32.9 ? C2D NAD 243 B 1 HETATM 34 O O2D NAD . . . E 3 9.193 27.443 21.559 1 34.81 ? O2D NAD 243 B 1 HETATM 35 C C1D NAD . . . E 3 11.195 25.986 21.893 1 33.1 ? C1D NAD 243 B 1 HETATM 36 N N1N NAD . . . E 3 12.364 26.29 21.012 1 34.27 ? N1N NAD 243 B 1 HETATM 37 C C2N NAD . . . E 3 13.006 27.535 21.139 1 35.34 ? C2N NAD 243 B 1 HETATM 38 C C3N NAD . . . E 3 14.182 27.832 20.442 1 36.1 ? C3N NAD 243 B 1 HETATM 39 C C7N NAD . . . E 3 14.801 29.238 20.548 1 36.6 ? C7N NAD 243 B 1 HETATM 40 O O7N NAD . . . E 3 15.763 29.568 19.854 1 37.25 ? O7N NAD 243 B 1 HETATM 41 N N7N NAD . . . E 3 14.203 30.071 21.4 1 37 ? N7N NAD 243 B 1 HETATM 42 C C4N NAD . . . E 3 14.739 26.863 19.598 1 35.8 ? C4N NAD 243 B 1 HETATM 43 C C5N NAD . . . E 3 14.121 25.618 19.45 1 35.35 ? C5N NAD 243 B 1 HETATM 44 C C6N NAD . . . E 3 12.943 25.331 20.15 1 35.01 ? C6N NAD 243 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #