data_2BKT # _model_server_result.job_id a6NG1hiDW-IpusQNJZuhFQ _model_server_result.datetime_utc '2025-03-06 01:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":567}' # _entry.id 2BKT # _exptl.entry_id 2BKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.643 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[3-(2-METHOXY-BENZYLOXY)-PROPOXY]-PHENYL}-6-(1,2,3,4-TETRAHYDRO-QUINOLIN-7-YLOXYMETHYL)-PIPERAZIN-2-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BKT _cell.length_a 138.895 _cell.length_b 138.895 _cell.length_c 138.895 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 46 1_555 A SG CYS 58 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 217 A CYS 210 1_555 A SG CYS 221 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 259 A CYS 252 1_555 A SG CYS 296 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 51 B CYS 46 1_555 B SG CYS 58 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 217 B CYS 210 1_555 B SG CYS 221 B CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 B SG CYS 259 B CYS 252 1_555 B SG CYS 296 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C31 H37 N3 O5' _chem_comp.formula_weight 531.643 _chem_comp.id RPF _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[3-(2-METHOXY-BENZYLOXY)-PROPOXY]-PHENYL}-6-(1,2,,3,4-TETRAHYDRO-QUINOLIN-7-YLOXYMETHYL)-PIPERAZIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 RPF sing 277 n n C1 H1C1 RPF sing 278 n n C1 H1C2 RPF sing 279 n n C1 H1C3 RPF sing 280 n n O1 C2 RPF sing 281 n n C2 C3 RPF doub 282 n y C2 C5 RPF sing 283 n y C3 C4 RPF sing 284 n n C3 C8 RPF sing 285 n y C4 O2 RPF sing 286 n n C4 H4C1 RPF sing 287 n n C4 H4C2 RPF sing 288 n n O2 C33 RPF sing 289 n n C5 C6 RPF doub 290 n y C5 H5 RPF sing 291 n n C6 C7 RPF sing 292 n y C6 H6 RPF sing 293 n n C7 C8 RPF doub 294 n y C7 H7 RPF sing 295 n n C8 H8 RPF sing 296 n n C9 C10 RPF doub 297 n y C9 C14 RPF sing 298 n y C9 O6 RPF sing 299 n n C10 C11 RPF sing 300 n y C10 H10 RPF sing 301 n n C11 C12 RPF doub 302 n y C11 N1 RPF sing 303 n n C12 C13 RPF sing 304 n y C12 C36 RPF sing 305 n n C13 C14 RPF doub 306 n y C13 H13 RPF sing 307 n n C14 H14 RPF sing 308 n n C20 C21 RPF sing 309 n n C20 N3 RPF sing 310 n n C20 C24 RPF sing 311 n n C20 H20 RPF sing 312 n n C21 N2 RPF sing 313 n n C21 H211 RPF sing 314 n n C21 H212 RPF sing 315 n n N2 C22 RPF sing 316 n n N2 H2 RPF sing 317 n n C22 C23 RPF sing 318 n n C22 H221 RPF sing 319 n n C22 H222 RPF sing 320 n n C23 N3 RPF sing 321 n n C23 O5 RPF doub 322 n n N3 C26 RPF sing 323 n n C24 O6 RPF sing 324 n n C24 H241 RPF sing 325 n n C24 H242 RPF sing 326 n n C25 C26 RPF doub 327 n y C25 C30 RPF sing 328 n y C25 H25 RPF sing 329 n n C26 C27 RPF sing 330 n y C27 C28 RPF doub 331 n y C27 H27 RPF sing 332 n n C28 C29 RPF sing 333 n y C28 H28 RPF sing 334 n n C29 C30 RPF doub 335 n y C29 O7 RPF sing 336 n n C30 H30 RPF sing 337 n n O7 C31 RPF sing 338 n n C31 C32 RPF sing 339 n n C31 H311 RPF sing 340 n n C31 H312 RPF sing 341 n n C32 C33 RPF sing 342 n n C32 H321 RPF sing 343 n n C32 H322 RPF sing 344 n n C33 H331 RPF sing 345 n n C33 H332 RPF sing 346 n n C34 C35 RPF sing 347 n n C34 C36 RPF sing 348 n n C34 H341 RPF sing 349 n n C34 H342 RPF sing 350 n n C35 N1 RPF sing 351 n n C35 H351 RPF sing 352 n n C35 H352 RPF sing 353 n n N1 H1 RPF sing 354 n n C36 H361 RPF sing 355 n n C36 H362 RPF sing 356 n n # _atom_sites.entry_id 2BKT _atom_sites.fract_transf_matrix[1][1] 0.0072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RPF A 1 567 567 RPF RPF . D 2 RPF B 1 567 567 RPF RPF . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . F 3 HOH B 52 2052 2052 HOH HOH . F 3 HOH B 53 2053 2053 HOH HOH . F 3 HOH B 54 2054 2054 HOH HOH . F 3 HOH B 55 2055 2055 HOH HOH . F 3 HOH B 56 2056 2056 HOH HOH . F 3 HOH B 57 2057 2057 HOH HOH . F 3 HOH B 58 2058 2058 HOH HOH . F 3 HOH B 59 2059 2059 HOH HOH . F 3 HOH B 60 2060 2060 HOH HOH . F 3 HOH B 61 2061 2061 HOH HOH . F 3 HOH B 62 2062 2062 HOH HOH . F 3 HOH B 63 2063 2063 HOH HOH . F 3 HOH B 64 2064 2064 HOH HOH . F 3 HOH B 65 2065 2065 HOH HOH . F 3 HOH B 66 2066 2066 HOH HOH . F 3 HOH B 67 2067 2067 HOH HOH . F 3 HOH B 68 2068 2068 HOH HOH . F 3 HOH B 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RPF . . . C 2 79.752 18.523 76.153 1 57.69 ? C1 RPF 567 A 1 HETATM 2 O O1 RPF . . . C 2 78.887 17.603 75.52 1 54.69 ? O1 RPF 567 A 1 HETATM 3 C C2 RPF . . . C 2 79.362 16.298 75.62 1 50.41 ? C2 RPF 567 A 1 HETATM 4 C C3 RPF . . . C 2 78.879 15.419 76.637 1 48.36 ? C3 RPF 567 A 1 HETATM 5 C C4 RPF . . . C 2 77.847 15.893 77.637 1 45.49 ? C4 RPF 567 A 1 HETATM 6 O O2 RPF . . . C 2 76.812 14.958 77.833 1 44 ? O2 RPF 567 A 1 HETATM 7 C C5 RPF . . . C 2 80.333 15.848 74.691 1 48.99 ? C5 RPF 567 A 1 HETATM 8 C C6 RPF . . . C 2 80.828 14.522 74.768 1 51.32 ? C6 RPF 567 A 1 HETATM 9 C C7 RPF . . . C 2 80.358 13.647 75.763 1 47.26 ? C7 RPF 567 A 1 HETATM 10 C C8 RPF . . . C 2 79.39 14.096 76.692 1 49.7 ? C8 RPF 567 A 1 HETATM 11 C C9 RPF . . . C 2 77.875 22.73 73.635 1 44.02 ? C9 RPF 567 A 1 HETATM 12 C C10 RPF . . . C 2 78.71 23.014 72.556 1 44.86 ? C10 RPF 567 A 1 HETATM 13 C C11 RPF . . . C 2 79.16 22.018 71.691 1 45.27 ? C11 RPF 567 A 1 HETATM 14 C C12 RPF . . . C 2 78.774 20.66 71.9 1 44.53 ? C12 RPF 567 A 1 HETATM 15 C C13 RPF . . . C 2 77.929 20.344 72.991 1 45.53 ? C13 RPF 567 A 1 HETATM 16 C C14 RPF . . . C 2 77.475 21.37 73.858 1 45.75 ? C14 RPF 567 A 1 HETATM 17 C C20 RPF . . . C 2 75.19 23.999 74.917 1 42.65 ? C20 RPF 567 A 1 HETATM 18 C C21 RPF . . . C 2 75.059 25.508 74.614 1 43.12 ? C21 RPF 567 A 1 HETATM 19 N N2 RPF . . . C 2 73.908 26.179 75.197 1 43.15 ? N2 RPF 567 A 1 HETATM 20 C C22 RPF . . . C 2 72.864 25.554 75.997 1 41.42 ? C22 RPF 567 A 1 HETATM 21 C C23 RPF . . . C 2 73.026 24.052 76.281 1 39.79 ? C23 RPF 567 A 1 HETATM 22 N N3 RPF . . . C 2 74.125 23.38 75.76 1 42.71 ? N3 RPF 567 A 1 HETATM 23 O O5 RPF . . . C 2 72.164 23.522 76.967 1 42.26 ? O5 RPF 567 A 1 HETATM 24 C C24 RPF . . . C 2 76.634 23.773 75.488 1 43.71 ? C24 RPF 567 A 1 HETATM 25 O O6 RPF . . . C 2 77.51 23.866 74.382 1 47.13 ? O6 RPF 567 A 1 HETATM 26 C C25 RPF . . . C 2 73.988 21.051 75.034 1 44.68 ? C25 RPF 567 A 1 HETATM 27 C C26 RPF . . . C 2 74.241 22.019 76.05 1 45.31 ? C26 RPF 567 A 1 HETATM 28 C C27 RPF . . . C 2 74.626 21.573 77.357 1 44.78 ? C27 RPF 567 A 1 HETATM 29 C C28 RPF . . . C 2 74.752 20.199 77.636 1 45.5 ? C28 RPF 567 A 1 HETATM 30 C C29 RPF . . . C 2 74.5 19.232 76.625 1 45.1 ? C29 RPF 567 A 1 HETATM 31 C C30 RPF . . . C 2 74.118 19.665 75.327 1 44.97 ? C30 RPF 567 A 1 HETATM 32 O O7 RPF . . . C 2 74.609 17.863 76.837 1 44.9 ? O7 RPF 567 A 1 HETATM 33 C C31 RPF . . . C 2 74.471 17.341 78.151 1 43.5 ? C31 RPF 567 A 1 HETATM 34 C C32 RPF . . . C 2 74.51 15.799 78.069 1 44.4 ? C32 RPF 567 A 1 HETATM 35 C C33 RPF . . . C 2 75.604 15.217 77.139 1 44.4 ? C33 RPF 567 A 1 HETATM 36 C C34 RPF . . . C 2 80.593 19.976 70.268 1 46.89 ? C34 RPF 567 A 1 HETATM 37 C C35 RPF . . . C 2 80.508 21.395 69.657 1 48.19 ? C35 RPF 567 A 1 HETATM 38 N N1 RPF . . . C 2 79.978 22.366 70.638 1 47.68 ? N1 RPF 567 A 1 HETATM 39 C C36 RPF . . . C 2 79.264 19.581 70.963 1 46.28 ? C36 RPF 567 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #