data_2BKU
#
_model_server_result.job_id            MLo6pqupTyVYW-r2mx5gtQ 
_model_server_result.datetime_utc      '2024-11-01 23:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bku 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":220}' 
#
_entry.id    2BKU 
#
_exptl.entry_id    2BKU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BKU 
_cell.length_a            107.021 
_cell.length_b            127.879 
_cell.length_c            161.741 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BKU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 F MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc3 E O2B GTP . A GTP 220 1_555 F MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 E O3G GTP . A GTP 220 1_555 F MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc5 F MG MG . A MG 221 1_555 I O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc6 F MG MG . A MG 221 1_555 I O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc7 C OG1 THR 24 C THR 24 1_555 H MG MG . C MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc8 C OG1 THR 42 C THR 42 1_555 H MG MG . C MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc9 G O2B GTP . C GTP 220 1_555 H MG MG . C MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc10 G O3G GTP . C GTP 220 1_555 H MG MG . C MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc11 H MG MG . C MG 221 1_555 K O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc12 H MG MG . C MG 221 1_555 K O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     2BKU 
_atom_sites.fract_transf_matrix[1][1]    0.009344 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GTP A 1 220 220 GTP GTP . 
F 4 MG A 1 221 221 MG MG . 
G 3 GTP C 1 220 220 GTP GTP . 
H 4 MG C 1 221 221 MG MG . 
I 5 HOH A 1 2001 2001 HOH HOH . 
I 5 HOH A 2 2002 2002 HOH HOH . 
I 5 HOH A 3 2003 2003 HOH HOH . 
I 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH B 1 2001 2001 HOH HOH . 
J 5 HOH B 2 2002 2002 HOH HOH . 
J 5 HOH B 3 2003 2003 HOH HOH . 
J 5 HOH B 4 2004 2004 HOH HOH . 
J 5 HOH B 5 2005 2005 HOH HOH . 
J 5 HOH B 6 2006 2006 HOH HOH . 
J 5 HOH B 7 2007 2007 HOH HOH . 
J 5 HOH B 8 2008 2008 HOH HOH . 
J 5 HOH B 9 2009 2009 HOH HOH . 
J 5 HOH B 10 2010 2010 HOH HOH . 
J 5 HOH B 11 2011 2011 HOH HOH . 
J 5 HOH B 12 2012 2012 HOH HOH . 
J 5 HOH B 13 2013 2013 HOH HOH . 
J 5 HOH B 14 2014 2014 HOH HOH . 
J 5 HOH B 15 2015 2015 HOH HOH . 
J 5 HOH B 16 2016 2016 HOH HOH . 
J 5 HOH B 17 2017 2017 HOH HOH . 
J 5 HOH B 18 2018 2018 HOH HOH . 
J 5 HOH B 19 2019 2019 HOH HOH . 
J 5 HOH B 20 2020 2020 HOH HOH . 
J 5 HOH B 21 2021 2021 HOH HOH . 
J 5 HOH B 22 2022 2022 HOH HOH . 
J 5 HOH B 23 2023 2023 HOH HOH . 
J 5 HOH B 24 2024 2024 HOH HOH . 
J 5 HOH B 25 2025 2025 HOH HOH . 
J 5 HOH B 26 2026 2026 HOH HOH . 
J 5 HOH B 27 2027 2027 HOH HOH . 
J 5 HOH B 28 2028 2028 HOH HOH . 
J 5 HOH B 29 2029 2029 HOH HOH . 
K 5 HOH C 1 2001 2001 HOH HOH . 
K 5 HOH C 2 2002 2002 HOH HOH . 
K 5 HOH C 3 2003 2003 HOH HOH . 
K 5 HOH C 4 2004 2004 HOH HOH . 
K 5 HOH C 5 2005 2005 HOH HOH . 
K 5 HOH C 6 2006 2006 HOH HOH . 
K 5 HOH C 7 2007 2007 HOH HOH . 
L 5 HOH D 1 2001 2001 HOH HOH . 
L 5 HOH D 2 2002 2002 HOH HOH . 
L 5 HOH D 3 2003 2003 HOH HOH . 
L 5 HOH D 4 2004 2004 HOH HOH . 
L 5 HOH D 5 2005 2005 HOH HOH . 
L 5 HOH D 6 2006 2006 HOH HOH . 
L 5 HOH D 7 2007 2007 HOH HOH . 
L 5 HOH D 8 2008 2008 HOH HOH . 
L 5 HOH D 9 2009 2009 HOH HOH . 
L 5 HOH D 10 2010 2010 HOH HOH . 
L 5 HOH D 11 2011 2011 HOH HOH . 
L 5 HOH D 12 2012 2012 HOH HOH . 
L 5 HOH D 13 2013 2013 HOH HOH . 
L 5 HOH D 14 2014 2014 HOH HOH . 
L 5 HOH D 15 2015 2015 HOH HOH . 
L 5 HOH D 16 2016 2016 HOH HOH . 
L 5 HOH D 17 2017 2017 HOH HOH . 
L 5 HOH D 18 2018 2018 HOH HOH . 
L 5 HOH D 19 2019 2019 HOH HOH . 
L 5 HOH D 20 2020 2020 HOH HOH . 
L 5 HOH D 21 2021 2021 HOH HOH . 
L 5 HOH D 22 2022 2022 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 3 -68.759 -4.784 6.467 1 49.13 ? PG GTP 220 C 1 
HETATM 2 O O1G GTP . . . G 3 -68.758 -3.286 6.257 1 54.33 ? O1G GTP 220 C 1 
HETATM 3 O O2G GTP . . . G 3 -67.725 -5.149 7.522 1 43.94 ? O2G GTP 220 C 1 
HETATM 4 O O3G GTP . . . G 3 -70.147 -5.191 6.912 1 46.59 ? O3G GTP 220 C 1 
HETATM 5 O O3B GTP . . . G 3 -68.388 -5.424 5.027 1 48.64 ? O3B GTP 220 C 1 
HETATM 6 P PB GTP . . . G 3 -68.356 -7.002 4.698 1 50.38 ? PB GTP 220 C 1 
HETATM 7 O O1B GTP . . . G 3 -67.023 -7.621 5.094 1 43.97 ? O1B GTP 220 C 1 
HETATM 8 O O2B GTP . . . G 3 -69.521 -7.701 5.362 1 47.28 ? O2B GTP 220 C 1 
HETATM 9 O O3A GTP . . . G 3 -68.497 -7.025 3.086 1 51.73 ? O3A GTP 220 C 1 
HETATM 10 P PA GTP . . . G 3 -69.812 -7.651 2.395 1 51.02 ? PA GTP 220 C 1 
HETATM 11 O O1A GTP . . . G 3 -69.975 -9.095 2.822 1 49.39 ? O1A GTP 220 C 1 
HETATM 12 O O2A GTP . . . G 3 -71.004 -6.824 2.814 1 45.11 ? O2A GTP 220 C 1 
HETATM 13 O O5' GTP . . . G 3 -69.564 -7.684 0.796 1 47.41 ? O5' GTP 220 C 1 
HETATM 14 C C5' GTP . . . G 3 -68.544 -6.976 0.136 1 46.71 ? C5' GTP 220 C 1 
HETATM 15 C C4' GTP . . . G 3 -68.696 -7.007 -1.393 1 47.15 ? C4' GTP 220 C 1 
HETATM 16 O O4' GTP . . . G 3 -67.755 -7.885 -1.987 1 49.96 ? O4' GTP 220 C 1 
HETATM 17 C C3' GTP . . . G 3 -70.046 -7.453 -1.932 1 46.84 ? C3' GTP 220 C 1 
HETATM 18 O O3' GTP . . . G 3 -70.365 -6.591 -2.992 1 46.18 ? O3' GTP 220 C 1 
HETATM 19 C C2' GTP . . . G 3 -69.837 -8.857 -2.462 1 48.12 ? C2' GTP 220 C 1 
HETATM 20 O O2' GTP . . . G 3 -70.589 -9.141 -3.622 1 51.74 ? O2' GTP 220 C 1 
HETATM 21 C C1' GTP . . . G 3 -68.369 -8.846 -2.824 1 46.52 ? C1' GTP 220 C 1 
HETATM 22 N N9 GTP . . . G 3 -67.698 -10.139 -2.628 1 46.53 ? N9 GTP 220 C 1 
HETATM 23 C C8 GTP . . . G 3 -67.668 -10.923 -1.49 1 46.29 ? C8 GTP 220 C 1 
HETATM 24 N N7 GTP . . . G 3 -66.899 -12.016 -1.747 1 45.84 ? N7 GTP 220 C 1 
HETATM 25 C C5 GTP . . . G 3 -66.443 -11.93 -3.026 1 45.54 ? C5 GTP 220 C 1 
HETATM 26 C C6 GTP . . . G 3 -65.638 -12.758 -3.803 1 46.47 ? C6 GTP 220 C 1 
HETATM 27 O O6 GTP . . . G 3 -65.182 -13.804 -3.329 1 46.81 ? O6 GTP 220 C 1 
HETATM 28 N N1 GTP . . . G 3 -65.315 -12.389 -5.1 1 46.64 ? N1 GTP 220 C 1 
HETATM 29 C C2 GTP . . . G 3 -65.834 -11.223 -5.624 1 45.59 ? C2 GTP 220 C 1 
HETATM 30 N N2 GTP . . . G 3 -65.533 -10.879 -6.868 1 44.77 ? N2 GTP 220 C 1 
HETATM 31 N N3 GTP . . . G 3 -66.625 -10.402 -4.851 1 44.76 ? N3 GTP 220 C 1 
HETATM 32 C C4 GTP . . . G 3 -66.929 -10.752 -3.581 1 44.26 ? C4 GTP 220 C 1 
#
_model_server_stats.io_time_ms              94 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           32 
#