data_2BM9 # _model_server_result.job_id V_G_TgC8LiKGsq-VlL7niA _model_server_result.datetime_utc '2024-11-04 22:57:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 2BM9 # _exptl.entry_id 2BM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BM9 _cell.length_a 92.805 _cell.length_b 103.027 _cell.length_c 182.024 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 2BM9 _atom_sites.fract_transf_matrix[1][1] 0.010775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SAM A 1 301 301 SAM SAM . H 2 SAM B 1 301 301 SAM SAM . I 2 SAM C 1 301 301 SAM SAM . J 2 SAM D 1 301 301 SAM SAM . K 2 SAM E 1 301 301 SAM SAM . L 2 SAM F 1 301 301 SAM SAM . M 3 HOH A 1 2001 2001 HOH HOH . M 3 HOH A 2 2002 2002 HOH HOH . M 3 HOH A 3 2003 2003 HOH HOH . M 3 HOH A 4 2004 2004 HOH HOH . M 3 HOH A 5 2005 2005 HOH HOH . M 3 HOH A 6 2006 2006 HOH HOH . M 3 HOH A 7 2007 2007 HOH HOH . M 3 HOH A 8 2008 2008 HOH HOH . M 3 HOH A 9 2009 2009 HOH HOH . M 3 HOH A 10 2010 2010 HOH HOH . M 3 HOH A 11 2011 2011 HOH HOH . M 3 HOH A 12 2012 2012 HOH HOH . M 3 HOH A 13 2013 2013 HOH HOH . M 3 HOH A 14 2014 2014 HOH HOH . M 3 HOH A 15 2015 2015 HOH HOH . M 3 HOH A 16 2016 2016 HOH HOH . M 3 HOH A 17 2017 2017 HOH HOH . M 3 HOH A 18 2018 2018 HOH HOH . M 3 HOH A 19 2019 2019 HOH HOH . M 3 HOH A 20 2020 2020 HOH HOH . M 3 HOH A 21 2021 2021 HOH HOH . M 3 HOH A 22 2022 2022 HOH HOH . M 3 HOH A 23 2023 2023 HOH HOH . M 3 HOH A 24 2024 2024 HOH HOH . M 3 HOH A 25 2025 2025 HOH HOH . M 3 HOH A 26 2026 2026 HOH HOH . N 3 HOH B 1 2001 2001 HOH HOH . N 3 HOH B 2 2002 2002 HOH HOH . N 3 HOH B 3 2003 2003 HOH HOH . N 3 HOH B 4 2004 2004 HOH HOH . N 3 HOH B 5 2005 2005 HOH HOH . N 3 HOH B 6 2006 2006 HOH HOH . N 3 HOH B 7 2007 2007 HOH HOH . N 3 HOH B 8 2008 2008 HOH HOH . N 3 HOH B 9 2009 2009 HOH HOH . N 3 HOH B 10 2010 2010 HOH HOH . N 3 HOH B 11 2011 2011 HOH HOH . N 3 HOH B 12 2012 2012 HOH HOH . N 3 HOH B 13 2013 2013 HOH HOH . N 3 HOH B 14 2014 2014 HOH HOH . N 3 HOH B 15 2015 2015 HOH HOH . N 3 HOH B 16 2016 2016 HOH HOH . N 3 HOH B 17 2017 2017 HOH HOH . N 3 HOH B 18 2018 2018 HOH HOH . N 3 HOH B 19 2019 2019 HOH HOH . N 3 HOH B 20 2020 2020 HOH HOH . N 3 HOH B 21 2021 2021 HOH HOH . N 3 HOH B 22 2022 2022 HOH HOH . N 3 HOH B 23 2023 2023 HOH HOH . N 3 HOH B 24 2024 2024 HOH HOH . N 3 HOH B 25 2025 2025 HOH HOH . N 3 HOH B 26 2026 2026 HOH HOH . N 3 HOH B 27 2027 2027 HOH HOH . N 3 HOH B 28 2028 2028 HOH HOH . N 3 HOH B 29 2029 2029 HOH HOH . N 3 HOH B 30 2030 2030 HOH HOH . N 3 HOH B 31 2031 2031 HOH HOH . N 3 HOH B 32 2032 2032 HOH HOH . N 3 HOH B 33 2033 2033 HOH HOH . N 3 HOH B 34 2034 2034 HOH HOH . O 3 HOH C 1 2001 2001 HOH HOH . O 3 HOH C 2 2002 2002 HOH HOH . O 3 HOH C 3 2003 2003 HOH HOH . O 3 HOH C 4 2004 2004 HOH HOH . O 3 HOH C 5 2005 2005 HOH HOH . O 3 HOH C 6 2006 2006 HOH HOH . O 3 HOH C 7 2007 2007 HOH HOH . O 3 HOH C 8 2008 2008 HOH HOH . O 3 HOH C 9 2009 2009 HOH HOH . O 3 HOH C 10 2010 2010 HOH HOH . O 3 HOH C 11 2011 2011 HOH HOH . O 3 HOH C 12 2012 2012 HOH HOH . O 3 HOH C 13 2013 2013 HOH HOH . O 3 HOH C 14 2014 2014 HOH HOH . O 3 HOH C 15 2015 2015 HOH HOH . O 3 HOH C 16 2016 2016 HOH HOH . O 3 HOH C 17 2017 2017 HOH HOH . O 3 HOH C 18 2018 2018 HOH HOH . O 3 HOH C 19 2019 2019 HOH HOH . O 3 HOH C 20 2020 2020 HOH HOH . O 3 HOH C 21 2021 2021 HOH HOH . O 3 HOH C 22 2022 2022 HOH HOH . O 3 HOH C 23 2023 2023 HOH HOH . O 3 HOH C 24 2024 2024 HOH HOH . O 3 HOH C 25 2025 2025 HOH HOH . O 3 HOH C 26 2026 2026 HOH HOH . O 3 HOH C 27 2027 2027 HOH HOH . O 3 HOH C 28 2028 2028 HOH HOH . O 3 HOH C 29 2029 2029 HOH HOH . O 3 HOH C 30 2030 2030 HOH HOH . O 3 HOH C 31 2031 2031 HOH HOH . O 3 HOH C 32 2032 2032 HOH HOH . O 3 HOH C 33 2033 2033 HOH HOH . O 3 HOH C 34 2034 2034 HOH HOH . O 3 HOH C 35 2035 2035 HOH HOH . O 3 HOH C 36 2036 2036 HOH HOH . P 3 HOH D 1 2001 2001 HOH HOH . P 3 HOH D 2 2002 2002 HOH HOH . P 3 HOH D 3 2003 2003 HOH HOH . P 3 HOH D 4 2004 2004 HOH HOH . P 3 HOH D 5 2005 2005 HOH HOH . P 3 HOH D 6 2006 2006 HOH HOH . P 3 HOH D 7 2007 2007 HOH HOH . P 3 HOH D 8 2008 2008 HOH HOH . P 3 HOH D 9 2009 2009 HOH HOH . P 3 HOH D 10 2010 2010 HOH HOH . P 3 HOH D 11 2011 2011 HOH HOH . P 3 HOH D 12 2012 2012 HOH HOH . P 3 HOH D 13 2013 2013 HOH HOH . P 3 HOH D 14 2014 2014 HOH HOH . P 3 HOH D 15 2015 2015 HOH HOH . P 3 HOH D 16 2016 2016 HOH HOH . P 3 HOH D 17 2017 2017 HOH HOH . P 3 HOH D 18 2018 2018 HOH HOH . P 3 HOH D 19 2019 2019 HOH HOH . P 3 HOH D 20 2020 2020 HOH HOH . P 3 HOH D 21 2021 2021 HOH HOH . P 3 HOH D 22 2022 2022 HOH HOH . P 3 HOH D 23 2023 2023 HOH HOH . P 3 HOH D 24 2024 2024 HOH HOH . P 3 HOH D 25 2025 2025 HOH HOH . Q 3 HOH E 1 2001 2001 HOH HOH . Q 3 HOH E 2 2002 2002 HOH HOH . Q 3 HOH E 3 2003 2003 HOH HOH . Q 3 HOH E 4 2004 2004 HOH HOH . Q 3 HOH E 5 2005 2005 HOH HOH . Q 3 HOH E 6 2006 2006 HOH HOH . Q 3 HOH E 7 2007 2007 HOH HOH . Q 3 HOH E 8 2008 2008 HOH HOH . Q 3 HOH E 9 2009 2009 HOH HOH . Q 3 HOH E 10 2010 2010 HOH HOH . Q 3 HOH E 11 2011 2011 HOH HOH . Q 3 HOH E 12 2012 2012 HOH HOH . Q 3 HOH E 13 2013 2013 HOH HOH . Q 3 HOH E 14 2014 2014 HOH HOH . Q 3 HOH E 15 2015 2015 HOH HOH . Q 3 HOH E 16 2016 2016 HOH HOH . Q 3 HOH E 17 2017 2017 HOH HOH . Q 3 HOH E 18 2018 2018 HOH HOH . Q 3 HOH E 19 2019 2019 HOH HOH . Q 3 HOH E 20 2020 2020 HOH HOH . Q 3 HOH E 21 2021 2021 HOH HOH . Q 3 HOH E 22 2022 2022 HOH HOH . Q 3 HOH E 23 2023 2023 HOH HOH . R 3 HOH F 1 2001 2001 HOH HOH . R 3 HOH F 2 2002 2002 HOH HOH . R 3 HOH F 3 2003 2003 HOH HOH . R 3 HOH F 4 2004 2004 HOH HOH . R 3 HOH F 5 2005 2005 HOH HOH . R 3 HOH F 6 2006 2006 HOH HOH . R 3 HOH F 7 2007 2007 HOH HOH . R 3 HOH F 8 2008 2008 HOH HOH . R 3 HOH F 9 2009 2009 HOH HOH . R 3 HOH F 10 2010 2010 HOH HOH . R 3 HOH F 11 2011 2011 HOH HOH . R 3 HOH F 12 2012 2012 HOH HOH . R 3 HOH F 13 2013 2013 HOH HOH . R 3 HOH F 14 2014 2014 HOH HOH . R 3 HOH F 15 2015 2015 HOH HOH . R 3 HOH F 16 2016 2016 HOH HOH . R 3 HOH F 17 2017 2017 HOH HOH . R 3 HOH F 18 2018 2018 HOH HOH . R 3 HOH F 19 2019 2019 HOH HOH . R 3 HOH F 20 2020 2020 HOH HOH . R 3 HOH F 21 2021 2021 HOH HOH . R 3 HOH F 22 2022 2022 HOH HOH . R 3 HOH F 23 2023 2023 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . I 2 20.901 42.065 26.881 1 150.67 ? N SAM 301 C 1 HETATM 2 C CA SAM . . . I 2 20.059 42.788 25.935 1 150.66 ? CA SAM 301 C 1 HETATM 3 C C SAM . . . I 2 20.834 43.993 25.389 1 150.65 ? C SAM 301 C 1 HETATM 4 O O SAM . . . I 2 20.958 45.05 26.005 1 150.64 ? O SAM 301 C 1 HETATM 5 O OXT SAM . . . I 2 21.395 43.959 24.295 1 150.56 ? OXT SAM 301 C 1 HETATM 6 C CB SAM . . . I 2 18.721 43.166 26.593 1 150.63 ? CB SAM 301 C 1 HETATM 7 C CG SAM . . . I 2 17.519 42.269 26.246 1 149.95 ? CG SAM 301 C 1 HETATM 8 S SD SAM . . . I 2 15.935 42.832 26.945 1 147.91 ? SD SAM 301 C 1 HETATM 9 C CE SAM . . . I 2 16.143 42.432 28.701 1 148.73 ? CE SAM 301 C 1 HETATM 10 C C5' SAM . . . I 2 14.632 41.676 26.435 1 145.63 ? C5' SAM 301 C 1 HETATM 11 C C4' SAM . . . I 2 14.519 41.435 24.934 1 143.61 ? C4' SAM 301 C 1 HETATM 12 O O4' SAM . . . I 2 13.967 40.158 24.73 1 141.9 ? O4' SAM 301 C 1 HETATM 13 C C3' SAM . . . I 2 13.611 42.392 24.171 1 142.58 ? C3' SAM 301 C 1 HETATM 14 O O3' SAM . . . I 2 14.313 42.987 23.111 1 142.75 ? O3' SAM 301 C 1 HETATM 15 C C2' SAM . . . I 2 12.526 41.538 23.569 1 141.48 ? C2' SAM 301 C 1 HETATM 16 O O2' SAM . . . I 2 12.2 41.944 22.263 1 141.13 ? O2' SAM 301 C 1 HETATM 17 C C1' SAM . . . I 2 13.184 40.18 23.565 1 140.43 ? C1' SAM 301 C 1 HETATM 18 N N9 SAM . . . I 2 12.223 39.078 23.571 1 138.03 ? N9 SAM 301 C 1 HETATM 19 C C8 SAM . . . I 2 11.136 38.934 24.38 1 137.44 ? C8 SAM 301 C 1 HETATM 20 N N7 SAM . . . I 2 10.527 37.775 24.058 1 136.5 ? N7 SAM 301 C 1 HETATM 21 C C5 SAM . . . I 2 11.215 37.183 23.068 1 135.78 ? C5 SAM 301 C 1 HETATM 22 C C6 SAM . . . I 2 11.028 36.001 22.382 1 135.11 ? C6 SAM 301 C 1 HETATM 23 N N6 SAM . . . I 2 10 35.228 22.683 1 135.01 ? N6 SAM 301 C 1 HETATM 24 N N1 SAM . . . I 2 11.906 35.634 21.392 1 134.88 ? N1 SAM 301 C 1 HETATM 25 C C2 SAM . . . I 2 12.969 36.451 21.089 1 135.27 ? C2 SAM 301 C 1 HETATM 26 N N3 SAM . . . I 2 13.146 37.629 21.78 1 135.68 ? N3 SAM 301 C 1 HETATM 27 C C4 SAM . . . I 2 12.284 37.99 22.754 1 136.39 ? C4 SAM 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #