data_2BM9
#
_model_server_result.job_id            o7VqqzI0em3eLmV73RVkLg 
_model_server_result.datetime_utc      '2024-11-04 22:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    2BM9 
#
_exptl.entry_id    2BM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BM9 
_cell.length_a            92.805 
_cell.length_b            103.027 
_cell.length_c            182.024 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     2BM9 
_atom_sites.fract_transf_matrix[1][1]    0.010775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005494 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAM A 1 301 301 SAM SAM . 
H 2 SAM B 1 301 301 SAM SAM . 
I 2 SAM C 1 301 301 SAM SAM . 
J 2 SAM D 1 301 301 SAM SAM . 
K 2 SAM E 1 301 301 SAM SAM . 
L 2 SAM F 1 301 301 SAM SAM . 
M 3 HOH A 1 2001 2001 HOH HOH . 
M 3 HOH A 2 2002 2002 HOH HOH . 
M 3 HOH A 3 2003 2003 HOH HOH . 
M 3 HOH A 4 2004 2004 HOH HOH . 
M 3 HOH A 5 2005 2005 HOH HOH . 
M 3 HOH A 6 2006 2006 HOH HOH . 
M 3 HOH A 7 2007 2007 HOH HOH . 
M 3 HOH A 8 2008 2008 HOH HOH . 
M 3 HOH A 9 2009 2009 HOH HOH . 
M 3 HOH A 10 2010 2010 HOH HOH . 
M 3 HOH A 11 2011 2011 HOH HOH . 
M 3 HOH A 12 2012 2012 HOH HOH . 
M 3 HOH A 13 2013 2013 HOH HOH . 
M 3 HOH A 14 2014 2014 HOH HOH . 
M 3 HOH A 15 2015 2015 HOH HOH . 
M 3 HOH A 16 2016 2016 HOH HOH . 
M 3 HOH A 17 2017 2017 HOH HOH . 
M 3 HOH A 18 2018 2018 HOH HOH . 
M 3 HOH A 19 2019 2019 HOH HOH . 
M 3 HOH A 20 2020 2020 HOH HOH . 
M 3 HOH A 21 2021 2021 HOH HOH . 
M 3 HOH A 22 2022 2022 HOH HOH . 
M 3 HOH A 23 2023 2023 HOH HOH . 
M 3 HOH A 24 2024 2024 HOH HOH . 
M 3 HOH A 25 2025 2025 HOH HOH . 
M 3 HOH A 26 2026 2026 HOH HOH . 
N 3 HOH B 1 2001 2001 HOH HOH . 
N 3 HOH B 2 2002 2002 HOH HOH . 
N 3 HOH B 3 2003 2003 HOH HOH . 
N 3 HOH B 4 2004 2004 HOH HOH . 
N 3 HOH B 5 2005 2005 HOH HOH . 
N 3 HOH B 6 2006 2006 HOH HOH . 
N 3 HOH B 7 2007 2007 HOH HOH . 
N 3 HOH B 8 2008 2008 HOH HOH . 
N 3 HOH B 9 2009 2009 HOH HOH . 
N 3 HOH B 10 2010 2010 HOH HOH . 
N 3 HOH B 11 2011 2011 HOH HOH . 
N 3 HOH B 12 2012 2012 HOH HOH . 
N 3 HOH B 13 2013 2013 HOH HOH . 
N 3 HOH B 14 2014 2014 HOH HOH . 
N 3 HOH B 15 2015 2015 HOH HOH . 
N 3 HOH B 16 2016 2016 HOH HOH . 
N 3 HOH B 17 2017 2017 HOH HOH . 
N 3 HOH B 18 2018 2018 HOH HOH . 
N 3 HOH B 19 2019 2019 HOH HOH . 
N 3 HOH B 20 2020 2020 HOH HOH . 
N 3 HOH B 21 2021 2021 HOH HOH . 
N 3 HOH B 22 2022 2022 HOH HOH . 
N 3 HOH B 23 2023 2023 HOH HOH . 
N 3 HOH B 24 2024 2024 HOH HOH . 
N 3 HOH B 25 2025 2025 HOH HOH . 
N 3 HOH B 26 2026 2026 HOH HOH . 
N 3 HOH B 27 2027 2027 HOH HOH . 
N 3 HOH B 28 2028 2028 HOH HOH . 
N 3 HOH B 29 2029 2029 HOH HOH . 
N 3 HOH B 30 2030 2030 HOH HOH . 
N 3 HOH B 31 2031 2031 HOH HOH . 
N 3 HOH B 32 2032 2032 HOH HOH . 
N 3 HOH B 33 2033 2033 HOH HOH . 
N 3 HOH B 34 2034 2034 HOH HOH . 
O 3 HOH C 1 2001 2001 HOH HOH . 
O 3 HOH C 2 2002 2002 HOH HOH . 
O 3 HOH C 3 2003 2003 HOH HOH . 
O 3 HOH C 4 2004 2004 HOH HOH . 
O 3 HOH C 5 2005 2005 HOH HOH . 
O 3 HOH C 6 2006 2006 HOH HOH . 
O 3 HOH C 7 2007 2007 HOH HOH . 
O 3 HOH C 8 2008 2008 HOH HOH . 
O 3 HOH C 9 2009 2009 HOH HOH . 
O 3 HOH C 10 2010 2010 HOH HOH . 
O 3 HOH C 11 2011 2011 HOH HOH . 
O 3 HOH C 12 2012 2012 HOH HOH . 
O 3 HOH C 13 2013 2013 HOH HOH . 
O 3 HOH C 14 2014 2014 HOH HOH . 
O 3 HOH C 15 2015 2015 HOH HOH . 
O 3 HOH C 16 2016 2016 HOH HOH . 
O 3 HOH C 17 2017 2017 HOH HOH . 
O 3 HOH C 18 2018 2018 HOH HOH . 
O 3 HOH C 19 2019 2019 HOH HOH . 
O 3 HOH C 20 2020 2020 HOH HOH . 
O 3 HOH C 21 2021 2021 HOH HOH . 
O 3 HOH C 22 2022 2022 HOH HOH . 
O 3 HOH C 23 2023 2023 HOH HOH . 
O 3 HOH C 24 2024 2024 HOH HOH . 
O 3 HOH C 25 2025 2025 HOH HOH . 
O 3 HOH C 26 2026 2026 HOH HOH . 
O 3 HOH C 27 2027 2027 HOH HOH . 
O 3 HOH C 28 2028 2028 HOH HOH . 
O 3 HOH C 29 2029 2029 HOH HOH . 
O 3 HOH C 30 2030 2030 HOH HOH . 
O 3 HOH C 31 2031 2031 HOH HOH . 
O 3 HOH C 32 2032 2032 HOH HOH . 
O 3 HOH C 33 2033 2033 HOH HOH . 
O 3 HOH C 34 2034 2034 HOH HOH . 
O 3 HOH C 35 2035 2035 HOH HOH . 
O 3 HOH C 36 2036 2036 HOH HOH . 
P 3 HOH D 1 2001 2001 HOH HOH . 
P 3 HOH D 2 2002 2002 HOH HOH . 
P 3 HOH D 3 2003 2003 HOH HOH . 
P 3 HOH D 4 2004 2004 HOH HOH . 
P 3 HOH D 5 2005 2005 HOH HOH . 
P 3 HOH D 6 2006 2006 HOH HOH . 
P 3 HOH D 7 2007 2007 HOH HOH . 
P 3 HOH D 8 2008 2008 HOH HOH . 
P 3 HOH D 9 2009 2009 HOH HOH . 
P 3 HOH D 10 2010 2010 HOH HOH . 
P 3 HOH D 11 2011 2011 HOH HOH . 
P 3 HOH D 12 2012 2012 HOH HOH . 
P 3 HOH D 13 2013 2013 HOH HOH . 
P 3 HOH D 14 2014 2014 HOH HOH . 
P 3 HOH D 15 2015 2015 HOH HOH . 
P 3 HOH D 16 2016 2016 HOH HOH . 
P 3 HOH D 17 2017 2017 HOH HOH . 
P 3 HOH D 18 2018 2018 HOH HOH . 
P 3 HOH D 19 2019 2019 HOH HOH . 
P 3 HOH D 20 2020 2020 HOH HOH . 
P 3 HOH D 21 2021 2021 HOH HOH . 
P 3 HOH D 22 2022 2022 HOH HOH . 
P 3 HOH D 23 2023 2023 HOH HOH . 
P 3 HOH D 24 2024 2024 HOH HOH . 
P 3 HOH D 25 2025 2025 HOH HOH . 
Q 3 HOH E 1 2001 2001 HOH HOH . 
Q 3 HOH E 2 2002 2002 HOH HOH . 
Q 3 HOH E 3 2003 2003 HOH HOH . 
Q 3 HOH E 4 2004 2004 HOH HOH . 
Q 3 HOH E 5 2005 2005 HOH HOH . 
Q 3 HOH E 6 2006 2006 HOH HOH . 
Q 3 HOH E 7 2007 2007 HOH HOH . 
Q 3 HOH E 8 2008 2008 HOH HOH . 
Q 3 HOH E 9 2009 2009 HOH HOH . 
Q 3 HOH E 10 2010 2010 HOH HOH . 
Q 3 HOH E 11 2011 2011 HOH HOH . 
Q 3 HOH E 12 2012 2012 HOH HOH . 
Q 3 HOH E 13 2013 2013 HOH HOH . 
Q 3 HOH E 14 2014 2014 HOH HOH . 
Q 3 HOH E 15 2015 2015 HOH HOH . 
Q 3 HOH E 16 2016 2016 HOH HOH . 
Q 3 HOH E 17 2017 2017 HOH HOH . 
Q 3 HOH E 18 2018 2018 HOH HOH . 
Q 3 HOH E 19 2019 2019 HOH HOH . 
Q 3 HOH E 20 2020 2020 HOH HOH . 
Q 3 HOH E 21 2021 2021 HOH HOH . 
Q 3 HOH E 22 2022 2022 HOH HOH . 
Q 3 HOH E 23 2023 2023 HOH HOH . 
R 3 HOH F 1 2001 2001 HOH HOH . 
R 3 HOH F 2 2002 2002 HOH HOH . 
R 3 HOH F 3 2003 2003 HOH HOH . 
R 3 HOH F 4 2004 2004 HOH HOH . 
R 3 HOH F 5 2005 2005 HOH HOH . 
R 3 HOH F 6 2006 2006 HOH HOH . 
R 3 HOH F 7 2007 2007 HOH HOH . 
R 3 HOH F 8 2008 2008 HOH HOH . 
R 3 HOH F 9 2009 2009 HOH HOH . 
R 3 HOH F 10 2010 2010 HOH HOH . 
R 3 HOH F 11 2011 2011 HOH HOH . 
R 3 HOH F 12 2012 2012 HOH HOH . 
R 3 HOH F 13 2013 2013 HOH HOH . 
R 3 HOH F 14 2014 2014 HOH HOH . 
R 3 HOH F 15 2015 2015 HOH HOH . 
R 3 HOH F 16 2016 2016 HOH HOH . 
R 3 HOH F 17 2017 2017 HOH HOH . 
R 3 HOH F 18 2018 2018 HOH HOH . 
R 3 HOH F 19 2019 2019 HOH HOH . 
R 3 HOH F 20 2020 2020 HOH HOH . 
R 3 HOH F 21 2021 2021 HOH HOH . 
R 3 HOH F 22 2022 2022 HOH HOH . 
R 3 HOH F 23 2023 2023 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . J 2 44.22 59.004 73.416 1 190.52 ? N SAM 301 D 1 
HETATM 2 C CA SAM . . . J 2 44.012 60.282 72.748 1 190.5 ? CA SAM 301 D 1 
HETATM 3 C C SAM . . . J 2 42.716 60.904 73.252 1 190.51 ? C SAM 301 D 1 
HETATM 4 O O SAM . . . J 2 41.658 60.28 73.167 1 190.48 ? O SAM 301 D 1 
HETATM 5 O OXT SAM . . . J 2 42.721 62.027 73.758 1 190.48 ? OXT SAM 301 D 1 
HETATM 6 C CB SAM . . . J 2 43.989 60.112 71.226 1 190.49 ? CB SAM 301 D 1 
HETATM 7 C CG SAM . . . J 2 45.329 60.382 70.536 1 190.16 ? CG SAM 301 D 1 
HETATM 8 S SD SAM . . . J 2 45.163 60.828 68.787 1 189.11 ? SD SAM 301 D 1 
HETATM 9 C CE SAM . . . J 2 44.12 59.479 68.181 1 189.39 ? CE SAM 301 D 1 
HETATM 10 C C5' SAM . . . J 2 46.752 60.351 68.066 1 188.36 ? C5' SAM 301 D 1 
HETATM 11 C C4' SAM . . . J 2 47.957 60.929 68.794 1 187.57 ? C4' SAM 301 D 1 
HETATM 12 O O4' SAM . . . J 2 49.099 60.163 68.476 1 187.06 ? O4' SAM 301 D 1 
HETATM 13 C C3' SAM . . . J 2 48.261 62.367 68.406 1 187.08 ? C3' SAM 301 D 1 
HETATM 14 O O3' SAM . . . J 2 48.224 63.19 69.546 1 186.7 ? O3' SAM 301 D 1 
HETATM 15 C C2' SAM . . . J 2 49.653 62.334 67.814 1 186.77 ? C2' SAM 301 D 1 
HETATM 16 O O2' SAM . . . J 2 50.44 63.4 68.283 1 186.9 ? O2' SAM 301 D 1 
HETATM 17 C C1' SAM . . . J 2 50.213 61.005 68.287 1 186.47 ? C1' SAM 301 D 1 
HETATM 18 N N9 SAM . . . J 2 51.159 60.392 67.338 1 185.58 ? N9 SAM 301 D 1 
HETATM 19 C C8 SAM . . . J 2 51.006 60.232 65.987 1 185.3 ? C8 SAM 301 D 1 
HETATM 20 N N7 SAM . . . J 2 52.11 59.615 65.506 1 184.97 ? N7 SAM 301 D 1 
HETATM 21 C C5 SAM . . . J 2 52.957 59.376 66.529 1 184.68 ? C5 SAM 301 D 1 
HETATM 22 C C6 SAM . . . J 2 54.21 58.78 66.597 1 184.34 ? C6 SAM 301 D 1 
HETATM 23 N N6 SAM . . . J 2 54.789 58.315 65.497 1 184.18 ? N6 SAM 301 D 1 
HETATM 24 N N1 SAM . . . J 2 54.85 58.677 67.816 1 184.2 ? N1 SAM 301 D 1 
HETATM 25 C C2 SAM . . . J 2 54.251 59.161 68.961 1 184.26 ? C2 SAM 301 D 1 
HETATM 26 N N3 SAM . . . J 2 53.005 59.748 68.882 1 184.53 ? N3 SAM 301 D 1 
HETATM 27 C C4 SAM . . . J 2 52.369 59.857 67.688 1 184.94 ? C4 SAM 301 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#