data_2BMB # _model_server_result.job_id A8cVF2B4zfNCAcD1wUvDjA _model_server_result.datetime_utc '2024-11-29 16:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1865}' # _entry.id 2BMB # _exptl.entry_id 2BMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PTERIN-6-YL-METHYL-MONOPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BMB _cell.length_a 92.566 _cell.length_b 92.566 _cell.length_c 192.401 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C7 H8 N5 O5 P' _chem_comp.formula_weight 273.143 _chem_comp.id PMM _chem_comp.mon_nstd_flag . _chem_comp.name PTERIN-6-YL-METHYL-MONOPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C6 PMM doub 260 n y N5 C4A PMM sing 261 n y C6 C7 PMM sing 262 n y C6 C9 PMM sing 263 n n C7 N8 PMM doub 264 n y C7 H7 PMM sing 265 n n N8 C8A PMM sing 266 n y N1 C2 PMM doub 267 n y N1 C8A PMM sing 268 n y C2 N2 PMM sing 269 n n C2 N3 PMM sing 270 n y N2 HN21 PMM sing 271 n n N2 HN22 PMM sing 272 n n N3 C4 PMM sing 273 n y N3 HN3 PMM sing 274 n n C4 O4 PMM doub 275 n n C4 C4A PMM sing 276 n y C4A C8A PMM doub 277 n y C9 O10 PMM sing 278 n n C9 H91 PMM sing 279 n n C9 H92 PMM sing 280 n n O10 PA PMM sing 281 n n PA O1P PMM doub 282 n n PA O2P PMM sing 283 n n PA O3P PMM sing 284 n n O2P HOP2 PMM sing 285 n n O3P HOP3 PMM sing 286 n n # _atom_sites.entry_id 2BMB _atom_sites.fract_transf_matrix[1][1] 0.010803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMM A 1 1865 1865 PMM PMM . C 2 PMM A 1 1866 1866 PMM PMM . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . D 3 HOH A 44 2044 2044 HOH HOH . D 3 HOH A 45 2045 2045 HOH HOH . D 3 HOH A 46 2046 2046 HOH HOH . D 3 HOH A 47 2047 2047 HOH HOH . D 3 HOH A 48 2048 2048 HOH HOH . D 3 HOH A 49 2049 2049 HOH HOH . D 3 HOH A 50 2050 2050 HOH HOH . D 3 HOH A 51 2051 2051 HOH HOH . D 3 HOH A 52 2052 2052 HOH HOH . D 3 HOH A 53 2053 2053 HOH HOH . D 3 HOH A 54 2054 2054 HOH HOH . D 3 HOH A 55 2055 2055 HOH HOH . D 3 HOH A 56 2056 2056 HOH HOH . D 3 HOH A 57 2057 2057 HOH HOH . D 3 HOH A 58 2058 2058 HOH HOH . D 3 HOH A 59 2059 2059 HOH HOH . D 3 HOH A 60 2060 2060 HOH HOH . D 3 HOH A 61 2061 2061 HOH HOH . D 3 HOH A 62 2062 2062 HOH HOH . D 3 HOH A 63 2063 2063 HOH HOH . D 3 HOH A 64 2064 2064 HOH HOH . D 3 HOH A 65 2065 2065 HOH HOH . D 3 HOH A 66 2066 2066 HOH HOH . D 3 HOH A 67 2067 2067 HOH HOH . D 3 HOH A 68 2068 2068 HOH HOH . D 3 HOH A 69 2069 2069 HOH HOH . D 3 HOH A 70 2070 2070 HOH HOH . D 3 HOH A 71 2071 2071 HOH HOH . D 3 HOH A 72 2072 2072 HOH HOH . D 3 HOH A 73 2073 2073 HOH HOH . D 3 HOH A 74 2074 2074 HOH HOH . D 3 HOH A 75 2075 2075 HOH HOH . D 3 HOH A 76 2076 2076 HOH HOH . D 3 HOH A 77 2077 2077 HOH HOH . D 3 HOH A 78 2078 2078 HOH HOH . D 3 HOH A 79 2079 2079 HOH HOH . D 3 HOH A 80 2080 2080 HOH HOH . D 3 HOH A 81 2081 2081 HOH HOH . D 3 HOH A 82 2082 2082 HOH HOH . D 3 HOH A 83 2083 2083 HOH HOH . D 3 HOH A 84 2084 2084 HOH HOH . D 3 HOH A 85 2085 2085 HOH HOH . D 3 HOH A 86 2086 2086 HOH HOH . D 3 HOH A 87 2087 2087 HOH HOH . D 3 HOH A 88 2088 2088 HOH HOH . D 3 HOH A 89 2089 2089 HOH HOH . D 3 HOH A 90 2090 2090 HOH HOH . D 3 HOH A 91 2091 2091 HOH HOH . D 3 HOH A 92 2092 2092 HOH HOH . D 3 HOH A 93 2093 2093 HOH HOH . D 3 HOH A 94 2094 2094 HOH HOH . D 3 HOH A 95 2095 2095 HOH HOH . D 3 HOH A 96 2096 2096 HOH HOH . D 3 HOH A 97 2097 2097 HOH HOH . D 3 HOH A 98 2098 2098 HOH HOH . D 3 HOH A 99 2099 2099 HOH HOH . D 3 HOH A 100 2100 2100 HOH HOH . D 3 HOH A 101 2101 2101 HOH HOH . D 3 HOH A 102 2102 2102 HOH HOH . D 3 HOH A 103 2103 2103 HOH HOH . D 3 HOH A 104 2104 2104 HOH HOH . D 3 HOH A 105 2105 2105 HOH HOH . D 3 HOH A 106 2106 2106 HOH HOH . D 3 HOH A 107 2107 2107 HOH HOH . D 3 HOH A 108 2108 2108 HOH HOH . D 3 HOH A 109 2109 2109 HOH HOH . D 3 HOH A 110 2110 2110 HOH HOH . D 3 HOH A 111 2111 2111 HOH HOH . D 3 HOH A 112 2112 2112 HOH HOH . D 3 HOH A 113 2113 2113 HOH HOH . D 3 HOH A 114 2114 2114 HOH HOH . D 3 HOH A 115 2115 2115 HOH HOH . D 3 HOH A 116 2116 2116 HOH HOH . D 3 HOH A 117 2117 2117 HOH HOH . D 3 HOH A 118 2118 2118 HOH HOH . D 3 HOH A 119 2119 2119 HOH HOH . D 3 HOH A 120 2120 2120 HOH HOH . D 3 HOH A 121 2121 2121 HOH HOH . D 3 HOH A 122 2122 2122 HOH HOH . D 3 HOH A 123 2123 2123 HOH HOH . D 3 HOH A 124 2124 2124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 PMM . . . B 2 3.489 20.697 56.693 1 50.41 ? N5 PMM 1865 A 1 HETATM 2 C C6 PMM . . . B 2 4.642 20.283 57.052 1 51.14 ? C6 PMM 1865 A 1 HETATM 3 C C7 PMM . . . B 2 5.909 20.942 56.551 1 46.96 ? C7 PMM 1865 A 1 HETATM 4 N N8 PMM . . . B 2 5.728 22.07 55.65 1 49.64 ? N8 PMM 1865 A 1 HETATM 5 N N1 PMM . . . B 2 4.355 23.567 54.442 1 46.83 ? N1 PMM 1865 A 1 HETATM 6 C C2 PMM . . . B 2 3.125 24.011 54.082 1 48.58 ? C2 PMM 1865 A 1 HETATM 7 N N2 PMM . . . B 2 3.048 25.084 53.258 1 47.05 ? N2 PMM 1865 A 1 HETATM 8 N N3 PMM . . . B 2 1.988 23.418 54.529 1 49.36 ? N3 PMM 1865 A 1 HETATM 9 C C4 PMM . . . B 2 2.006 22.362 55.362 1 47.53 ? C4 PMM 1865 A 1 HETATM 10 O O4 PMM . . . B 2 0.947 21.844 55.758 1 47.47 ? O4 PMM 1865 A 1 HETATM 11 C C4A PMM . . . B 2 3.316 21.833 55.801 1 48.98 ? C4A PMM 1865 A 1 HETATM 12 C C8A PMM . . . B 2 4.509 22.51 55.276 1 49 ? C8A PMM 1865 A 1 HETATM 13 C C9 PMM . . . B 2 4.731 19.085 57.976 1 51.7 ? C9 PMM 1865 A 1 HETATM 14 O O10 PMM . . . B 2 4.764 17.898 57.159 1 72.19 ? O10 PMM 1865 A 1 HETATM 15 P PA PMM . . . B 2 6.09 16.992 56.916 1 80.32 ? PA PMM 1865 A 1 HETATM 16 O O1P PMM . . . B 2 6.857 17.103 58.22 1 81.9 ? O1P PMM 1865 A 1 HETATM 17 O O2P PMM . . . B 2 6.826 17.58 55.729 1 78.8 ? O2P PMM 1865 A 1 HETATM 18 O O3P PMM . . . B 2 5.502 15.631 56.637 1 81.39 ? O3P PMM 1865 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 18 #