data_2BML
#
_model_server_result.job_id            qKZVU45hyJDezDCcdr4aTQ 
_model_server_result.datetime_utc      '2024-12-26 23:08:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bml 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1319}' 
#
_entry.id    2BML 
#
_exptl.entry_id    2BML 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BML 
_cell.length_a            101.67 
_cell.length_b            94.48 
_cell.length_c            38.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2BML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
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_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 399 n n 
C C2 TRS sing 400 n n 
C C3 TRS sing 401 n n 
C N TRS sing 402 n n 
C1 O1 TRS sing 403 n n 
C1 H11 TRS sing 404 n n 
C1 H12 TRS sing 405 n n 
C2 O2 TRS sing 406 n n 
C2 H21 TRS sing 407 n n 
C2 H22 TRS sing 408 n n 
C3 O3 TRS sing 409 n n 
C3 H31 TRS sing 410 n n 
C3 H32 TRS sing 411 n n 
N HN1 TRS sing 412 n n 
N HN2 TRS sing 413 n n 
N HN3 TRS sing 414 n n 
O1 HO1 TRS sing 415 n n 
O2 HO2 TRS sing 416 n n 
O3 HO3 TRS sing 417 n n 
#
_atom_sites.entry_id                     2BML 
_atom_sites.fract_transf_matrix[1][1]    0.009836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010584 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TRS A 1 1319 1319 TRS TRS . 
D 2 TRS A 1 1320 1320 TRS TRS . 
E 3 P6G A 1 1321 1321 P6G P6G . 
F 4 XED B 1 1319 1319 XED XED . 
G 3 P6G B 1 1320 1320 P6G P6G . 
H 5 PG4 B 1 1321 1321 PG4 PG4 . 
I 6 SO4 B 1 1322 1322 SO4 SO4 . 
J 6 SO4 B 1 1323 1323 SO4 SO4 . 
K 6 SO4 B 1 1324 1324 SO4 SO4 . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
L 7 HOH A 15 2015 2015 HOH HOH . 
L 7 HOH A 16 2016 2016 HOH HOH . 
L 7 HOH A 17 2017 2017 HOH HOH . 
L 7 HOH A 18 2018 2018 HOH HOH . 
L 7 HOH A 19 2019 2019 HOH HOH . 
M 7 HOH B 1 2001 2001 HOH HOH . 
M 7 HOH B 2 2002 2002 HOH HOH . 
M 7 HOH B 3 2003 2003 HOH HOH . 
M 7 HOH B 4 2004 2004 HOH HOH . 
M 7 HOH B 5 2005 2005 HOH HOH . 
M 7 HOH B 6 2006 2006 HOH HOH . 
M 7 HOH B 7 2007 2007 HOH HOH . 
M 7 HOH B 8 2008 2008 HOH HOH . 
M 7 HOH B 9 2009 2009 HOH HOH . 
M 7 HOH B 10 2010 2010 HOH HOH . 
M 7 HOH B 11 2011 2011 HOH HOH . 
M 7 HOH B 12 2012 2012 HOH HOH . 
M 7 HOH B 13 2013 2013 HOH HOH . 
M 7 HOH B 14 2014 2014 HOH HOH . 
M 7 HOH B 15 2015 2015 HOH HOH . 
M 7 HOH B 16 2016 2016 HOH HOH . 
M 7 HOH B 17 2017 2017 HOH HOH . 
M 7 HOH B 18 2018 2018 HOH HOH . 
M 7 HOH B 19 2019 2019 HOH HOH . 
M 7 HOH B 20 2020 2020 HOH HOH . 
M 7 HOH B 21 2021 2021 HOH HOH . 
M 7 HOH B 22 2022 2022 HOH HOH . 
M 7 HOH B 23 2023 2023 HOH HOH . 
M 7 HOH B 24 2024 2024 HOH HOH . 
M 7 HOH B 25 2025 2025 HOH HOH . 
M 7 HOH B 26 2026 2026 HOH HOH . 
M 7 HOH B 27 2027 2027 HOH HOH . 
M 7 HOH B 28 2028 2028 HOH HOH . 
M 7 HOH B 29 2029 2029 HOH HOH . 
M 7 HOH B 30 2030 2030 HOH HOH . 
M 7 HOH B 31 2031 2031 HOH HOH . 
M 7 HOH B 32 2032 2032 HOH HOH . 
M 7 HOH B 33 2033 2033 HOH HOH . 
M 7 HOH B 34 2034 2034 HOH HOH . 
M 7 HOH B 35 2035 2035 HOH HOH . 
M 7 HOH B 36 2036 2036 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . C 2 20.27 17.74 11.044 1 85.71 ? C TRS 1319 A 1 
HETATM 2 C C1 TRS . . . C 2 21.225 18.298 12.1 1 85.28 ? C1 TRS 1319 A 1 
HETATM 3 C C2 TRS . . . C 2 21.065 17.736 9.74 1 86.17 ? C2 TRS 1319 A 1 
HETATM 4 C C3 TRS . . . C 2 19.609 16.361 10.962 1 86.92 ? C3 TRS 1319 A 1 
HETATM 5 N N TRS . . . C 2 19.232 18.858 11.025 1 85.66 ? N TRS 1319 A 1 
HETATM 6 O O1 TRS . . . C 2 21.474 17.951 13.455 1 82.84 ? O1 TRS 1319 A 1 
HETATM 7 O O2 TRS . . . C 2 20.118 18.026 8.706 1 85.54 ? O2 TRS 1319 A 1 
HETATM 8 O O3 TRS . . . C 2 20.536 15.411 11.467 1 87.21 ? O3 TRS 1319 A 1 
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_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
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